BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14850.2
Length=1171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478900 jgi|Araly1|478900|fgenesh2_kg.3__1601__AT3G14850.2 1531 0.0
> Ahg478900 jgi|Araly1|478900|fgenesh2_kg.3__1601__AT3G14850.2
Length=1103
Score = 1531 bits (829), Expect = 0.0
Identities = 1012/1097 (92%), Gaps = 26/1097 (2%)
Strand=Plus/Plus
Query 3 TCTTGTCTGTGTTGAAATGGGTTCAAAG-GATAACGCCATTTCTAATGACTCTGCATTAG 61
|||| |||||||| |||||||||| ||| ||||||||||||||| ||| |||||||||||
Sbjct 1 TCTTCTCTGTGTTAAAATGGGTTC-AAGAGATAACGCCATTTCTTATGGCTCTGCATTAG 59
Query 62 TTTTATCGcttcttcttcttcttcttcttcCCCTGCTTCACGAAGCAGCAGAAGGATGTG 121
|||||||| |||| || ||||||| | ||| | |||||||||| || |||||||
Sbjct 60 TTTTATCG---CTTC-TC--CTTCTTC-T--CCT-C--CACGAAGCAG-AG--GGATGTG 104
Query 122 ACATGTTCACGGGGCGGTGGGTGAAGGACGATTCTTACCCTCTCTACAATTCCTCCACGT 181
| |||||||||||||||||||||||||||||||||||||| |||||| || |||||||||
Sbjct 105 ATATGTTCACGGGGCGGTGGGTGAAGGACGATTCTTACCCACTCTACGATCCCTCCACGT 164
Query 182 GTCCGTTCATAAGACATGAGTTCTCTTGCCAGAGAAATGGACGGCCAGATCTCGATTACT 241
|||| |||||||||| ||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 165 GTCCATTCATAAGACGTGAGTTCGGTTGCAAGAAAAATGGACGGCCAGATCTCGATTACT 224
Query 242 CTACCTTCAGATGGCAGCCTCTTTCCTGCAAATTAGCAAGGTTCAATGGATTGCAGTTTT 301
|||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||
Sbjct 225 CTACCTTCAGATGGCAGCCTCTGTCCTGCAAATTAGCAAGGTTCAATGGAGTGGAGTTTT 284
Query 302 TGAAGAAAAACAAAGGGAAGAAGATTATGTTTGTTGGTGATTCTCTTAGTCTAAATCAAT 361
|| |||||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 285 TGGAGAAAAACAAAGGGAAGAAGATAATGTTTGTTGGTGATTCTCTCAGCCTAAATCAAT 344
Query 362 GGCAATCGTTGGCATGTATGCTTCATTCCTCTGTTCCAAATTCTACGTATACTTTAACCA 421
||||||| ||| ||||||||||||| || |||||||| |||||| |||||||||||||||
Sbjct 345 GGCAATCTTTGACATGTATGCTTCACTCTTCTGTTCCCAATTCTTCGTATACTTTAACCA 404
Query 422 CACAAGGTAGTATATCAACCTACACATTCAAGGAGTATGGACTGGAATTGAAGCTTGATA 481
||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 405 CACAAGGTAGTATCTCAACCTTCACATTCCAGGAGTATGGACTGGAATTGAAGCTTGATA 464
Query 482 GGAATGTTTATC-TAGTAGATATAGTTAGGGAGAAGATTGGGAGAGTTTTGAAGCTTGAT 540
||||||| || | ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 465 GGAATGTATA-CTTAGTAGATATAGTGAGGGAGAAGATTGGGAGAGTTTTGAAGCTTGAT 523
Query 541 TCGATCAATGATGGAAAAAATTGGGT-AGAGATGGATACATTGATTTTTAATACTTGGCA 599
|||||||||||||||||||||| ||| ||| |||||||| |||||||| |||||||||||
Sbjct 524 TCGATCAATGATGGAAAAAATT-GGTCAGAAATGGATACTTTGATTTTCAATACTTGGCA 582
Query 600 TTGGTGGAGTCGGAGAGGTCCTGCACAACCATGGGATT-TGATTCAAATAGGGACTAACG 658
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 583 TTGGTGGAGCCGGAGAGGTCCTGCACAACCATGGGATTAT-ATTCAAATAGGGACTAACG 641
Query 659 TTACAAAAGACATGGACCGTGTGGCCGCGTTTGAAATTGCGCTTGGGACTTGGGGGAAAT 718
|||||||||||||||||||||| || || ||||| || || |||||||||||||| ||||
Sbjct 642 TTACAAAAGACATGGACCGTGTTGCTGCATTTGAGATCGCACTTGGGACTTGGGGAAAAT 701
Query 719 GGGTCGATACCGTCTTAAATACTAAGAAAACTAGAGTCTTTTTTCAAGGAATTTCTCCAT 778
|||| ||||||||| || ||||||||||||||||||||||||||||||||||||| || |
Sbjct 702 GGGTTGATACCGTCGTAGATACTAAGAAAACTAGAGTCTTTTTTCAAGGAATTTCACCGT 761
Query 779 CTCATTACAAAGGAGTTCTGTGGGGCGAACCAGCGGCAAAGAGTTGCGTGGGACAGAAGG 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 CTCATTACAAAGGAGTTCTGTGGGGCGAACCAGCGGCAAAGAGTTGCGTGGGACAGAAGG 821
Query 839 AACCACTTTTGGGGACAAAATATCCAGGAGGATTGCCAGCAGAAGTGGGAGTTTTGAAGA 898
|||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 822 AACCACTTTTGGGGCCAAATTATCCAGGAGGATTACCAGCAGAAGTGGGAGTTTTGAAGA 881
Query 899 GAGCACTCGGGAAAATATCGAAACCGGTGACATTGCTAGACATTACGATGCTTTCGTTGC 958
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 882 GAGCACTCGGGAATATATCCAAACCGGTGACATTGCTAGACATTACGATGCTTTCGTTGC 941
Query 959 TTCGCAAAGATGCTCATCCTTCGGTTTACGGTCTAGGCGGGCGAAACTCCTCCGGTGACT 1018
||||||||||||||||||||||||||||||||||||| || | ||| |||| | |||||
Sbjct 942 TTCGCAAAGATGCTCATCCTTCGGTTTACGGTCTAGGTGGCCAAAAGTCCT--G-TGACT 998
Query 1019 GCAGCCACTGGTGTCTCTCTGGGGTACCGGATACTTGGAATGAGATTCTTTACAATTATA 1078
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 999 GCAGCCACTGGTGTCTCTCTGGCGTACCGGATACTTGGAATGAGATTCTTTACAATTATA 1058
Query 1079 TGGTTGAGTAAAAGAAA 1095
|| ||||||||||||||
Sbjct 1059 TGATTGAGTAAAAGAAA 1075
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 1113 AATTATAGCATTTGTTATTGTGATTGAT 1140
||||||||||||||||||||||||||||
Sbjct 1076 AATTATAGCATTTGTTATTGTGATTGAT 1103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43688862882
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5