BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14890.1
Length=2299
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904413 jgi|Araly1|904413|Al_scaffold_0003_1541 3029 0.0
> Ahg904413 jgi|Araly1|904413|Al_scaffold_0003_1541
Length=2172
Score = 3029 bits (1640), Expect = 0.0
Identities = 1959/2108 (93%), Gaps = 42/2108 (2%)
Strand=Plus/Plus
Query 2 ATGGCTATATGATTACAGTAGCCCCCTTCGTGTCTCTTCGTTTCCAGTTCCCTCTTTATA 61
||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| | |
Sbjct 92 ATGGCTATATGATTAAAGTAGTCCCCTTCGTGTCTCTTCGTTTCCTTTTCCCTC-TCCT- 149
Query 62 TAATAAATCGCTCCACTCTCTTTTTCCGAGAAAGAA-CACAGTATCTCGTCTACAA-CAC 119
| |||||||| ||||||||||| ||||||| || || ||||||||||| ||||||| ||
Sbjct 150 T-ATAAATCGTTCCACTCTCTTCTTCCGAG-AACAACCACAGTATCTCCTCTACAACCA- 206
Query 120 CTGTCACATTTTGAGAACAACGGCGAAAACAATGCCGGTGGTTGCTGAGTACGCGAAGTC 179
| || |||||||||| || | |||||||||||| ||||||||||||||||| ||
Sbjct 207 CAGTTACATTTTGAG---AA---C---AACAATGCCGGTCGTTGCTGAGTACGCGAAATC 257
Query 180 GAATCGGTCGTCGTGTAGGTCATGTTCGAACAAGATAGCTGTGAAATCGCTTAGGTTAGG 239
||||| |||||||||| |||||| ||||| ||||| |||||||||||||||||||||||
Sbjct 258 CAATCGATCGTCGTGTAAGTCATGCTCGAAAAAGATCGCTGTGAAATCGCTTAGGTTAGG 317
Query 240 GTTGATTAGCAAAGGACGTGGCGGGGTTGACATGACCAGGTGGCACCATTTCGATTGTTT 299
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 GTTAATTAGCAAAGGACCTGGCGGGGTTGACATGACCAGGTGGCACCATTTCGATTGTTT 377
Query 300 TCCGACTGATTCTGAGTCGATTGCTTCCGTTGATGATATTCAAGGCTTATCCGCTTTAGA 359
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TCCGACTGATTCGGAATCGATTGCTTCCGTTGATGATATTCAAGGCTTATCCGCTTTAGA 437
Query 360 GAAAGAAGATCAAGATGCTTTGACGAAATTGGTGGAACAATGTGGTAAAGTACCTGC-aa 418
|||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct 438 GAAAGAAGATCAGGATGCTTTGACGAAATTGGTGGAACAATGTGGTCAAGAACCTGCTAA 497
Query 419 aaaa-a-CCTGATGAGAAGAAGGGGAAGGCTAAAAAGCATATAATGGGGCCGAAGGGGCT 476
|||| | | |||||||||||||| |||| ||| |||| | || | ||||||||| || |
Sbjct 498 AAAACAGCGTGATGAGAAGAAGGAAAAGGTTAAGAAGCCTTTAGTTGGGCCGAAGAGGTT 557
Query 477 T-ACGAAGGCGGCAACATCTTCAAAAGTTATTGCTGATAATGCGAAATCGAGCAGATCAT 535
| ||| |||| | ||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 558 TAACG-AGGC-G--ACAACTTCAAAAGTTATTGCTGATTATGCGAAATCGAGCAGATCAT 613
Query 536 CATGCAACAGGTGTTCTCAGACAATCGTTTCAAAGGATCTGAGAGTGGGGCTGGTTACTG 595
||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 614 CATGCAAGAGGTGCTCTCAGACCATCGTTTCAAAGGATCTGAGAGTGGGGCTGGTGACT- 672
Query 596 A-AGACTCCAGGGGATTTGATATAACAAGATGGCATCACTTGGGTTGTTTTCCCATTGAT 654
| |||| |||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 673 AGAGACGCCAGGGGATTTGATGTGACAAGCTGGCATCACTTGGGTTGTTTTCCCATTGAC 732
