BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14840.2
Length=3394
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478899 jgi|Araly1|478899|fgenesh2_kg.3__1600__AT3G14840.2 2632 0.0
Ahg474471 jgi|Araly1|474471|fgenesh2_kg.1__4425__AT1G53420.1 592 8e-168
> Ahg478899 jgi|Araly1|478899|fgenesh2_kg.3__1600__AT3G14840.2
Length=3065
Score = 2632 bits (1425), Expect = 0.0
Identities = 1704/1838 (93%), Gaps = 22/1838 (1%)
Strand=Plus/Plus
Query 1402 AAATAACAAGCAATGAGACTAAGTATGATGCTGACACATGGGATACACCGGGTTACTATG 1461
||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1140 AAATAAC-TCCAATGAGACTAAGTATGACGCTGACACATGGGATACACCGGGTTATTATA 1198
Query 1462 ATAGTAAAAACGGGTGGGTTTCTAGCAACACGGGAAACTTCTTGGATGATGATCGGACTA 1521
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATATTAGAAACGGGTGGGTTTCTAGCAACACGGGAAACTTCTTGGATGATGATCGGACTA 1258
Query 1522 ACAATGGA-AAATCAAAATGGTCGAATTCATCAGAGCTTAAGATAACAAATTCTAGCATA 1580
|||||||| ||| | |||| ||||||||| | |||||| ||||||||||||||| ||
Sbjct 1259 ACAATGGAGAAAAC-GTATGGGAGAATTCATCTGCGCTTAACATAACAAATTCTAGCCTA 1317
Query 1581 GATTTTAGGCTT-TACACACAAGCGCGTCTCTCGGCTATCTCCCTCACTTACCAGGCATT 1639
|||| |||| || || ||||| |||||||| ||||| || |||||||||||| | |||||
Sbjct 1318 GATTCTAGG-TTCTATACACACGCGCGTCTGTCGGCCATTTCCCTCACTTACTACGCATT 1376
Query 1640 GTGTCTTGGAAAAGGAAACTATACGGTTAATCTTCATTTCGCTGAAATTATGTTCAATGA 1699
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1377 GTGTCTTGGAGAAGGAAACTATACGGTTAATCTTCATTTCGCTGAAATTATGTTCAGTGA 1436
Query 1700 AAAGAACAT-GTATAGCAATTTGGGAAGACGATACTTCGACATATACGTTCAGGGTAAAC 1758
|| ||| | ||||| || |||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1437 CAACAAC-TCGTATACCAGTTTGGGAAGACGATTCTTTGACATATACGTTCAGGGTAAAC 1495
Query 1759 GTGAAGTGAAAGATTTCAATATCGTTGATGAAGCAAAAGGTGTGGGAAAAGCTGTTGTTA 1818
||| ||||| ||||||||||| |||||||| |||||||||| |||| |||||| ||||
Sbjct 1496 TTGAGGTGAAGGATTTCAATATTGTTGATGAGGCAAAAGGTGCAGGAAGAGCTGTGGTTA 1555
Query 1819 AGAAATTTCCTGTCATGGTTACAAATGGGAAACTGGAAATAAGATTGCAGTGGGCTGGGA 1878
|||||||||| |||| |||| |||||||||||||| || ||||| |||||||||||||
Sbjct 1556 AGAAATTTCCGGTCACAATTACGAATGGGAAACTGGATATTAGATTACAGTGGGCTGGGA 1615
Query 1879 AAGGAACTCAAGCTATTCCTGTGAGAGGTGTCTATGGTCCTCTCATATCTGCTGTATCGG 1938
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1616 AAGGAACTCAAGCTATTCCTGTGAGAGGTGTATATGGTCCTCTCATATCTGCTGTATCAG 1675
Query 1939 TAGATCCAGATTTTATTCCACCAAAGGAACCGGGCACTGGAACTGGTGGTGGAAGTTCTG 1998
|||||||| |||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 1676 TAGATCCAAATTTTATTCCACCAAAGGAA-----C-CTGGAACTGGTGGTGGAAGCTCTG 1729
