BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14870.1
Length=1820
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478905 jgi|Araly1|478905|fgenesh2_kg.3__1606__AT3G14870.3 2213 0.0
> Ahg478905 jgi|Araly1|478905|fgenesh2_kg.3__1606__AT3G14870.3
Length=1637
Score = 2213 bits (1198), Expect = 0.0
Identities = 1433/1544 (93%), Gaps = 26/1544 (2%)
Strand=Plus/Plus
Query 251 GATGGAGTCTGTGAAACCATTGGATGTTGTTTCTTCAGGAAAAGGAAAACTCAGACGCAC 310
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 113 GATGGAGTCTGTGAAACCATTGGATGTTGTTGCTTCAGGAAAAGGAAAACTCAGACGCAC 172
Query 311 ATTTGCTAAAGTCATCAACATGAAAAAGCTAACCGGTGTTGTTCCAGAAGGTAACAACAA 370
|||||||||||| ||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 173 ATTTGCTAAAGTTGTCAACATAAAAAAGCTAACCGGTGTTGTTCCAGAAGG---CGACAA 229
Query 371 GGTTGAAAGAGTGAAGAAGAGCCAAGAAAAGGTGAAGTTGGATAAAGATTTAGCAAAGAA 430
|||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||||
Sbjct 230 GGTTGAGAGAGTGAAGAAGAGCCAAGAAAAGCTGAAGCTGGATAAAGATTTAGTGAAGAA 289
Query 431 TGCTGCAAATCTGTCTGAGTCCTTTGACAAGCTGGAGGAAGAGTATGAGAAAAGACTGGC 490
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 290 TGCTGCAAATCTGTCTGAGTCATTTGACAAGCTGGAGGAAGAGTATGAGAAAAGACTGGC 349
Query 491 CATGGAGGCTCTTCTTGCAAAGCTGTTTGCTACGATTTCTTCGATAAAATCTGGTTATGC 550
||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 350 TATGGAAGCTCTTCTTGCAAAGCTGTTTGCTACGATATCTTCCATAAAATCTGGTTATGC 409
Query 551 GCAGTTGCAGTATGCTCAGTCTCCTTATGATCCAAATGGGATTCAGAAAGCAGATAACTT 610
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 410 GCAGTTGCAGTATGCTCAGTCTCCTTATGACCCAAATGGGATTCAGAAAGCAGACAACTT 469
Query 611 GGTAGTAGCAGAGCTGAAGACATTATCAGAGCTGAAACAGAGTTTCTTGAAGAAACAGCT 670
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 470 GGTAGTAGCAGAGCTGAAGACATTATCAGAGCTGAAACAGAGTTTCTTGAAGAACCAGCT 529
Query 671 TGATCCTAATCCTGATAGAACTCTTGTTCTTGCGGAGATTCAAGAGCTAAGAAGCGTCTT 730
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 530 TGATCCTAATCCTGATAGAACTCTTGTTCTTGCGGAGATTCAAGAGCTGAGAAGCGTCTT 589
Query 731 AAAGACTTATGAGATCATGGGGAAGAAGCTGGAGTGTCAGTTAAAGCTCAAAGACTCTGA 790
||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 590 AAAGACTTATGAGATCACGGGGAAGAAGCTTGAGTGTCAGTTAAAGCTTAAAGAATCTGA 649
Query 791 GATCATATTTCTCAAAGAAAAGTTTCAAGAATCCATGACTCAGAACAAGTTGATGGAGAA 850
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 650 GATCATATTTCTTAAAGAAAAGTTTCAAGAATCCATGAGTCAGAACAAGTTGATGGAGAA 709
Query 851 GAGATTAAACCAAAGTGGCCAACTTTGCAATCCATTGGATCATAATCTTCATCTATCGGC 910
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 GAGACTAAACCAAAGTGGCCAACTTTGCAATCCATTGGATCATAATCTTCATCTATCGGC 769
Query 911 GGTAAGTTCGACCCATTTCGTTACTTATCTGCACCACACTGTCAAATCCATCCGAGGATT 970
| ||| | | |||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 770 GCTAAATCCAACCCATTTCGCTACTTATCTGCACCACACTGTCAAATCAATCCGAGGATT 829
Query 971 CGTCAAGTTGATGGTTGAGCAGATGAAACTCGCTGCTTGGGACATCGATATGGCTGCTGA 1030
