BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14830.1
Length=1941
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478897 jgi|Araly1|478897|fgenesh2_kg.3__1598__AT3G14830.1 2460 0.0
> Ahg478897 jgi|Araly1|478897|fgenesh2_kg.3__1598__AT3G14830.1
Length=1743
Score = 2460 bits (1332), Expect = 0.0
Identities = 1513/1598 (95%), Gaps = 21/1598 (1%)
Strand=Plus/Plus
Query 189 CGTCAAACCCTAATTTTGACTTCCGGGTG-GATAATCCCAAATCCGTTTCATAGCTCGAT 247
||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 59 CGTCAAACCCTAATTTTGACTTCAAGGTGTG-TAATCCCAAATCCGTTTCATAGCTCGAT 117
Query 248 TTCACTGATAAATTTCCGAGCTTTCGGTGTTTTGATTCGCATGAGGATTTGAATTGACTA 307
|||||| ||||||||||||| | ||||||||||||||||||||||||| | | |
Sbjct 118 TTCACTCATAAATTTCCGAG----C----TTTTGATTCGCATGAGGATTTGAATAGGCAA 169
Query 308 GGAAAGATAAAGATGTCTA-TGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACA 366
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GGAAAGATAAAGATGTC-AGTGGAGAGATCTTTAGAAGCTTGGGAAGAGGTTCAACGACA 228
Query 367 TGGACAAGACTTAGCTGATCGACTTGCTCAAGGATTTACGGGTTTGATTCATATAAACCC 426
||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 229 TGGGCAAGATTTAGCTGATCGACTTGCTCAGGGATTTACTGGTTTGATTCATATAAACCC 288
Query 427 ACCTTCGTTTCCATGGCCGCCGAATCACCATCATCTTCACAAGGCGAAACTGTTCGATCT 486
||||||||||||||||||||| ||||| |||| || ||||||||||||| ||||||||
Sbjct 289 ACCTTCGTTTCCATGGCCGCCTAATCATAATCA--TT-ACAAGGCGAAACTATTCGATCT 345
Query 487 CGAGTTCCCAACTCAACATTTCAGTGTTATTAAGGATTCTAGGTTTAGTATCAACCAACC 546
||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 346 CGAGTTCCCTAGTCAACATTTCAGTGTTATTAGGGATTCTAGGTTTAGTATCAACCAACC 405
Query 547 AATCAACGGTGTCACAGCGATTCTCGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGA 606
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 406 CATCAACGGTGTCTCAGCGATTCTTGATATTGGGAATAAGATAGGTCAAGCTGGTGTTGA 465
Query 607 CTTTGGTGCTGGG-TTGAATGTGATGGTCCAACAGTTCTTCAGGAGGTTGCCTATACCGT 665
|||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 466 TTTTGGTGC-GGGTTTGAATGTGATGGTCCAACAATTCTTTAGGAGGTTGCCTATTCCGT 524
Query 666 TCTTACACGAGGATAATAACAAGCTTGTTGTCTCTGTGGATGGTGATAAGAGTACAAGGA 725
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 525 TCTTGCACGAGGATAATAACAAGCTTGTTGTCTCTGTTGATGGTGATAAGAGTACAAGGA 584
Query 726 GCCATAGAGCTTATGTGATCACAAAAGGGGATTTGGGAATGGCTACAGAACGGTTGAGGG 785
||||||| ||||||| |||||||||||| ||||||||| ||||| |||||||||||||||
Sbjct 585 GCCATAGGGCTTATGCGATCACAAAAGGTGATTTGGGATTGGCTGCAGAACGGTTGAGGG 644
Query 786 ACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTG 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 ACTCAGGGTTTTCTAAGACAGATGATACTGCTTCTGTTACTATGTCTGAGGAGGAAGTTG 704
Query 846 CAGATTCCTATCTTAGAGCTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATACGT 905
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 705 CAGATTCCTATCTAAGAACTGCTGGATTGCTTGGAAGATCAAAGGGAACAATTGATATGT 764
Query 906 CATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGATC 965
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 765 CATCAAGTTATGACAGTAGGACAAATGGTATGGAACATTCATTGGCAGCCAGAGGAGACC 824