Query 1999 TTGGTACAGTGGTTGGTAGTGTAATCGCTTCTACGGTGTTTCTTGTGCTTTTAATCGGCG 2058
||||| ||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 1730 TTGGTGCAGTGGTTGGTAGTGTAATTGCTTCAACTTTGTTTCTTGTGCTTTTAATCGGCG 1789
Query 2059 GTATATTATGGTGGAGAGGCTGCTTAAGACCCAAGAGTCAGATGGAAAAAGATTTCAAGA 2118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 GTATATTATGGTGGAGAGGCTGCTTAAGACCCAAGAGTCAGATGGAAAAAGATTTCAAGA 1849
Query 2119 ACTTAGATTTCCAGATCAGTTCGTTCTCCTTGAGGCAAATCAAAGTTGCCACGGATAACT 2178
|||||||||||||||||||||| ||||| ||||||||||||||||| ||||| |||||||
Sbjct 1850 ACTTAGATTTCCAGATCAGTTCATTCTCGTTGAGGCAAATCAAAGTAGCCACAGATAACT 1909
Query 2179 TTGATCCTGCAAACAAGATCGGAGAAGGTGGTTTTGGTCCTGTACACAAGGGAAT--A-- 2234
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1910 TTGATCCTGCAAACAAGATCGGAGAAGGTGGTTTCGGTCCTGTACACAAGGGAATACAGG 1969
Query 2235 -A----TGACTGATGGAACTGTAATCGCGGTGAAGCAGCTATCGGCAAAATCAAAACAAG 2289
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1970 GAGTGTTGACTGATGGAACCGTAATCGCGGTGAAGCAGCTATCGGCGAAATCAAAACAAG 2029
Query 2290 GGAATCGAGAATTCTTAAACGAGATTGCTATGATTTCGGCTCTGCAGCATCCACATTTGG 2349
||||| | || ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2030 GGAATAGGGAGTTCTTGAACGAGATTGCTATGATTTCGGCTCTGCAGCATCCACATTTGG 2089
Query 2350 TTAAACTATATGGATGTTGCGTTGAAGGTGATCAGCTCCTGCTAGTTTACGAGTACTTGG 2409
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 2090 TTAAACTATATGGATGTTGTGTCGAAGGTGATCAGCTCCTGCTAGTTTACGAGTACTTGG 2149
Query 2410 AGAACAACAGTCTCGCGCGAGCTCTTTTCGGACCTCAAGAGACTCAGATACCACTAAATT 2469
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2150 AAAACAACAGTCTCGCACGAGCTCTTTTCGGTCCTCAAGAGACTCAGATACCACTAAATT 2209
Query 2470 GGCCAATGAGGCAGAAGATTTGTGTTGGAATAGCGAGAGGATTAGCTTATCTCCACGAGG 2529
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 2210 GGCCAATGAGGCAGAAGATTTGTGTCGGAATAGCGAGAGGATTAGCTTATCTTCACGAGG 2269
Query 2530 AATCAAGACTCAAGATCGTACACAGAGACATCAAAGCCACTAATGTCTTGCTGGATAAGG 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2270 AATCAAGACTCAAGATCGTACACAGAGACATCAAAGCCACTAATGTCTTGCTGGATAAGG 2329
Query 2590 AACTAAACCCAAAGATTTCAGATTTTGGGCTTGCTAAGCTTGATGAAGAAGAAAACACAC 2649
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 2330 AACTAAACCCAAAGATTTCTGATTTTGGTCTTGCTAAGCTTGATGAAGAAGAAAACACAC 2389
Query 2650 ACATCAGCACACGAGTCGCTGGAACATATGGATACATGGCTCCAGAATACGCCATGAGAG 2709
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 2390 ACATCAGCACACGAGTTGCCGGAACATATGGATACATGGCTCCAGAGTACGCCATGAGAG 2449
Query 2710 GCCATTTGACAGATAAAGCCGACGTCTACAGTTTTGGCGTTGTGGCCCTAGAAATCGTTC 2769
