BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14930.1
Length=1662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478916 jgi|Araly1|478916|fgenesh2_kg.3__1617__AT3G14930.1 2490 0.0
> Ahg478916 jgi|Araly1|478916|fgenesh2_kg.3__1617__AT3G14930.1
Length=1587
Score = 2490 bits (1348), Expect = 0.0
Identities = 1513/1593 (95%), Gaps = 9/1593 (1%)
Strand=Plus/Plus
Query 73 TCTTCAAACTCTTGGGTTCTTCTCTGATTGAAAATGAGCTTATCATCGCCAACCAGTGCT 132
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1 TCTTCAAACTCTTAGGTTCTTCTCTAATTGAAAATGAGCTTATCATCGCCAACCAGTACT 60
Query 133 TGTAGCTCGTCCAGATGTTACTCCTCGGGATTATCGTTTCCGATTGGATTTGGATCGAAT 192
||||||||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 61 TGTAGCTCGTCGAGATGTTACTCCTCGGGATTGTCGTTGCCGATTGGATTTCGATCGAAT 120
Query 193 CCCATCAATGTGGGATTGGTTTGTTACCCAAAAAGATACAGTATTGCTGCTCGGAAGTTC 252
||||| ||||| |||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 121 CCCATTAATGTTGGATTGGTTTGTTACCCAAAAAGACACAATATTGCTGCTCGGAAGTTC 180
Query 253 GTAGTGGCTTGCTCCTCCTCCTCTTCCGATCCACTTTTGGTTAAGGCTGCAAAAGGGCAA 312
|| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 181 GTCGTGGCTTGCTCCTCCTCCTCTTCTGATCCACTTTTGGTTAAGGCTGCGAAAGGGCAA 240
Query 313 GCCATAAGTCGTCCTCCAGCTTGGATGATGAGGCAAGCAGGAAGGTATATGGCTGTTTAC 372
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCCGTGAGTCGTCCTCCAGCTTGGATGATGAGGCAAGCAGGAAGGTATATGGCTGTTTAC 300
Query 373 CAAAAGCTCGCCAAGAAACATCCGTCCTTCAGAGAGAGATCAGAGAACACTGATCTAATA 432
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 301 CAAAAGCTCGCCAAGAAACACCCGTCCTTCAGAGAGAGGTCAGAGAACACTGATCTAATA 360
Query 433 GTGGAAATCTCTTTGCAGCCTTGGCAAGCATTCAGACCAGACGGTGTCATCATTTTCTCT 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTGGAAATCTCTTTGCAGCCTTGGCAAGCATTCAGACCAGACGGTGTCATCATTTTCTCT 420
Query 493 GACATCCTCACCCCTTTACCTGCATTCGGTGTCCCTTTTGATATTGAAGAGGTAAAAGGT 552
||||||||||| |||||||| || || |||||||||||||| ||||||||||| |||||
Sbjct 421 GACATCCTCACGCCTTTACCCGCGTTTGGTGTCCCTTTTGACATTGAAGAGGTGAAAGGC 480
Query 553 CCTGTAATCCAATCTCCTATCCGAACTGAAGAAGATATGAAGAGATTACATCCCATTGAT 612
||||| ||||||||||| |||||||||||||||||| | || ||||| ||| ||||||||
Sbjct 481 CCTGTGATCCAATCTCCCATCCGAACTGAAGAAGATTTAAAAAGATTGCATGCCATTGAT 540
Query 613 TTCGAGAAACTACAGTTTGTTGGAGATTCTCTCAAGATTTTGAGACGAGAGGTTGGGGAA 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCGAGAAACTACAGTTTGTTGGAGATTCTCTCAAGATTTTGAGACGAGAGGTTGGGGAA 600
Query 673 CATGCTGCGGTGTTGGGTTTCGTTGGAGCGCCTTGGACAATTGCAACATATATTGTTGAA 732
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATGCTGCGGTATTGGGTTTCGTTGGAGCGCCTTGGACAATTGCAACATATATTGTTGAA 660
Query 733 GGAGGAACAACTCGAACATATACAGTCATAAAGAATATGTGCCACACTGCACCAGATGTA 792
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 GGGGGAACAACTCGGACATATACAGTCATAAAGAATATGTGCCACACTGCACCAAATGTA 720
Query 793 TTGAGAGCTCTATTATCTCATTTAACCAAGGCCATTACCGAGTATGTGGTTTACCAAGTT 852
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 721 TTGAGAGCTCTATTATCTCATTTAACCAAGGCCATTACCGAGTATGTTGTTTACCAAGTT 780