Query 966 TCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCT 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TCTGGAGGGTAGAAGCTTCACATTCGAGTTCTACTGCAAGCGATGGAAATTCGTCTCTCT 884
Query 1026 TTCTTCTCCAACTTGGACCACTTCTCTTTCTACGCGATTCAACTCTTCTTTTACCGTTAC 1085
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 885 TTCTTCTCCAGCTTGGACCACTTCTCTTTCTACGCGATTCAACGCTTCTTTTACCGTTAC 944
Query 1086 ACTTATCAAAACAGCACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCAC 1145
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 ACTTATCAAAACAACACTTGCTCTGGTATGGATATGATAGGAAGAAAGGTATGCATTCAC 1004
Query 1146 TCTGTCCAGCTATATGGTCAAAGCATCGGAGGTGGCTTATGATGTCAATGCTCTCTCTCA 1205
|||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1005 TCTGCCCAGCTTTATGGTCAAAGCATCGAAGGTGGCTTATGATGTCAATGCTCTCTCTCA 1064
Query 1206 ATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTAT 1265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ATCCTTTAGCTTGCTCATTTATGGATTTGCAATTTCCAAACGGGCAATTGACATATGTAT 1124
Query 1266 CTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGTGGTCTTCTTCAAGCAC 1325
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1125 CTGGCGAAGGACTGACGACAAGTGCTTTTGTGCCTTTTTGTGGCGGTCTTCTTCAAGCAC 1184
Query 1326 AGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCC 1385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGGTCAATATCCAGGCGACATGAGATTTAGTTACTCTTGTAAGAATAAATGTGGAACCC 1244
Query 1386 GAATCACACCAATGGTACATTGGCCTGATAAATCATTTGGGTTGGATCTTTCTCAACCCT 1445
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1245 TAATCACACCAATGGTACATTGGCCTGACAAATCATTTGCGTTGGATCTTTCTCAACCCT 1304
Query 1446 TGGCTTGGCGTAGA-TCCGGACTACTGATGAAACCGACAATTCAAGTCAGTGTATGTCCC 1504
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1305 TGGCTTGGCGTAGAGTC-GGACTACTGATGAAACCAACAATTCAAGTCAGTGTATGTCCC 1363
Query 1505 ACATTCGGTGGAAGCAATCCCGGGATT-AAGGCAGAAGTTATTCACTCGTTGAGCGATGA 1563
||||| |||||||||||||| ||| || || |||||||||||||||||||||||||||||
Sbjct 1364 ACATTTGGTGGAAGCAATCCGGGG-TTGAAAGCAGAAGTTATTCACTCGTTGAGCGATGA 1422
Query 1564 CTTGAATCTGATATGTGGCTACGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTAGC 1623
||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1423 CTTGAATCTCATATGTGGCTATGCACTCAATGCACATCCTTCAGCATTTGCCTCTGTATC 1482
Query 1624 TTTTGGTCGGTCGAAATGGAATGGAAACATTGGACGCACGGGAATAGTTGTTAGAGCTGA 1683
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1483 TTTTGGACGGTCGAAATGGAATGGGAACATTGGACGCACGGGAATAGTTGTTAGAGCTGA 1542
Query 1684 TACTCCACTTGCAAGTATTGGCCAGCCTTCTTTCTCTATCCAGCTTAATAACGCTTTCGA 1743
|||||| ||||||||||| ||||||||||| |||||| ||||| ||||||||||| ||||
Sbjct 1543 TACTCCTCTTGCAAGTATCGGCCAGCCTTCCTTCTCTGTCCAGTTTAATAACGCTATCGA 1602
Query 1744 GTTCTGAATCTTTCCAATATAACATAGGAGaaaaaaaa 1781
|||||||| ||||||||||||| |||| | ||||||||
Sbjct 1603 GTTCTGAACCTTTCCAATATAAGATAGAAAAAAAAAAA 1640
Score = 60.2 bits (32), Expect = 5e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 25 CAAAGTGGCGGTAACTGGTAAGGTTAATCTCTGTG 59
|||||||||||||||||||||||||||||| ||||
Sbjct 1 CAAAGTGGCGGTAACTGGTAAGGTTAATCTGTGTG 35
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72942819175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5