|||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 2450 GCCATTTGACAGATAAAGCCGACGTCTACAGTTTCGGTGTTGTGGCTTTAGAAATCGTTC 2509
Query 2770 ACGGAAAGAGCAACACGAGCTCACGATCTAAAGCTGATACCTTCTACCTTCTTGACTGGG 2829
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2510 ACGGGAAGAGCAACACGAGCTCACGATCCAAAGCAGATACCTTCTACCTTCTTGACTGGG 2569
Query 2830 TGCACGTTTTAAGGGAACAAAACACTCTACTTGAAGTAGTAGATCCAAGGCTAGGAACAG 2889
|||||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 2570 TGCACGTTCTAAGGGAGCAAAACAATCTGTTTGAAGTAGTAGATCCAAGGCTAGGAACAG 2629
Query 2890 ATTACAACAAACAAGAAGCATTGATGATGATTCAGATAGGGATGCTCTGTACCAGTCCAG 2949
|||||||||||||||||||| ||| ||||||| |||||||||||||||| || |||||||
Sbjct 2630 ATTACAACAAACAAGAAGCAATGACGATGATTAAGATAGGGATGCTCTGCACTAGTCCAG 2689
Query 2950 CTCCAGGGGATAGACCTTCGATGTCGACGGTGGTGAGTATGCTCGAAGGCCATTCAACGG 3009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2690 CTCCAGGGGATAGACCTTCGATGTCGACGGTGGTGAGTATGCTCGAAGGCCATTCAACGG 2749
Query 3010 TGAATGTTGAGAAACTTCTTGAAGCTTCGGTCAACAATGAAAAGGACGAAGAGAGTGTGA 3069
||||||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 2750 TGAATGTTGAGAAGCTTCTTGAAGCTTCTTTAAACAATGAAAAGGACGAAGAGAGCGTGA 2809
Query 3070 GAGCGATGAAAAGGCATTACGCCACGATAGGTGAGGAGGAGATAACGAACACGACAACTA 3129
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 2810 GAGCTATGAAAAGACATTACGCCACGATAGGTGAGGAGGAGATAACGAACACGACGACCA 2869
Query 3130 CCGATGGACCTTTCACGTCGTCTTCTACGTCAACCGCCAACGCCAACGATCTTTACCCTG 3189
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2870 CCGATGGACCTCTCACGTCGTCTTCTACGTCAACCGCCAACGCCGGCGATCTTTACCCTG 2929
Query 3190 TTAAGCTCGACTCTGCCTATTGGAACACTAGAACTTAA 3227
|||||||||||||||| ||||||||||| |||||||||
Sbjct 2930 TTAAGCTCGACTCTGCTTATTGGAACACCAGAACTTAA 2967
Score = 1391 bits (753), Expect = 0.0
Identities = 1039/1173 (89%), Gaps = 36/1173 (3%)
Strand=Plus/Plus
Query 165 ATGTCGTTAAATCGACAACTTCTATTCACTTACTACTTCATCGTCTCTCTTATCCTCTTC 224
|||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGTCGTTAAATCGACAACTCCTCTTCACTTACTTCTTCATCGTCTCTCTTATCCTCTTC 60
Query 225 TCCGATTTCGTATCCTCTGC-AACATTACCAAAAGAAGAAGTGGATGCTTTACAAAGCGT 283
|||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCGGTTTCGTATCCTCT-CAAACATTACCAAAAGAAGAAGTGGATGCTTTACAAAGCGT 119
Query 284 CGCGACGGCGTTGAAGAAGAGTAATTGGAATTTCAGTGTGGATCCATGTGACGAAACCTT 343
||||||||||||||||||||| ||||||||| |||||||||||||| ||| || ||
Sbjct 120 AGCGACGGCGTTGAAGAAGAGTGGTTGGAATTTTAGTGTGGATCCATGCGACCTCAC-TT 178
Query 344 GTCTGAAGGCGGATGGAGGAATCCTAACGCCGCTAAGGGATTCGAAGACGCCGTTACTTG 403
|||| |||||||||||||||| |||||||||||||||||| |||||||||||| ||||
Sbjct 179 --CTGACGGCGGATGGAGGAATCTTAACGCCGCTAAGGGATTTGAAGACGCCGTTTCTTG 236
