BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14950.1 Length=2166 Score E Sequences producing significant alignments: (Bits) Value Ahg478918 jgi|Araly1|478918|fgenesh2_kg.3__1619__AT3G14950.1 3203 0.0 > Ahg478918 jgi|Araly1|478918|fgenesh2_kg.3__1619__AT3G14950.1 Length=2148 Score = 3203 bits (1734), Expect = 0.0 Identities = 2029/2170 (94%), Gaps = 26/2170 (1%) Strand=Plus/Plus Query 1 ATGTCGAAGCTCAAGAAACCTATACTAGAATCTAACTGTGTCGCCGATAAGCTCTGTGAC 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCGAAGCTCAAGAAACCTATACTAGAATCTAACTGTGTCGCCGATAAGCTCTGTGAC 60 Query 61 TCGTTGAATATGGAAGATAATAACAATGATAAACCAGATACTATTAATGTCGATCTTGGA 120 || |||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| Sbjct 61 TCATTGAATATGGAAGACAAT---AATAATAAACCAGATACTATTAATGTCGATCTTGGA 117 Query 121 TCACCAATTACACCGCTTCAGACTCAGCCGAGTGGACTCTCTTCTTCCACCAGTAGTTTC 180 ||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| | Sbjct 118 TCACCAATTACACCGCTTCAGACTCGGCCGAGTGGA--CTC-ACTTCCACCAGTAGTTGC 174 Query 181 AGTTCTAGCTCTTCTGGATCGGTCACAGGTCATGCCGGACATACTCCCCCGGTTACAAGA 240 ||||||||||| ||||||||||| |||||||||||||||||| || |||||||||| | Sbjct 175 AGTTCTAGCTCGTCTGGATCGGTTACAGGTCATGCCGGACATGCT---CCGGTTACAAAA 231 Query 241 AAACCAGATTCCGTTCAGCCCGTTCCCTCCGCCTCTAAGTCTAAATCTAGCAAT-CTCTC 299 ||||| ||||||| ||||||| ||||||||||| |||||| ||||||||||| | || || Sbjct 232 AAACCCGATTCCGATCAGCCCCTTCCCTCCGCCGCTAAGTATAAATCTAGCACTCCT-TC 290 Query 300 TTCCGCCGCGAAATCTTCAAAGTCTAGTACTACTCCCTCCTCCGCCGCTCAATTTGGTGG 359 |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| Sbjct 291 CTCCGCCGCTAAATCTTCAAAGTCTAGTACTACT--C-CCTCCGCCGCTCAATTTGGTGG 347 Query 360 GTCATA-TAGTCCTGCCCGTGCTCAATCACGTGCAAGCAGTCAAGTTGGTGCTAAAACCG 418 ||| || |||||||||| | |||| ||| ||| |||||||||||||||||||||||||| Sbjct 348 GTC-TAGTAGTCCTGCCAGCGCTCGATCTCGTTCAAGCAGTCAAGTTGGTGCTAAAACC- 405 Query 419 GGAATATAATAAGACCATCATCAAACTCAGCTTCGGTTACGACAAAACCATCTGGTAATA 478 || | || || || |||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 406 GGTA-AT-ATGAGCCCATTATCAAACTCTGCTTCGGTTACGACAAAACCATCTGGTAATA 463 Query 479 AAAGCTCTGTTTCGTCGAAAC-AGAGCCTCAAAATACTTCCCGCCGGGAACCTTGTCCCA 537 ||||||||||||||||||||| | | || ||||| ||||||||||||||||| ||||| Sbjct 464 AAAGCTCTGTTTCGTCGAAACAACA-TGTCCAAATAGTTCCCGCCGGGAACCTTTTCCCA 522 Query 538 TCGGGGAAGGTACAGATTACAGGCATGACTCAAGAAAAACCAAGAAGCATGGTTCTTGGA 597 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 TCGGGGAAGGTACAAATTACAGGCATGACTCAAGAAAAACCAAGAAGCATGGTTCTTGGA 582 Query 598 CCAGGTGCTAAATCATACGGTTACGGTAGCATTATACGAGGAAACAACTTATCTCCGGTG 657 ||||| ||||||||||||||||| ||||| || || |||| ||||||||||||||||| | Sbjct 583 CCAGGGGCTAAATCATACGGTTATGGTAGTATAATGCGAGCAAACAACTTATCTCCGGCG 642 