BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14920.1
Length=1999
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929273 jgi|Araly1|929273|scaffold_301730.1 2771 0.0
> Ahg929273 jgi|Araly1|929273|scaffold_301730.1
Length=1876
Score = 2771 bits (1500), Expect = 0.0
Identities = 1736/1851 (94%), Gaps = 12/1851 (1%)
Strand=Plus/Plus
Query 1 ATGActtcctctcttcctccactcatcttcttcttcaccg---tcttctt---cgtccac 54
|||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||
Sbjct 21 ATGACTTCCTCTCTTCCTCCACCCATCATCTTCTTCACCGTCTTCTTCTTCGCCGTCCAT 80
Query 55 tctctctccgccgtctccgatcttcACGAAACCAGATCACGTTTCAAAcctcctcagttc 114
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 81 TCTCTCTCCGCCGTCTCCGATCTCCACGAAACCAGATCACGTTTCAAACCTCCTCAGTTC 140
Query 115 tctcctctcttcttctcctctcttccCCAAAACGTCACAAAATCCCCTACTCGCTACTTC 174
||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||
Sbjct 141 TCTCCTCTCTTCTTCTCTTCTCCTCTCCAAAACGTCACAAAATCCCCTACTCGCTACTTC 200
Query 175 GAGGTTCAAAAACCTCCCGTTCCAAATCTCCCGACAGCTCAACAACCGTGTTCGTATCAA 234
|| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
Sbjct 201 GAAGTTCAAAAACCTCCCGTCCCAAATCTGCCGACAGCTCAACCACCGTGTTCGTATCGA 260
Query 235 ATCCTCCACCATGACTTTGGCTACACCTACGCTAAACCACCGGTTCTCTCCAATTACACA 294
|| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 261 ATTCTCCACCATGACTTTGGTTACACCTATGCTAAACCACCGGTTCTCTCCAATTACACT 320
Query 295 CTCCCCTCTCACTGCTCCTCTCGAGAATTCTCCAAAATCGTCCTCGAATTCAAATCCACC 354
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CTTCCCTCTCACTGCTCCTCTCGAGAATTCTCCAAAATCGTCCTCGAATTCAAATCCACT 380
Query 355 AGCCAAGGAAGACAATTCGATCGTATCTTCGGTGTTTGGCTTGACGGCGTTGAGATTCTC 414
||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 381 AGCCAAGGACGACAATTCGATCGTATATTCGGTGTTTGGCTTGACGGCGTTAAGATTCTC 440
Query 415 CGGAGCTGCACCGCCGAGCCTAGACCAAACGGAATTGTTTGGTCTGTCGAGAAAGATGTG 474
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 441 CGGAGCTGCACCGCCGAGCCTAGACCAAACGGAATTGTTTGGTCTGTTGAGAAAGATGTG 500
Query 475 ACCAAGTATCACTCTTTGCTCGTCAAAAACGAGACTCAGATTCTCTCTGTTTATCTTGGT 534
|| |||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||
Sbjct 501 ACTAAGTATCACTCTTTACTCGTCAAGAACGAGACTCAGCTTCTCTCTGTTTATCTTGGT 560
Query 535 AATCTTATCGATAAAACCTATACTGGTGTTTACCATGTTGATGTCATCTTCCATTTCTAT 594
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 561 AATCTTATTGATAAAACCTATACTGGTGTTTACCATGTTGATGTGATCTTCCATTTCTAT 620
Query 595 CAATCCGAAAGTAATCTTCAAGATGTTTCTGGTTATAGCTCTTCTAAAGCTGATATGATC 654
|||| ||| || |||||| ||||| |||||||||||||||| || |||||||||||||
Sbjct 621 CAATTCGATAGAAATCTTGAAGATCCTTCTGGTTATAGCTCTCCTCGAGCTGATATGATC 680
Query 655 CTGCCGATTTCGAGAAATCTTCCGTTGAACGATGGATTGTGGTTTGAAATTGTGAATTCG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 681 CTGCCGATTTCGAGAAATCTTCCGTTGAACGATGGATTGTGGTTTGAAATTGTGAATTCG 740
Query 715 AATGATACCAAGTATAAGGAGTTTGAGATTCCTAGGAATGTTTATAGAGCTGTGCTTGAG 774
|||||| | ||||||||||| ||||| |||||||||||||| ||||||||| | ||||||
Sbjct 741 AATGATTCTAAGTATAAGGAATTTGAAATTCCTAGGAATGTGTATAGAGCTATTCTTGAG 800
Query 775 GTTTATGTTTCTTTTCATGAGAATGATGAGTTTTGGTATGGAAATCTTCCTAATGACTAT 834
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 801 GTTTATGTTTCTTTCCATGAGAATGATGAGTTTTGGTATGGAAATCTTCCTAATGATT-T 859
Query 835 -GTTACTGCTAATAATCTTAGTGTTGCTGGTAATGGACCTTTTAGAGAAGTTGTGGTTAG 893
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 860 CGTTACTGCTAATAATCTCAGTGTTGCTGGTAACGGACCTTTTAGAGAAGTTGTGGTTAG 919