|||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 830 CGTCCAGTCAATGATTGAGCAGATGAAACTCGCAGCTTGGGACATCGATATGGCTGCTGA 889
Query 1031 GTT-AATTCAGCCTGATGTACTCTATTACAAGCAAGACCACAAGTGTTTTGCCTTGGAGC 1089
|| || || ||||| || ||||||||||||||||||| ||||||||||| || ||||
Sbjct 890 -TTCGATACAACCTGAAGTGTTCTATTACAAGCAAGACCATAAGTGTTTTGCTTTCGAGC 948
Query 1090 ATTATGTCTGCAAGATAATGCTTGAAGCTTTTCAACTACCTTACTTCTCAAACGAATCAT 1149
|||| || |||||||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 949 ATTACGTTTGCAAGATAATGTTTGAAGCGTTTCATCTACCTTACTTCTCAAACGAATCAT 1008
Query 1150 CGAAGAAGACGAGCAGAGAAGACAAAGCA-ATGTTCTTTGAGAGATTCACAGAGCTTAGA 1208
||||||||| |||||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1009 CGAAGAAGAAGAGCAGAGAAGACAGAG-AGATGTTCTTTGAGAGATTCACAGAGCTTAGA 1067
Query 1209 TCGATGAAACCAAGAGAGTATTTAGCATCTCGGCCTAAATCAAGATTGGCTAAGTTTTGC 1268
||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1068 TCGATGAAACCAAAAGAGTACTTAGCATCACGGCCTAAATCAAGATTGGCTAAGTTTTGC 1127
Query 1269 AGAACTAAGTATTTGCAGCTCATACATCCAAAGATGGAGCAGGCATTCTTCGGACATTTG 1328
||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1128 AGAGGGAAGTATTTGCAGCTCATACATCCAAAGATGGAGCACGCGTTCTTCGGACATTTG 1187
Query 1329 CATCAAAGAAACCAAGTCACTGCAGGGGAGTTTCCAGAGACGAGCTTGTGCACTGCGTTT 1388
|||| |||||||||||||| |||||| |||||||| ||||| |||||||| |||||||||
Sbjct 1188 CATCTAAGAAACCAAGTCAGTGCAGGTGAGTTTCCGGAGACAAGCTTGTGTACTGCGTTT 1247
Query 1389 CTCGAAATGGCGAAAAGGGTTTGGCTTTTACATTGCCTTGCTTTCTCCTTCGATCCTGAA 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1248 CTCGAAATGGCGAAAAGGGTTTGGCTTTTACATTGCCTTGCTTTCTCCTTCGACCCTGAA 1307
Query 1449 GCTTCAATCTTTCAAGTATCTAGAGGTTGCAGATTCTCCGAAGTGTACATGAAGAGCGTG 1508
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1308 GCTTCAATCTTTCAAGTATCTAGAGGATGCAGATTCTCCGAAGTGTACATGAAGAGCGTG 1367
Query 1509 TCGGAGGAAGCGTTTTTCTCAC--C-GGAGCAAGAAGAAAGCTCGTCGGAAACTGAACCG 1565
||||||||||||||||||| | | |||| ||||||||||||||||||||||||| |||
Sbjct 1368 ACGGAGGAAGCGTTTTTCTCTCGGCCGGAGGAAGAAGAAAGCTCGTCGGAAACTGAGCCG 1427
Query 1566 GGGGTTGCGTTTACGGTTGTTCCTGGGTTTAGAATTGGGAAAACGACGATACAATGTGAG 1625
|| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1428 GGAGTTGCGTTTACGGTGGTTCCTGGGTTTAGAATTGGGAAAACGTCGATACAATGTGAG 1487
Query 1626 GTCTACCTCTCGCGTTCATGTCAACGCCGTCAGAGCAGATAGATTCCGGTGATGACGTCA 1685
|| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 1488 GTTTACCTCTCGCGTTCATGTCAACGCCGTCCGATCAGATAGATTCCGGCGATGACGTCA 1547
Query 1686 CAGGGGTATTAGGGTAATTTATCT--TGGGGAACTTTTTGGGGGTAGGAAAATATATGAG 1743
|||||||||||| |||||||| | ||||| |||||||||||| || | ||
Sbjct 1548 CAGGGGTATTAGTGTAATTTAGGTGGTGGGGGACTTTTTGGGGG-AG-A--------GA- 1596
Query 1744 AGAAAATTTGTTGACCGTTGGATTAAGAGAAGAGGCAAGTATGT 1787
| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1597 A-AA--TTTGCTGACCGTTGGATTAAGAGAAGAGGCAAGTATGT 1637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68333899530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5