BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14910.1
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478912 jgi|Araly1|478912|fgenesh2_kg.3__1613__AT3G14910.1 2266 0.0
> Ahg478912 jgi|Araly1|478912|fgenesh2_kg.3__1613__AT3G14910.1
Length=1559
Score = 2266 bits (1227), Expect = 0.0
Identities = 1478/1594 (93%), Gaps = 38/1594 (2%)
Strand=Plus/Plus
Query 1 TTAGCGATGGCGAAGAGGATCCACCTGACGGAACTAGGCTGCATCGCGTGTGAGGAACTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTAGCGATGGCGAAGAGGATCCACCTGACGGAACTAGGCTGCATCGCGTGTGAGGAACTT 60
Query 61 A-CTGAGCTCGGTGCGGGTAAAGAAGGATGGCTCGTGAACAATCCAAACCTTTTGAGTGC 119
| | ||||||||||||||||||||||| ||||||||||| ||||||||||| ||| ||||
Sbjct 61 AGC-GAGCTCGGTGCGGGTAAAGAAGGGTGGCTCGTGAATAATCCAAACCTATTGTGTGC 119
Query 120 ACTTGATTCTCACTCTTTAGCCCTAGCCAATCGATTTCTCATATTGATTGTGAATTGGGG 179
||| ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct 120 ACTCGATTCTCACTCTTTAGCCCTAGCTAACCGATTTCTCATCTTGATTGTGAATTGGGG 179
Query 180 TGATCCTGATGCGCCTCGTGTCAAGATCAGACCTGATCTGTCTCCGATTGAGGCTGAGTC 239
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 180 TGATCCTGATGCGCCTCGTGTTAAGATCAGACCCGATCTGTCTCCGATTGAGGCTGAGTC 239
Query 240 GATTACGGCGATCGAGTGGTTAGTGTTTGATGATGTCAGAGTCGTCGTTGCGGGGACTTC 299
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 240 GATTACGGCGATCGAATGGTTAGTGTTTGATGACGTCAGAGTCGTCGTTGCGGGGACTTC 299
Query 300 TTGTGGATATCTCTTGGTTTACTCTGTTACCGGTGATCTGATCCATAAGCAGATTGTACA 359
|||||| ||||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 300 TTGTGGGTATCTCTTGGTTTACTCTGTTGCCGGTGATCTGATTCATAAGCAGATGGTACA 359
Query 360 TCAAAGCCGTATATTAAAAATAAGAGTTCGAGGAACTAAGAAAGATTTGATGCAAGAGAC 419
| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 360 CCCAAGTCGTATATTGAAAATAAGAGTTCGAGGAACTAAGAAGGATTTGATGCAAGAGAC 419
Query 420 ATCCTCTGAGGAGATTTGCATTGTATTGCCTGGTGTTATTGCCCGCTTTGATGGCTCTAA 479
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 420 ATCCTCTGAGGAGATTTGCATTGTATTGCCTGGCATTATTGCCCGCTTTGATGGCTCCAA 479
Query 480 CATTCAGAGTATGGTTCAGAAATGGGTTCAAGAGAAGAATTCGAACTTTTGGGACCAAAA 539
|||||||||||| ||||||||||| |||||||||||||||| || ||||||||||||||
Sbjct 480 TATTCAGAGTATGCTTCAGAAATGGTTTCAAGAGAAGAATTCTAATTTTTGGGACCAAAA 539
Query 540 GAATAGAAAGGGAGATGCAGAAGATACTGGTAGCTTGTACCAACGTCTACCGTATCAGAT 599
|||||||||||| |||| ||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 540 GAATAGAAAGGGTGATGTAGAAGATTCTGGTAGTTTGTACCAACGACTACCGTATCAGAT 599
Query 600 ATGGAATGTCAACAAGAATGGTGTGTGTGTTGATGCTACTGTCACTGGCGTAATGCCTCC 659
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 600 ATGGAATGTCAACAAGAATGGTGTGTGCGTTGATGCTACTGTCACTGGCGTAATGCCTCC 659
Query 660 TCCGTTACTGGAACTCCAGTCAAGTCAACGTTATTATTGTGCAGTGACCATTGGAGAGGA 719
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TCCGTTACTAGAACTTCAGTCAAGTCAACGTTATTATTGTGCAGTGACCATTGGAGAGGA 719
Query 720 TTCTGTAATCTCAGCTTACAGGCTCTCAGAAGATAGAGGGAGATCACTTGTTGGAGCGAT 779
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGCTGTAATCTCAGCTTACAGGCTCTCAGAAGATAGAGGGAGATCACTTGTTGGAGCGAT 779