Query 894 TCTTGACGGTGATATTGCTGGTGCTGTTTGGCCTTTCCCTGTTGTTTTCACCGGTGGGAT 953
|||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 920 TCTTGACGGTGATATTGCTGGTGCGGTTTGGCCTTTCCCTGTTGTTTTCACTGGAGGGAT 979
Query 954 TAATCCTTTGCTTTGGAGACCAATTACTGCTATTGGCTCTTTTGATTTGCCGAGTTACGA 1013
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 980 CAATCCTTTGCTCTGGAGACCAATCACTGCTATTGGCTCTTTTGATTTGCCGAGTTATGA 1039
Query 1014 TATCGAGATCACGCCGTTCTTGGGAAGTTTGTTAGATGGGAAGACTCATAAGGTGGGGTT 1073
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1040 TATCGAGATCACACCGTTCTTGGGAAGTTTGTTGGATGGGAAGACTCATAAGGTGGGGTT 1099
Query 1074 TAGTGTTACAAATGCTTTGAATGTTTGGTATATTGATGCGAATTTGCATCTTTGGTTGGA 1133
|||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1100 TAGTGTAACAAATGCGTTGAATGTTTGGTATATCGATGCGAATTTGCATCTTTGGTTGGA 1159
Query 1134 TCAAGAGAAGGAGATTGTTGAAGGGAAGGTGTTGGATTTCAGTAGAAGCTCTCTGGAGAT 1193
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1160 TCAAGAGAAGGAGATAGTTGAAGGGAAGGTGTTGGAGTTCAGTAGAAGCTCTCTGGAGAT 1219
Query 1194 TAGCTCTGTCTCGGATTTTAAAGGCTTGAATGGAAACTTCACCACGAAAGCAAAGAGGTC 1253
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1220 TAGCTCTGTCTCGGATTTTAAAGGCTTGAATGGAAACTTCACTACGAAAGCAAAGAGGTC 1279
Query 1254 GATAACTTCGGTTGGGTTGGTTAAATCTTCTCATGGGGACATTATAACTAATGCTAATCA 1313
|||||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1280 GATAACTTCGATCGGGTTGGTTAAATCCTCTCATGGGGACATTATAACTAATGCCAATCA 1339
Query 1314 AGAATTTAGCTACGAGAA-CAAGATGGTTTTAGGTAAAGATGGGAACTTGCAGATCATAG 1372
|||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1340 AGAATTTAGCTACG-GAAACACGATGGTTTTAGGTAAAGATGGGAACTTGCAGATCATAG 1398
Query 1373 ATCAATTGATCCAAGCTGATGATCGTATTCATGCCAAGAGAGCCTCCAGAGAGATCTAC- 1431
|||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1399 ATCAGTTGATCCAAGCCGATGATCGTATTCACGCCAAGAGAGCCTCGAGAGAGATCTACT 1458
Query 1432 GCAGCGAAATCTATCAAGAGTTTTCCTTTTTACCTCGACTCTGACACTTTGGAGCAGCAG 1491
|| || ||||| |||||||| ||||| |||||||||||||||||| |||||||||| |||
Sbjct 1459 GC-GCAAAATCCATCAAGAGCTTTCCCTTTTACCTCGACTCTGACTCTTTGGAGCAACAG 1517
Query 1492 AATAACACATATCTGGCGGTAGCGAATGTCTCGATGGCATTCAACGAGGAGAGATCAGAG 1551
|||||||| | ||||| | | ||||||||| ||||||||||||||||||||||||||||
Sbjct 1518 AATAACACTTCTCTGGAGATTGCGAATGTCAAGATGGCATTCAACGAGGAGAGATCAGAG 1577
Query 1552 AGCGACAAAGGGTTGATGAGAACGTTTAAGAGCAAGCTTGAAAACAAGCAAGAAGGGCAA 1611
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1578 AGCGACAACGGGTTGATGAGAACATTCAAGAGCAAGCTTGAAAACAAGCAAGAAGGGCAA 1637
Query 1612 GGAGTAATGGTGGTGAAGAATAACTTAGTGGTCAGTGGATATGGAAGCACACAACAAGTG 1671
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1638 GGAGTGATGGTGGTGAAGAATAACTTAGTGGTCAATGGATATGGAAGCACACAACAAGTG 1697
Query 1672 TATAACTATGTTGGAAGTGACCAATGTTACTTCAGAAACATCAGTAGTTACAACTACACT 1731
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1698 TATAACTATGTTGGAAGTGACCAATGTTACTTCAGAAACATCAGTAGCTCCAACTACACT 1757
Query 1732 ATTCTCTATGACAAGGTTGAATCTGTTTGCAAGAAGAAAACACTGAAGCTGCCTCCACGG 1791
||||| ||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||
Sbjct 1758 ATTCTATATGACAAGCTTGAAAGTGTTTGCAAGAAAAAAACACTGAAGCTGCCGCCACGG 1817
Query 1792 CTCGAGCATTTACCAAGACAACACCCCTTACTTGCTTGATATATGACCAGA 1842
||||||||| ||||||||||||| |||||||| |||| |||||| ||||||
Sbjct 1818 CTCGAGCATCTACCAAGACAACAACCCTTACTGGCTTAATATATAACCAGA 1868
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75152053385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5