Query 658 AAGCCAACGATGATGTCTGATTCTTCCTCTGTTTTGCCTTTAACTCTCAGTAATAACTCT 717 |||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 643 AAGCCAAC---GATGTCCGAGTCTTCCTCTGTTTTGCCTTTAACTCTCAGTAATAACTCT 699 Query 718 ACCGGTGGTCCTGATGCATATACATCGTGGAAGATAGCTATATATGGTTCTAATCCTGAA 777 | |||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 700 AGCGGTGGTCCTGACACATATACATCGTGGAAGATAGCTATATATGGTTCAAATCCAGAA 759 Query 778 GAAGTAAAGAGGTTTGGTAACGAAATGTTCAGGAAAGGTTGTTTCGCTGAGGCTTTGAAG 837 ||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 760 GAAGTAAAGAGATTTGGTAACGAAATGTTCAAGAAAGGTTGTTTTACTGAGGCTTTGAAG 819 Query 838 TTGTATGATCGAGCAATAGAGCTATCACCGAGTAATGCTACTTACCATAGCAACCGTGCA 897 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | ||| Sbjct 820 TTGTATGATCGAGCAATTGAGCTTTCACCGAGTAATGCTACTTACCATAGCAATAGAGCA 879 Query 898 GCTGCATTGTCGAGTTTGGGTCAGATTGGTGAAGCTGTGAATGAATGTGAAATAGCTATC 957 |||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||| Sbjct 880 GCTGCATTATCAAGTTTGGGACAGATTGGTGAAGCTGTGAATGAATGTGAAATGGCTATC 939 Query 958 AAATTAGATCCAAACTTTGCAAGGGCTCATCACCGTTTAGCCTCATTGCTTCTTAGATTA 1017 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 940 AAATTAGATCCAAAATTTGCAAGGGCTCATCACCGTTTAGCCTCATTGCTTCTTAGATTA 999 Query 1018 GGTTATGTGGATAATGCAGGGATACATTTATATTCAGTGGAGGAACCATTAGATCCAACG 1077 ||||||||||||||||||||||||||||| |||||||||||||||||| |||||| || Sbjct 1000 GGTTATGTGGATAATGCAGGGATACATTTTTATTCAGTGGAGGAACCAGCAGATCCCACT 1059 Query 1078 GTGGTGAAGATGCTTCAACAAGTAGATAAACACTTGAACAAATGCACATATGCAAGAAGA 1137 | || || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1060 CTAGTTAAAATGCTTCAACAAGTAGATAAACACTTGAACAAATGCACATATGCAAGAAGA 1119 Query 1138 CGCGGTGAATGGAGTATTGTTTTGACTGAAGTAAGTGCAGCCATTGCGTCTGGAGCTGAT 1197 ||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1120 CGCGGTGAATGGAATATTGTTTTGACAGAAGTAAGTGCAGCCATTGCCTCTGGAGCTGAC 1179 Query 1198 TCTTCTCCTCAGCTAGCTATGTGTAAAGCTGAAGCACTACTGAAACTTCTTCGGCTTGAT 1257 |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 1180 TCTTCTCCTCAGCTAGCTATGTGTAAAGTTGAAGCACTACTGAAACTTCTACGGCTTGAT 1239 Query 1258 GATGCTCAAAGAGTACTAGAATGTGTCCCCAAAGTGGAACCATTCCCAGCTTCTTTCTCA 1317 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1240 GATGCTCAAAGAGTACTAGAATGTGTCCCCAAAGTAGAACCATTCCCAGCTTCTTTCTCA 1299 Query 1318 CATACTCGGTTTTTCGATATGATCGCTGAAGCTTACACATCTTTTGTCAAATCCCAAATG 1377 ||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 1300 CATACTCGGGTTTTCGATATGAACTCTGAAGCTTACACATCTTTTGTCAAATCCCAAATG 1359 Query 1378 GAGTTGGCTCTAGGAAGGTTTGAAAATGCAGTTGTAACTGCAGAGAAAGCTTCAAAGATT 1437 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 1360 GAGTTGGCTCTAGGAAGGTTTGAAAATGCAGTTACAACTGCAGAGAAAGCTTCAGAGATT 1419 