Query 404 TAACTGCTCCTCCGTCATCTGCCACGTCACCAACATAGTTCTCAAGGCACAAGACCTTCA 463
|| ||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct 237 TACCTGCTCCTCCGTCATTTGCCACGTCAACAACAGAGTTCTCAAGGCACAAGACCTTCA 296
Query 464 AGGATCTCTTCCTACAGATCTTTCAGGACTTCCTTTCTTGCAAGAGCTTGATCTGACTAG 523
|||| ||||||||| |||||||||||| |||||||||||||||||| |||||||| ||||
Sbjct 297 AGGAACTCTTCCTAAAGATCTTTCAGGCCTTCCTTTCTTGCAAGAGATTGATCTGTCTAG 356
Query 524 AAACTATCTCAACGGTTCCATTCCTCCCGAATGGGGAGCCTCATCACTTCTAAACATCTC 583
||||| ||||||||||||||||||||||||||||| | ||| ||||| | ||||||||
Sbjct 357 AAACTTTCTCAACGGTTCCATTCCTCCCGAATGGGCATCCTTGCCACTTGTCAACATCTC 416
Query 584 ACTACTTGGAAACCGGATAAGTGGTTCAATCCCAAAAGAACTTGGAAACCTTAC-AACCC 642
||| |||||||| ||||||| |||| |||||||||||||| ||||||||||||| ||||
Sbjct 417 ACTTCTTGGAAATCGGATAACTGGTCCAATCCCAAAAGAATTTGGAAACCTTACTAACC- 475
Query 643 TTTCTG--GTCTTGTCTTGGAATACAACCAACTCTCAGGGAAGATACCTCCAGAGCTCGG 700
|| | | || |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 476 TT-C-GAAGTTTTGTCTTGGAATACAACCAAATCTCAGGGAAGTTACCTCCAGAGCTCGG 533
Query 701 GAATCTACCAAACCTTAAAAGACTGTTACTTAGCTCGAATAACTTGAGCGGGGAAATCCC 760
|||| |||| ||| || ||||||| || | ||| || ||||| |||||||| ||
Sbjct 534 GAATTTACCCAACATTCAAAGACT----CT---C--GAACAATTTGAGTGGGGAAATACC 584
Query 761 AAGTACATTCGCCAAACTTACTACGTTGACTGATTTACGTATTAGTGACAACCAGTTCAC 820
||||||||| |||||||| ||| |||||||||| ||||| |||||||| ||||||||
Sbjct 585 AAGTACATTTTCCAAACTTGTTACACTGACTGATTTCCGTATCAGTGACAATCAGTTCAC 644
Query 821 TGGTGCTATACCAGATTTCATCCAGAACTGGAAAGGACTAGAGAAACTGGTTATTCAAGC 880
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 645 TGGTACTATACCAGATTTCATCCAGAACTGGACAGGACTTGAGAAACTGGTTATTCAAGC 704
Query 881 AAGTGGTTTAGTTGGACCGATTCCTAGTGCCATTGGTCTTCTGGGAACCTTGACAGACTT 940
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 705 AAGTGGTTTAGTTGGACCGATTCCTAGTGCCATTGGTCTTCTGGGAAACTTAACAGACTT 764
Query 941 GAGAATCACTGACTTGAGTGGACCTGAATCTCCATTTCCGCCACTAAGAAACATGACATC 1000
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 765 GAGAATCACTGACTTTAGTGGACCTGAATCTCCATTTCCGCCACTAATAAACATGACATC 824
Query 1001 GATGAAGTATTTGATTCTTAGGAACTGTAACCTTACAGG-AGACTTACCTGCGTATCTTG 1059
| ||||| ||||||||||||||||||| ||||||||||| | | |||||| |||||||||
Sbjct 825 GTTGAAGAATTTGATTCTTAGGAACTGCAACCTTACAGGCA-ATTTACCTTCGTATCTTG 883
Query 1060 GACAGAATAGAAAATTAAAGAATCT---AGATCTTAGCTTTAACAAACTGAGTGGACCAA 1116
||| | | ||| ||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 884 GAC-GCA--GAACCTTAAAGAATTTGTTAGATCTTAGCTTTAACAAACTGAGTGGACCAA 940
Query 1117 TCCCAGCCACATATTCCGGTCTTTCAGATGTAGATTTCATATACTTTACAAGTAACATGT 1176
