BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14860.2
Length=1868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478902 jgi|Araly1|478902|fgenesh2_kg.3__1603__AT3G14860.2 2663 0.0
> Ahg478902 jgi|Araly1|478902|fgenesh2_kg.3__1603__AT3G14860.2
Length=1816
Score = 2663 bits (1442), Expect = 0.0
Identities = 1710/1836 (93%), Gaps = 32/1836 (2%)
Strand=Plus/Plus
Query 11 agaaaagaaaaaaaTCTGTTGTCATCTGCAAATTGGTTTCATTCTATCAGTTGGTGTTGT 70
|||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 7 AGAAAA-AAAAAAA-CTGTTGTCATCTGCAAATTGGTTTCATTCTATCAG-T--TGTTGT 61
Query 71 GGTGTGTTGGAAGATGTGAATCGCCT-CTACTAGGGTTCGATTCCAACATAAAATTGTAC 129
||| |||||| |||| ||||| || || |||||||||||||||||| | ||||||||
Sbjct 62 --TGTCTTGGAATATGTAAATCGTCTCCT-CTAGGGTTCGATTCCAAC-TTCAATTGTAC 117
Query 130 TTTTGGAAGATACAGAGAAAGAGATGGGCAAATCTCAGATTCTTCTAAACGCTGAGAGct 189
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 118 -TTTGGAAGCTACAGAGAAAGAGATGGGCAAATCTCAGATTCTTCTACTCGCTGAGAGCT 176
Query 190 ttacttgttcttctttcaatactttcttcactttatggatcttctttactcttcactcct 249
|||||||||| || | || ||||| ||||||||||||| || |||||| |||
Sbjct 177 TTACTTGTTC-TC--TAAAGACTTTGTTCACTTTATGGA---TC----GTCTTCA--CCT 224
Query 250 ttcCATTTCAAGCTCAAGCTGCTCCTTCTGGTTCCTTGATTAAGCACATGTCATCGGTTC 309
|||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||
Sbjct 225 TTCCATTTCAAGCTCAAGCTGCTCCTTCTGGTTCTTTGATTAAGCACATGTCCTGGGTTC 284
Query 310 TCAAGTGGACTACTGGATCATCCTCTAAATTATCCCAATCAGACACTAATGTTCTTCAGT 369
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 285 TCAAGTGGACTACTGGATCATCCTCTAAAATATCCCAATCAGACACTAATGTTCTTCAGT 344
Query 370 TTGAGAATGGTTACTTGGTCGAAACTGTTGTGGAAGGAAACGATATTGGTGTTGTTCCTT 429
||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 345 TTGAGAATGGTTACTTGGTCGAAACTGTTGTCGAAGGAAACGAAATCGGTGTTGTTCCTT 404
Query 430 ACAAGATTCGAGTTTCTGATGATGGAGAACTTTATGCTGTTGATGAACTTAATAGCAACA 489
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 405 ACAAGATTCGAGTTTCTCATGATGGTGAACTTTATGCTGTTGATGAACTTAATAGCAACA 464
Query 490 TCATGAAAATCACTCCTCCCTTGTCTCAGTACAGCAGGGGAAGATTGGTGGCTGGATCTT 549
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 465 TCATGAAAATCACTCCTCCCTTGTCACAGTACAGCAGGGGAAGGTTGGTGGCTGGATCGT 524
Query 550 TTCAAGGAAAAACAGGG-CATGCAGATGGAAAACCGAGTGAGGCTCGTTTTAACCATCCG 608
|||||||||| || ||| ||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 525 TTCAAGGAAAGAC-GGGACATGCAGATGGAAAACCAAGTGAGGCTCGTTTTAATCATCCG 583
Query 609 AGAGGCGTTACAATGGATGACAAAGGGAACGTTTATGTCGCTGATACTTTGAATCTCGCC 668
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 584 AGAGGTGTAACAATGGATGACAAAGGGAACGTTTATGTCGCTGATACTTTGAATCTCGCC 643
Query 669 ATCCGAAAGATTGGTGATTCAGGTGTTACTACGATAGCTGG-GGGAAAATCAAATATAGC 727
|||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 644 ATCCGAAAGATTGGAGATTCAGGTGTTACTACGATAGCTGGAGGG-AAATCTAATATAGC 702
Query 728 TGGGTATAGAGATGGGCCAAGTGAGGATGCAAAGTTCTCAAATGATTTTGATGTCGTATA 787
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 703 TGGGTATAGAGATGGACCAAGTGAGGATGCAAAGTTCTCAAATGATTTTGATGTTGTATA 762
Query 788 TGTTCGGCCTACCTGCTCGTTGCTGGTCATCGATAGAGGAAATGCGGCTCTTCGCCAAAT 847
||||||| |||| |||||| |||||||||| || ||||||||||||||||||||||||||
Sbjct 763 TGTTCGGTCTACTTGCTCGCTGCTGGTCATTGACAGAGGAAATGCGGCTCTTCGCCAAAT 822
Query 848 CTCTCTCAGTGAAGAGGACTGTGACTATCAAGATGATAGCTCAATCTCTCTAACTGATAT 907
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CTCTCTCAGCGAAGAGGACTGTGACTATCAAGATGATAGCTCAATCTCTCTAACTGATAT 882