Query 1438 GATCCACAAAACAATGAAGTTGAAATTTTGTATAAAAATGTTAGATTAATAACTAGAGCG 1497 |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 1420 GATCCAAAAAACAATGAAGTTGAAATTTTGTATAAAAATGTTAGATTAATTACTAGGGCG 1479 Query 1498 CGTGATCGTGGTAACGATCTTTATGAACTAGAAAGATACACTGAAGCAAGATCAGCTTAT 1557 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 1480 CGTGATCGTGGTAACGATCTTTATGAATTAGAAAGATACACTGAAGCGAGATCAGCTTAT 1539 Query 1558 GCAGAAGGCCTTAAGTATGATCCATCCAATGCTACTCTGTTATGTTACAGAGCAGATTGT 1617 || |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1540 GCGGAAGGCCTTAAGTATGATCCATCCAATGCTACTCTGTTATGTCATAGAGCAGATTGT 1599 Query 1618 TTCTTTAAGGTT-GGAATGTGGGAGAGCTCAATAGAAGATTGTAACCATGCATTGCTTAT 1676 |||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||| || Sbjct 1600 TTCTTTAAAGTTTGGA-TGTGGGAGAGCTCAATAGAAGATTGTAACCATGCGTTGCTCAT 1658 Query 1677 ACTACCGAGTTACACAAAGCCTCGTCTTCAAAGAGCTGCTTTATATACCAAGTTGGAAAG 1736 |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 1659 TCTACCGAGTTACACAAAGCCTCGTCTTCAAAGAGCTGCTTCATATAGCAAGTTGGAAAG 1718 Query 1737 ATGGGCTGAAGCAGTGAGTGATTATGAGATCTTAAGAAAGGAACTGCCTTATGACAAGGA 1796 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1719 ATGGGCTGAAGCAGTGAGCGATTACGAGATCTTAAGAAAGGAACTGCCTTATGACAAGGA 1778 Query 1797 AATTGCTGAATCTTTATTTCATGCTCAAGTTGCATTAAAGAAATCTCGCGGCGAAGTAGT 1856 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1779 AATTGCTGAATCTTTATTTCATGCTCAAGTTGCATTGAAGAAATCTCGCGGCGAAGTAGT 1838 Query 1857 TCTAAACATGGAATTTGGAGGTGAAGTTGAGGAAATATCTAGTCTTGAAGAGTTAAAAGC 1916 ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1839 TCTAAACATGGAATTTGGAAGTGAAGTTGAGGAAATTTCTAGTCTTGAAGAGTTAAAAGC 1898 Query 1917 TGCATTAACTCGTCCTGCTTCTGATCCACAATGCAAGGAGATATCCACTTTCGTGGACGC 1976 ||||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||| Sbjct 1899 TGCATTAACTCGTCCTGGTTCTGATCCACAATGCAAGGAGATGTCTACTTTCATGGACGC 1958 Query 1977 ACTATGTGTTCGTTACCCATCTTTGCATTTCCTCAAGGTGGAGATTGTAAAATGTCCAGA 2036 |||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| Sbjct 1959 ACTATGTGTTGGTTACCCATCTTTGCATTTCCTTAAGGTGGAGATTGGAAAATGTCCAGA 2018 Query 2037 AGTGGGTAATGCAGAAAGAGTGAGAGTTGTGCCAACATTTAAGATATACAAACTTGGGAT 2096 ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||| Sbjct 2019 AGTGGGTAATGCAGAGAGAGTGAGAGTTGTACCAACATTCAAGATATACAAACTTGGGAT 2078 Query 2097 TCGGATGAAAGAGATTGTGTGTCCAAGCAAGGAAGCGCTGGAGAAAACAGTGAGGCACTA 2156 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2079 TCGGATGAAAGAGATTGTGTGTCCAAGCAAGGAAGCACTGGAGAAAACAGTGAGGCACTA 2138 Query 2157 TGGCCTTTAG 2166 |||||||||| Sbjct 2139 TGGCCTTTAG 2148 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81513124300 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5