|||| | | ||| | | ||||||||||||||||| |||||| ||||||||||||||||
Sbjct 941 TCCCCGAGAGTTATACAGCTCTTTCAGATGTAGATTACATATATTTTACAAGTAACATGT 1000
Query 1177 TAAATGGACAAGTACCA-AGTTGGATGGTAGACCAAGGAGACACGATTGATATTACTTAC 1235
|||| || |||||||| | | |||||| |||| ||||||||||||||||| || |||||
Sbjct 1001 TAAACGGGGAAGTACCACACT-GGATGGCAGACAAAGGAGACACGATTGATCTTGCTTAC 1059
Query 1236 AATAACTTCTCCAAAGAT---AAAACCGAAGAATGTCAACAAAAATCCGTGAACACGTTT 1292
|||||||||||||||||| |||| ||| ||||| |||| ||| | | ||| ||||||
Sbjct 1060 AATAACTTCTCCAAAGATGTTAAAATCGATGAATGCCAACGAAA--CAG-GAATACGTTT 1116
Query 1293 TCAAGCACAAGCCCTTTAGTGGCAAATAACTCC 1325
|||||||||||||||||||||||||||||||||
Sbjct 1117 TCAAGCACAAGCCCTTTAGTGGCAAATAACTCC 1149
Score = 73.1 bits (39), Expect = 1e-11
Identities = 68/80 (85%), Gaps = 9/80 (11%)
Strand=Plus/Plus
Query 3311 ttttttatttATGATTATTCTATTTAAGACAATTGGAAGATTACGTTACATGAAACAGAA 3370
|||| || ||||||||||| |||||||||| | |||||||||| ||||||||||
Sbjct 2995 TTTTGTA-TTATGATTATTTTATTTAAGAC-------A-ATTACGTTACCTGAAACAGAA 3045
Query 3371 AATGAGAATATTTATCTTAA 3390
||||||||||||||||||||
Sbjct 3046 AATGAGAATATTTATCTTAA 3065
> Ahg474471 jgi|Araly1|474471|fgenesh2_kg.1__4425__AT1G53420.1
Length=2862
Score = 592 bits (320), Expect = 8e-168
Identities = 731/928 (79%), Gaps = 34/928 (4%)
Strand=Plus/Plus
Query 2075 AGGCTGCTT-AAGACCCAAGAGTCAGATGGAAAAAGATTTCAAGAA-CTTAGATTTCCA- 2131
||| ||||| || | | || || || ||||||| ||||||||| || || || | ||
Sbjct 1767 AGGTTGCTTGAA-ATCGAAAAGCCAAATGGAAAGAGATTTCAA-AAGTTTGGAACT-CAT 1823
Query 2132 GATCAG-TTCGTTCTCCTTGAGGCAAATCAAAGTTGCCACGGATAACTTTGATCCTGCAA 2190
||| | ||| ||||| ||||||||||||||| | || || | ||||||||| ||||||
Sbjct 1824 GAT-TGCTTCTTTCTCGTTGAGGCAAATCAAAATCGCTACAAACAACTTTGATTCTGCAA 1882
Query 2191 ACAAG-ATCGGAGAAGGTGGTTTTGGTCCTGTACACAAGGGAATA-ATGACTGATGGAAC 2248
| || || |||||||| || |||||||||||| ||||||||| | || ||||||||||
Sbjct 1883 A-TAGAATTGGAGAAGGCGGCTTTGGTCCTGTATACAAGGGAA-AGTTGTCTGATGGAAC 1940
Query 2249 TGTAATCGCGGTGAAGCAGCTATCGGCAAAATCAAAACAAGGGAATCGAGAATTCTTAAA 2308
||||||||||||| || || ||| || ||||||||||||||| || || ||||| ||
Sbjct 1941 AATAATCGCGGTGAAACAACTTTCGACAGGATCAAAACAAGGGAACCGCGAGTTCTTGAA 2000
Query 2309 CGAGATT-GCTATGATTTCGGCTCTGCAGCATCC-ACATTTGGTTAAACTATATGGATGT 2366
||||||| || |||||||| |||||||| || || | || ||||||||||||||||||||
Sbjct 2001 CGAGATTGGC-ATGATTTCAGCTCTGCACCACCCGA-ATCTGGTTAAACTATATGGATGT 2058
Query 2367 TGCGTTGAAGGTGATCAGCTCCTGCTAGTTTACGAGTACTTG--GAGAACAACAGTCTCG 2424
||||||||||| || ||||| ||||||| || |||| ||| || |||||||| || |
Sbjct 2059 TGCGTTGAAGGAGACCAGCTTTTGCTAGTCTATGAGT--TTGTAGAAAACAACAGCCTTG 2116