Query 908 ACTCTTGGTTATTGGTGCTGTTCTCATTGGTTATGCTACTTGTATGCTCCAGCAGGGCTT 967
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 883 ACTCTTGGTTATTGGTGCTGTTCTCATTGGTTATGCTACTTGTTTGCTCCAGCAGGGTTT 942
Query 968 TGGAAATTCTTTCTTCTCAAAGACGCAGGTAGGATCAGAAACCAGCTATGAAGAAGAGCA 1027
|||||||||||||||||||||||||||| ||| |||||||||||||| |||||| |||||
Sbjct 943 TGGAAATTCTTTCTTCTCAAAGACGCAGCTAGAATCAGAAACCAGCTTTGAAGAGGAGCA 1002
Query 1028 TCCAGGAAAAGAGAAACTCTCCCGGCCTGTCCATGAGA-AAACAATAACCAAGGAAGAAC 1086
|||||| ||||||||||||||||| ||||||||||||| ||| | |||||||||||||||
Sbjct 1003 TCCAGGCAAAGAGAAACTCTCCCGACCTGTCCATGAGACAAA-AGTAACCAAGGAAGAAC 1061
Query 1087 CTGGTTGGCCATCATTTGGGCAACTCCTTACTGATCTCTGCAAACTTGCTCTCGAGTTTA 1146
||||||||||||| |||||||||||| ||| ||||||||||||||| |||||||| ||||
Sbjct 1062 CTGGTTGGCCATCGTTTGGGCAACTCATTATTGATCTCTGCAAACTCGCTCTCGATTTTA 1121
Query 1147 TAACCAGCCACCTAGTTCCAGCCCGATTCCA-AACCAACCCCAATCTAAGGCCATTAAAA 1205
|||||||||||||||||||| ||||||| || ||||| || ||||||||||||||||||
Sbjct 1122 TAACCAGCCACCTAGTTCCAACCCGATT-CACAACCAGCCATAATCTAAGGCCATTAAAA 1180
Query 1206 GATAGACTCATAATGCCTGAAGACGAACAAGAACCACCTCGAGTCCAAAGGCATACTGCC 1265
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GATAGACTCAAAATGCCTGAAGACGAACAAGAACCACCTCGAGTCCAAAGGCATACTGCC 1240
Query 1266 CCAGCACCAATCTCAGAATCCCGACATGCTCACTTACCTAAAGCTGATGATAGTTACCCT 1325
|||||||||||||| ||||| |||||||| ||| | |||||||||||||||||||||||
Sbjct 1241 CCAGCACCAATCTCTGAATCGCGACATGCCCACATGCCTAAAGCTGATGATAGTTACCCG 1300
Query 1326 GAACATAAGACGCCAAAGCTAAGATCAAGTAGTGTAATGAAGGACCCTACTTTGTCATCA 1385
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1301 GAACATAAGACCCCAAAGCTAAGATCAAGTAGTGTAATGAAGGACCCTGCTTTGTCAGCA 1360
Query 1386 TCCAAGCACCATCGGACATCATCAAAACGGCAGGACTATGCTCAGTTCTATGCCTCGGGA 1445
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1361 TCCAAGCACCACCGGTCATCATCAAAACGGCAGGACTATGCTCAGTTCTATGCCTCAGGA 1420
Query 1446 GAGGTTGCCCAACCGAAGATCCATAAAGAGCGGTCAAGGCGTCGTCATAGAGATAAAACA 1505
|||||| ||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1421 GAGGTTACCCCACCGAAGATCCATAAAGAGCGATCAAGGCGTCGCCATAGAGATAAAACA 1480
Query 1506 ACCGAGACAGAACCAAAGCCAACACCATCAGATACGGTGAAGCCTGTGGAGTACAGTAAT 1565
||||| || |||||||||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 1481 ACCGAAACGGAACCAAAGCTAACAACATCAGATACGGTGAAGCCTGTAGAGTACAGTAAT 1540
Query 1566 AGTTCAAAGTTTGATCATTACAACATGAGGAGCAGCAAGTATGGACCTGAAACTCCATTT 1625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 AGTTCAAAGTTTGATCATTACAACATGAGGAGCAGCAAGTATGGACCTGAAACTCCATTT 1600
Query 1626 CGATTCTAGAAAGTAAAATCACATACTCATTAGAACCCTTTTCTGAGTATGTTGTGCCCT 1685
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1601 CGATTCTAGAAAGTAAAATCACATCCTCATCAGAACCCTTTTCTGAGTATGTTGTGCCCT 1660
Query 1686 TTCTTTTGTCCTTGGTTTGAGGAGATTCCTTATGTTTTCTTTTTGTTAGTTACTAAGAAA 1745
|||||| |||||| |||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1661 TTCTTTGGTCCTTACTTTGGGGAGATTCATTATGTTTTCTTTTTGTTAGTTACTAAGAAA 1720
Query 1746 ATCTTATTACACAGATGATGAAAAAGAGGTTAAA-GGCTTTTCTTGTAACGAAGGATTGA 1804
|||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||
Sbjct 1721 ATCTTATTACACAGATGAAGAAAAAGAAGTTAAAAGGCTTTTCTTGTAACGAAGGATTGA 1780
Query 1805 TGAATCATGACTGAAAATCTGATGTATTATGAACTT 1840
|||||||| ||||||| |||||| | || |||||||
Sbjct 1781 TGAATCATTACTGAAACTCTGATTTCTTTTGAACTT 1816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70162231290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5