Query 853 GAGCACGGAGCTCACTGCATACAAATATTCGATTCCTGGGGTGGCCAACTGACTCCGGAG 912
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 781 GAGCATGGAGCTCACTGCATACAAATATTCGATTCATGGGGTGGCCAACTGACTCCTGAG 840
Query 913 ATGTGGGAGCGCTGGTCCAAACCATACATTGAAGAGATCATACATGCTGTAAAGAAAAGA 972
|||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct 841 ATGTGGGAGCGCTGGTCCAAGCCCTACATCGAAGAGATCATTCATGCTGTAAAGAAAAGA 900
Query 973 TGTCCAGATACGCCGATAGTTTTCTACATCAATGGAAATGGTGGCCTTCTTGAGCGAATG 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGTCCAGATACGCCGATAGTTTTCTACATCAATGGAAATGGTGGCCTTCTTGAGCGAATG 960
Query 1033 AAAGGAACTGGAGCTGATGTTATTGGACTTGACTGGACTGTAGATATGGCTGATGGAAGG 1092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 AAAGGAACTGGAGCTGATGTTATTGGACTTGACTGGACTGTAGATATGGCTGATGGAAGG 1020
Query 1093 AGGCGATTGGGAAGCGAGGTAAGTGTGCAGGGAAATGTTGATCCAGCTTACCTATTCTCT 1152
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 1021 AGGCGATTGGGAAGCGAGGTTAGTGTGCAGGGAAATGTTGATCCAGCCTACCTATTCTCT 1080
Query 1153 CCGCTTCCTGCTTTGACCGAAGAAATTGAAAGAGTTGTGAAGTGTGCTGGACCAAAAGGG 1212
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 CCGCTTCCTGCTTTAACCGAAGAAATTGAGAGAGTTGTGAAGTGTGCTGGACCAAAAGGG 1140
Query 1213 CATATTCTCAATCTAGGACACGGTGTCTTGGTAGGGACACCAGAGGAAGCCGTGGCTCAT 1272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CATATTCTCAATCTAGGACACGGTGTCTTGGTAGGGACACCAGAGGAAGCCGTGGCTCAT 1200
Query 1273 TTCTTTGAAACCGCTAGAAACTTGGATTACCAAACACTTTTCCAAAATCATGTTCCTGCA 1332
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1201 TTCTTTGAAACCGCTAGAAACATGGATTACCAAACACTTTTCCAAAATCATGTTCCTGCA 1260
Query 1333 GAAAAAGCTGAACCTGAATTGGTTGTCTGAGAAATGGAATGAGAGAAAAAGTTCCATGTC 1392
|||||||||||| |||||||||||| |||||||||||||| |||||||| ||||||||||
Sbjct 1261 GAAAAAGCTGAATCTGAATTGGTTGCCTGAGAAATGGAATCAGAGAAAA-GTTCCATGTC 1319
Query 1393 TGACCCTTAATCGATGCTAGAGTTGGTAACTTGCTATGAGATATATGCGAAGCTGTCCAG 1452
|||||| |||||||||| ||| ||||| ||||||||||||||| || |||||||||||||
Sbjct 1320 TGACCCATAATCGATGCGAGATTTGGTTACTTGCTATGAGATACATTCGAAGCTGTCCAG 1379
Query 1453 TTTTTGTTTGGCTTGCTTGAGGATTTCCAATCTTCTGGACCAAGCTCTGCTTAACGT-TT 1511
|||||||||||||||| || |||||||||||||||||||||||||| | |||||| | ||
Sbjct 1380 TTTTTGTTTGGCTTGCCTGTGGATTTCCAATCTTCTGGACCAAGCTGTACTTAAC-TCTT 1438
Query 1512 AACAATGTATTGAGTTGCTCCTAGGCTTCAAATGTTGCTGCTTCTTTTGGAGATATGACT 1571
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1439 AACAATGTATTGAGTTGCTCATAGGCTTCAAATGCTGCTGCTTCTTTTGGAGATATGACT 1498
Query 1572 CTGGTTAAAGTTT-AACCAAACATTCATTTATCTGGTTAATCTCAAACCTTTGCTATGTT 1630
||||||||| ||| || ||||||| | ||||||||||||||||||||||||| ||||
Sbjct 1499 CTGGTTAAAATTTTAAATAAACATT-A---ATCTGGTTAATCTCAAACCTTTGCTCTGTT 1554
Query 1631 TGTTATCCCACT-TTTTTCATATGGTTCTTTCT 1662
| |||||||| | ||||||||||||||| ||||
Sbjct 1555 TCTTATCCCATTATTTTTCATATGGTTCGTTCT 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62315640820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5