BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14880.1
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341612 jgi|Araly1|341612|fgenesh1_pg.C_scaffold_3001375 1059 0.0
> Ahg341612 jgi|Araly1|341612|fgenesh1_pg.C_scaffold_3001375
Length=735
Score = 1059 bits (573), Expect = 0.0
Identities = 682/736 (93%), Gaps = 2/736 (0%)
Strand=Plus/Plus
Query 1 ATGAGCCAAGAGACAGCGATAGCAAGCTTCAAGAAATTCCAACAGTCATGGATCGAGCAG 60
|||||||||||| |||||||| | |||||||||||||||||| ||||||||||||| |||
Sbjct 1 ATGAGCCAAGAGGCAGCGATAACGAGCTTCAAGAAATTCCAAGAGTCATGGATCGATCAG 60
Query 61 CTACGAAACCACCTGAACCACCTCCGCTCCGCCCAAAACCATCACCGGAACTCTGCTACC 120
||||||||||||||||||||||||||||||| ||||||||| |||||||| || ||||||
Sbjct 61 CTACGAAACCACCTGAACCACCTCCGCTCCGTCCAAAACCACCACCGGAATTCCGCTACC 120
Query 121 GGTGATGAGGAACGGTTAAGGGAGGCTGTGGACAGAGTGATGGAACACTTTAGAGAATAT 180
|| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 121 GGCGATGAGGAACGGTTAAGGGAAGCTGTGGAGAGAGTGATGGAACACTTTAGAGAGTAC 180
Query 181 CACAGGGCCAAGTGGGCTG-CGACGGATAAAGACGTCATCGAAGTTATGGCTTCTCCTTG 239
||||||||||||||||| | ||||||| |||||||| |||| |||||||||| |||||||
Sbjct 181 CACAGGGCCAAGTGGGC-GACGACGGAGAAAGACGTGATCGGAGTTATGGCTACTCCTTG 239
Query 240 GGCTTCAGCTCTTGAACGGTCGCTTCAGTGGGTCGGTGGTTGGCGACCAACCACCTTGTT 299
||||||||| ||||||||||| || || ||||||||||||||||||||||| ||||||||
Sbjct 240 GGCTTCAGCCCTTGAACGGTCACTCCATTGGGTCGGTGGTTGGCGACCAACAACCTTGTT 299
Query 300 CCATCTGGTTTACACTGAGTCGAGTATTTTATTTGAGTCTCGTATCGTTGATATACTTCG 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TCATCTGGTTTACACTGAGTCGAGTATTTTATTTGAGTCTCGTATCGTTGATATACTTCG 359
Query 360 TGGCTTTCGCACCGGTGATCTCAGTGATCTCTCCCCTTCTCAGTTCAGGGTTCCATTTGT 419
|||||||||||| ||||| ||||| |||||||| || ||||||||||||||| ||||||
Sbjct 360 TGGCTTTCGCACAGGTGACCTCAGCGATCTCTCTCCGTCTCAGTTCAGGGTTAAATTTGT 419
Query 420 CAAAGGCAGGACGGTAAGTGAGCTACAATGTGAGACCGTGAAGGAAGAGAATGCGATAAC 479
||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||
Sbjct 420 CAAAGGCAGGACGGTGAGTGAGCTACAATGTGAGACGGTAAAAGAAGAGAACACGATAAC 479
Query 480 GGAAGAGTTGTCGGAGTGGCAAGACGATGCGAGTGACCTTGTCATGGGGACATCGTCAGA 539
||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 480 GGACGAGTTATCGGAGTGGCAAGACGATGCGAGTGACCTCGTCATGGGGACCTCTTCCGA 539
Query 540 TCCCGACCAGAGGATCCGACGGCTAGCAGAAATCGTCCACCGAACTGATGATCTGCGACT 599
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TCCCGAGCAGAGGATCCGACGGCTAGCAGAAATCGTCCATCGAACTGATGATCTGCGACT 599
Query 600 GAGAACGATCACACGTGTGGTGGAGGTCTTGAGTCCGCTCCAACAAGCGGAGTTTCTTGT 659
||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||| |
Sbjct 600 GAGAACGATCACACGCGTGGTGGAGCTCCTGAGTCCGCTCCAACAAGCAGAGTTTCTTAT 659
Query 660 CGCTGCGGCTGAGCTTCGTACAGGCGTTGCTGGTTGGGGGACTAGCCACGACCGTCGTCG 719
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 660 CGCTGCGGCTGAGCTTCGTACCGGCGTTGCTGGTTGGGGGACTAGCCATGACCGTCGTCG 719
Query 720 AAGTTCCGAAGTTTAA 735
||||||||||||||||
Sbjct 720 AAGTTCCGAAGTTTAA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27067271070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5