Query 2425 CGCGAGCTCTT-TTCGGACCTCAAGAGACTCAGAT-ACCACTAAATTGGCCAATGAGGCA 2482
| |||| || || || || ||||| |||||| | | | | | ||||| | || |
Sbjct 2117 CTAGAGC-ATTGTTTGGTCCCCAAGAAACTCAGTTGA-GATTGGACTGGCCTACAAGACG 2174
Query 2483 GAAGATTTGTGTTGGAATAGCGAGAGGATTAGCTTATCTCCACGAGGAATCAAGACTCAA 2542
|||||| ||| | || ||||||||||| |||| ||||| ||||| ||||| || || ||
Sbjct 2175 GAAGATATGTATCGGGGTAGCGAGAGGACTAGCATATCTACACGAAGAATCGAGGCTAAA 2234
Query 2543 GATCGTACACAGAGACATCAAAGCCACTAATGTCTTGCTGGATAAGGAACTAAACCCAAA 2602
||| ||||| |||||||||||| |||||||||| ||| | || || ||||| || |||||
Sbjct 2235 GATTGTACATAGAGACATCAAATCCACTAATGTGTTGTTAGACAAAGAACTGAATCCAAA 2294
Query 2603 GATTTCAGATTTTGGGCTTGCTAAGCTTGATGAAGAAGAAAACACACACATCAGCACACG 2662
|| ||||| ||||| |||||||||||||||||||| || | ||| ||||| ||||| ||
Sbjct 2295 AATATCAGACTTTGGTCTTGCTAAGCTTGATGAAGAGGACAGCACTCACATTAGCACTCG 2354
Query 2663 AGTCGCTGGAACATATGGATACATGGCTCCAGAATACGCCATGAGAGGCCATTTGACAGA 2722
| |||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2355 AATCGCTGGAACATTTGGTTACATGGCTCCAGAGTACGCCATGAGAGGCCATTTGACAGA 2414
Query 2723 TAAAGCCGACGTCTACAGTTTTGGCGTTGTGGCCCTAGAAATCGTTCACGGAAAGA-GCA 2781
||||||||| || ||||| |||||| |||| || ||||| |||||||| |||| || |||
Sbjct 2415 TAAAGCCGATGTTTACAGCTTTGGCATTGTAGCTCTAGAGATCGTTCATGGAA-GAAGCA 2473
Query 2782 ACACGAGCTCACGAT-CTAAAGCTGATACCTTCTACCTTCTTGACTGGGTGCACGTTTTA 2840
| | | ||| | | ||| | |||||||||| ||| ||||||||||| | |||||
Sbjct 2474 ATAAAATAGAACGTTGCAAAAACA-ATACCTTCTATCTTATTGACTGGGTGGAGGTTTTG 2532
Query 2841 AGGGAACAAAACACTCTACTTG-AAGTAGTAGATCCAAGGCTAGGAACAGATTACAACAA 2899
||||| || || | ||| |||| || | || |||||||| ||||| ||||||||||||
Sbjct 2533 AGGGAGCAGAATAATCT-CTTGGAACTGGTGGATCCAAGATTAGGATCAGATTACAACAG 2591
Query 2900 ACAAGAAGCATTGATGATGATTCAGATAGGGATGCTCTGTACCAG-TCCAGCTCCAGGGG 2958
| |||||||| ||| ||||| || || | ||| | ||||| || || || || | |
Sbjct 2592 AGAAGAAGCAATGACAATGATCCAAATTGCGATAATGTGTACAAGCTC-AGAGCCTTGTG 2650
Query 2959 ATAGACCTTCGATGTC-GACGGTGGTGA 2985
|||||| || ||||| || | ||||||
Sbjct 2651 TTAGACCGTCAATGTCAGAAG-TGGTGA 2677
Score = 460 bits (249), Expect = 2e-128
Identities = 634/814 (78%), Gaps = 49/814 (6%)
Strand=Plus/Plus
Query 459 CTTCAAGGATCTCTTCCTACAGATCTTT-CAGGACTTCC-TTTCTTGCAAGAGCTTGATC 516
|||||||| |||||||| | ||| ||| |||||||| |||| ||||| || ||||||
Sbjct 223 CTTCAAGGGTCTCTTCCCAAAGA-GTTTGTGGGACTTCCTTTTC-TGCAAAAGATTGATC 280
Query 517 TGACTAGAAACTATCTCAACGGTTCCATTCCTCCCGAATGGGGAGCCTCATCACTTCTAA 576
| | |||||||||||||| |||||||| ||||| |||||||||| || ||||| | |
Sbjct 281 TCTCAAGAAACTATCTCAATGGTTCCATCCCTCCTGAATGGGGAGTCTTGCCACTTGTCA 340