Query 655 TTTCATCCAATTGATTCTGTGGAGGACATTGGTGGATATTCATCGCTTGAGAAAGGTGAC 714
| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 733 TGGCATCCGATTGATTCTGTGGAGGACGTTGGTGGATATTCATCACTTGAGAAAGGTGAC 792
Query 715 CAGATGGAATTAAAGTATTTGGCCGAAGTAAACAAGAAGGATAAAACTTTGATAGATGAT 774
|||| ||||||| || | ||||||||| ||| | |||||||| |||||||||||||||
Sbjct 793 CAGAAGGAATTACAGCAATTGGCCGAACTAAGCGAGAAGGAT---ACTTTGATAGATGAT 849
Query 775 GTCCAGAAGATGGATGAAGGTGATGATGAAGCTATAGCTGATAATGAGCTAACGGAGGAG 834
|||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||||
Sbjct 850 GTCCAGAAGATGGATGAAGGTGATGATGAATCTGTAGCTGATAATGAGCTAACTGAGGAG 909
Query 835 ACCAAAAAAGGAAAACATTCTCCTGTTGCAAAATTGGTGGAACAACCTGGCGAGCCTGCA 894
|| ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 910 ACAAAAAAAGGAAAACATTCCCCGGTTGCAAAATTGGTGGAACAACCTGGCGAGCCTGCA 969
Query 895 AAAGAAG---ATGAGGATGAAGAGAGTAAAAA-GCCTGCATCAGATGAAATAAGTGAGCA 950
||||||| ||||||||||||||| |||||| ||||||||| ||||||||||||| |||
Sbjct 970 AAAGAAGTCAATGAGGATGAAGAGA-TAAAAATGCCTGCATCTGATGAAATAAGTGGGCA 1028
Query 951 GAAGACTAAGGATG-TGAAAAATTCTCCTGATTCTTCAAAAGTTATTTCTGAGTATGCGA 1009
||||| |||||| | || | |||||||||||||||||||||||| ||||||||||| |
Sbjct 1029 GAAGAATAAGGA-GACGACAGGTTCTCCTGATTCTTCAAAAGTTATCTCTGAGTATGCAA 1087
Query 1010 AATCGAGCAGATCAACATGCAAGAAGTGCTCTCAGACTATCGCTGCAAAGGAACTGAGGT 1069
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1088 AATCGAGCAGATCAACGTGCAAGAAATGCTCTCAGACTATCGCTGCAAAGGAACTGAGGT 1147
Query 1070 TGGGGCTAGTGACCAGAAACTTCCGTGGCTTTGATATGAAACAATGGCATCACTTGGGTT 1129
|||| || ||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1148 TGGGCCTGGTGACCAGAAACTTCCGTGGCTTTGATATGACACAATGGCATCACGTGGGTT 1207
Query 1130 GTTTTCCTGTCGACTCTGATCCAATT-GTTTCGGTAGAGGACATTGGTGGATTTTCAGAA 1188
|||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||
Sbjct 1208 GTTTTCCTGTCGACTCTGATCCAATTAG-TTCTGTAGTGGACATTGGTGGATTTTCAGAA 1266
Query 1189 CTGCAGAGTGGTGATCAGGATGCATTAAAGGAATTGGTCCAACAATGCGGGAAGCA-GAC 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1267 CTGCAGAGTGGTGATCAGGATGCATTAAAGGAATTGGTCCAACAATGCGGGAAG-AGGAC 1325
Query 1248 TTTGGTAGATAAGATGGATGAAGATAATGATGACA-CTGAAGCTAAAATTAAGCTAACTG 1306
||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct 1326 TTTGGTAGATAAGATGGATGAAGATAATGATGA-ATCTGAAGCTAAAAATAAGCTAACTG 1384
Query 1307 AGGAGACAAACAAAAGAAAACATTCTGAGGTTGGGGAGATGGTGGAAGAAGATGAATCGC 1366
||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||
Sbjct 1385 AGGAGACAAACAAAAGAAAACATTCCGAGGTTGGGGAGATAGTGGAAAAAGATGAATCGC 1444