Query 780 TCTATCAAAAGTTGTGCCTGCAGCTGCTTCAACGATAGCTTCTTTCTCTAAACTGATCTG 839
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 780 TCTTTCAAAAGTTGTGCCTGCAGCTGCTTCAACCATAGCTTCTTTTTCTAAACTGATCTG 839
Query 840 GAGAAGTAATGATCAATCACCAAAGCGAAAGCCAGAAGCCAAGACTCAGTCATTCGCTCG 899
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
Sbjct 840 GAGAAGTAATGATCAATCACCAAAGCGAAAACCAGAAGCCAAGACCCAGTCATTCGCTAG 899
Query 900 AGCATCGTCCTTGACATGTATAAAGGACTACCCAAGGAAAGGAGAGAAGCTCACGTTATC 959
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 900 AGCATCATCCTTGACATGTATAAAGGACTACCCAAGGAAAGGCGAGAAGCTCACGTTATC 959
Query 960 CCCGAGTGGAACATTAGCTGCCATAACAGATTCTCTTGGTCGAATACTTCTGCTAGACAC 1019
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 960 CCCAAGTGGGACATTAGCTGCGATAACAGATTCTCTTGGTCGAATACTTCTGCTAGATAC 1019
Query 1020 TCAAGCTCTTGTAGTTGTCCGGCTATGGAAGGGTTATCGTGATGCAAGCTGTGTGTTCAT 1079
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1020 TCAAGCTCTCGTAGTTGTCCGGCTATGGAAGGGTTATCGTGATGCAAGCTGCGTGTTCAT 1079
Query 1080 GGAGATGTTAGCCAAAAAAGATAAAGGAAAATCTGTGATTCACACAGAACCGGTAAAAAG 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 GGAGATGTTAGCCAAAAAAGATAAAGGAAAATCTGTAATTCACACAGAACCGGTAAAAAG 1139
Query 1140 TGATTATTGTCTATGCTTAGCCATTCATGCTCCACGCAAAGGCATCATCGAGGTGTGGCA 1199
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 CGATTACTGTCTATGCTTAGCCATTCACGCTCCACGCAAAGGCATCATCGAGGTGTGGCA 1199
Query 1200 GATGAGAACGGGGCCACGTCTTCTAACGATTCAATGCGCAAAAGGTAGCAAATTGTTGCA 1259
||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 1200 GATGAGAACGGGGCCACGTCTTCTAACCATTCAATGTGCAAACGGTAGCAAATTGTTGCA 1259
Query 1260 GCCAGCGTACAGGTTTGGATCAAATTCTTCATCTTCTCCTTACATTCCTCTTGAAGTCTT 1319
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1260 GCCAGCGTACAGGTTTGGATCAAATTCTTCATCATCTCCTTATATTCCTCTTGAAGTCTT 1319
Query 1320 CTTACTCAATGGAGATTCCGGCCAAGTCTCTATGCTCAACCGATCTCTCTCTTAAAATAT 1379
||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1320 CTTACTCAATGGAGATTCCGGCCAAGTCTCTATGCTCAACCGA--TCTCTC--------T 1369
Query 1380 CTCTAAACTAACATATCACGAATTTGATATATTCACCAACTTTCTTCAGtttttttCTCA 1439
|| | || || |||| | | || | || ||| || || |||||||||||
Sbjct 1370 CT-T-AA--AA-ATAT--C-----T-CTA-A---ACTAAC-TT-ATC--TTTTTTTCTCA 1408
Query 1440 AACCTTTTGTCAATAGCTAAGCCAAGTCTCTAATTGATTATAAGTGC-AATTGATGAACA 1498
||||||||||| ||||||||||||||||||||||| || || | | || | ||||
Sbjct 1409 AACCTTTTGTCCATAGCTAAGCCAAGTCTCTAATTAATGATGTTTTCTAA-ACAAAAACA 1467
Query 1499 AGAACTTTGCAATGATTCTTAATGTGTAGTAGTAATCGGTGTTTATGTTTATCTTTTGAT 1558
|||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||
Sbjct 1468 AGAACTTTGCAATGATTCTTAAAGTGTAGTAG---TCAGTGTTTATGTTTTTCTTTTGAT 1524
Query 1559 AGTTGGATTTGATCATATGATTGTAACTAGATAC 1592
||||||||||||||||||||||||||||||||||
Sbjct 1525 AGTTGGATTTGATCATATGATTGTAACTAGATAC 1558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60449218815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5