Query 577 ACATCTCACTACTTGGAAACCGGA-TAA-GTGGTTCAATCCCAAAAGAACTTGGAAACCT 634
|||| || || | |||||||| || ||| | ||| ||||||| || ||| |||||||| |
Sbjct 341 ACATATCGCTTCGTGGAAACC-GATTAACG-GGTCCAATCCCTAAGGAATTTGGAAACAT 398
Query 635 TACAACCCTTTCTGGTCTTGTCTTGGAATACAACCAACTCTCAGGGAAG-A-TACCTCCA 692
|||||| ||| || | |||||| ||||| ||| ||||| ||| |||| | ||||||
Sbjct 399 TACAACTCTTACTAGCCTTGTCCTGGAAGCCAATCAACTTTCA--GAAGAATTACCTCTT 456
Query 693 GAGCTCGGGAATCTACCAAACCTTAAAAGACTG-TTACTTAGCTCGAATAACTTGAGCGG 751
||||||||||||||||||||| |||||| | || || ||||||||||||||||| | | |
Sbjct 457 GAGCTCGGGAATCTACCAAACATTAAAAAAATGATT-CTTAGCTCGAATAACTTCAAC-G 514
Query 752 GGAA-ATCCCAAGTACATTCGCCAAACTTACTACGTTGACTGA-TTT-ACGTATTAGTGA 808
| || || ||| |||||| | ||||| || || |||| || ||| | ||| | ||||
Sbjct 515 GAAACATTCCATCTACATTTACAAAACTAACCACCTTGAGAGATTTTCATGTA-T-GTGA 572
Query 809 CAACCAGTTCACTGGTGCTATACCAGATTTCATCCAGAACTGGA--AAGGACTAGAGAAA 866
||||||||| | || | || |||||||||||||| || |||| || ||| ||||||
Sbjct 573 CAACCAGTTTTCAGGAACAATTCCAGATTTCATCCAAAAATGGACTAA--ACTTGAGAAA 630
Query 867 CTGGTTATTCAAGCAAGTGGTTTAGTTGGACCGATTCCTAGTGCCATTGGT-CTTCTGGG 925
||||||||||||||||||||||||||||||||||||||||||||||||| | || || |
Sbjct 631 CTGGTTATTCAAGCAAGTGGTTTAGTTGGACCGATTCCTAGTGCCATTGCTTCT-CTCGT 689
Query 926 A-ACCTTGACAGACTTGAGAATCA-CTGACTTGAGT---GGACCTGAATCTCCATTTCCG 980
| | || | |||||||||||||| | || |||| | ||||| |||||||| |||||
Sbjct 690 AGAG-TTAAAAGACTTGAGAATCAGC-GATTTGAATAATGGACCCGAATCTCCCTTTCCA 747
Query 981 CCACTAAGAAACATGACATCGATGAAGT-ATTTGATTCTTAGGAACTGTAACCTTACAGG 1039
|| |||| ||||| | | |||| || ||| ||||| |||||||| |||||||||||
Sbjct 748 CCGTTAAGGAACATAAAAAAGATGGAGACATTA-ATTCTGAGGAACTGCAACCTTACAGG 806
Query 1040 AGACTTACCTGCGTATCTTGGACAGAAT-AGAAAATTAAAGAATCT-AGATCTTAGCTTT 1097
|||||||||||||||||||||| | || | |||||| ||| ||||||||||||
Sbjct 807 AGACTTACCTGCGTATCTTGGA-ACTATTACCTCCTTAAAGC-TCTTAGATCTTAGCTTC 864
Query 1098 AACAAACTGAGTGGA-CCAATCCC-AGCCACATAT-TCCGGTCTTT-CAGATGTAGATTT 1153
|| ||| | |||||| ||| |||| | | || ||| | |||| | || | || ||
Sbjct 865 AATAAATTAAGTGGAGCCA-TCCCTAAC-ACTTATGTTAA-TCTTAGC-GACGGAGGTTA 920
Query 1154 CATATACTTTACAAGTAACATGTTAAATGGA-CAAGTACCAAGTTGGATGGTAGACCAAG 1212
|||||| |||||| | |||||||||||||| | || |||| |||||||||| | |||
Sbjct 921 CATATATTTTACAGGAAACATGTTAAATGGGTCG-GTTCCAAATTGGATGGTAAATAAAG 979
Query 1213 GAGACACGATTGATATTACTTACAATAACTTCTC 1246
|| | | |||||| ||| |||||| || |||||
Sbjct 980 GATATAAAATTGATCTTAGTTACAACAATTTCTC 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128139848291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5