Query 1367 TAACTAAAGCGAAACAACAGATGGCTAAAACACATAAGGTGAACATGAGTGAGTCAACTT 1426
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||
Sbjct 1445 TAACTAAAGCGAACCAACACATGGCTAAAACACATAAGGTGAACATCAGTGAGTCGACTT 1504
Query 1427 CTCAGGTCGAGGTTGAAGCAGAAATCACTCTTTCAGCGTCTGATGTGAAGGATAAGTACA 1486
||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1505 CTCAGGTCGAGGTTGAAACAGAAATCTCTCTTTCAGCTTCTGATGTGAAGGATAAGTACA 1564
Query 1487 GGGATGCCAATCTATTACCAAAATGGAAAGCTTTTGAGACAGTTATATTCCTTGAGCGGG 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1565 GGGATGCCAATCTATTACCAAAATGGAAAGCTTTTGAGACAGTTATATTCCTTGAGCGGG 1624
Query 1547 ATGATGGTCTTAATGATTCAGAAAAAATAGCTGCATTTGACTTTGATGGATGCCTTGCAA 1606
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1625 ATGATGGTCTTAATGATTCAGAGAAAATAGCTGCATTTGACTTTGATGGATGCCTTGCAA 1684
Query 1607 AAACATCTGTGAAAATAGTAGGGGCAGATGCATGGTCCCTAATGTATCCTTCCATTCCTG 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1685 AAACATCTGTGAAAATAGTAGGGGCAGATGCATGGTCCCTAATGTATCCTTCCATTCCTG 1744
Query 1667 AGAAACTGCAAAGTCTGCACGATCAAGGCTATAAGCTGGTCATTTTCACAAATGAATCCA 1726
| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1745 AAAAACTGCAAAGTCTGTACAATCAAGGCTATAAGCTGGTCATTTTCACAAATGAATCCA 1804
Query 1727 ACATTGATCGATGGAAGAACAAGCGGCAAGCTGCTGTAGATTCGAAAATTGGACGGCTCA 1786
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1805 ACATTGATCGATGGAAGAACAAGCGGCAAGCTGCTGTAGATTCGAAAATCGGACGTCTCA 1864
Query 1787 ACAGTTTTATCGAGCGCGTGAAGGTCCCCATTCAGGTGTTTATAGCCTGTGGAGTCTCAA 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1865 ACAGTTTTATCGAGCGCGTGAAGGTCCCCATTCAGGTGTTTATAGCCTGTGGAGTCTCAA 1924
Query 1847 GTTCTGGTGGTAAAGGTGGTAAAGATGACCTTTACCGCAAACCCAAGGCTGGAATGTGGC 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 GTTCTGGTGGTAAAGGTGGTAAAGATGACCTTTACCGCAAACCCAAGGCTGGAATGTGGC 1984
Query 1907 AACTCATGAAGAAGCATTTTAACTCTGGAATTGCAATTGATATGGATAAATCCTTCTACG 1966
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1985 AACTCATGAAGAAGCACTTTAACTCTGGAATTGCAATTGATATGGATAAATCCTTCTACG 2044
Query 1967 TTGGGGATGCAGCTGGAAGAAAAATGGATCACAGCGACGCTGACATCAAATTTGCACAGG 2026
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2045 TTGGGGATGCAGCCGGAAGAAAAATGGATCATAGCGACGCTGACATCAAATTTGCACAGG 2104
Query 2027 CGAGTGGGCTAAAGTTTTTTACCCCGGAGGAATACTTTATCCCCTCAAGTACATCGCCAG 2086
|||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 2105 CGAGTGGGCTAAAGTTTTATACCCCGGAGGAATACTTTATCCCCGCAAGTACATCGGCAG 2164
Query 2087 GGACTTAG 2094
||||||||
Sbjct 2165 GGACTTAG 2172
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86579126885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5