BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14950.1
Length=2166
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478918 jgi|Araly1|478918|fgenesh2_kg.3__1619__AT3G14950.1 3203 0.0
> Ahg478918 jgi|Araly1|478918|fgenesh2_kg.3__1619__AT3G14950.1
Length=2148
Score = 3203 bits (1734), Expect = 0.0
Identities = 2029/2170 (94%), Gaps = 26/2170 (1%)
Strand=Plus/Plus
Query 1 ATGTCGAAGCTCAAGAAACCTATACTAGAATCTAACTGTGTCGCCGATAAGCTCTGTGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGAAGCTCAAGAAACCTATACTAGAATCTAACTGTGTCGCCGATAAGCTCTGTGAC 60
Query 61 TCGTTGAATATGGAAGATAATAACAATGATAAACCAGATACTATTAATGTCGATCTTGGA 120
|| |||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 61 TCATTGAATATGGAAGACAAT---AATAATAAACCAGATACTATTAATGTCGATCTTGGA 117
Query 121 TCACCAATTACACCGCTTCAGACTCAGCCGAGTGGACTCTCTTCTTCCACCAGTAGTTTC 180
||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||| |
Sbjct 118 TCACCAATTACACCGCTTCAGACTCGGCCGAGTGGA--CTC-ACTTCCACCAGTAGTTGC 174
Query 181 AGTTCTAGCTCTTCTGGATCGGTCACAGGTCATGCCGGACATACTCCCCCGGTTACAAGA 240
||||||||||| ||||||||||| |||||||||||||||||| || |||||||||| |
Sbjct 175 AGTTCTAGCTCGTCTGGATCGGTTACAGGTCATGCCGGACATGCT---CCGGTTACAAAA 231
Query 241 AAACCAGATTCCGTTCAGCCCGTTCCCTCCGCCTCTAAGTCTAAATCTAGCAAT-CTCTC 299
||||| ||||||| ||||||| ||||||||||| |||||| ||||||||||| | || ||
Sbjct 232 AAACCCGATTCCGATCAGCCCCTTCCCTCCGCCGCTAAGTATAAATCTAGCACTCCT-TC 290
Query 300 TTCCGCCGCGAAATCTTCAAAGTCTAGTACTACTCCCTCCTCCGCCGCTCAATTTGGTGG 359
|||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 291 CTCCGCCGCTAAATCTTCAAAGTCTAGTACTACT--C-CCTCCGCCGCTCAATTTGGTGG 347
Query 360 GTCATA-TAGTCCTGCCCGTGCTCAATCACGTGCAAGCAGTCAAGTTGGTGCTAAAACCG 418
||| || |||||||||| | |||| ||| ||| ||||||||||||||||||||||||||
Sbjct 348 GTC-TAGTAGTCCTGCCAGCGCTCGATCTCGTTCAAGCAGTCAAGTTGGTGCTAAAACC- 405
Query 419 GGAATATAATAAGACCATCATCAAACTCAGCTTCGGTTACGACAAAACCATCTGGTAATA 478
|| | || || || |||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 406 GGTA-AT-ATGAGCCCATTATCAAACTCTGCTTCGGTTACGACAAAACCATCTGGTAATA 463
Query 479 AAAGCTCTGTTTCGTCGAAAC-AGAGCCTCAAAATACTTCCCGCCGGGAACCTTGTCCCA 537
||||||||||||||||||||| | | || ||||| ||||||||||||||||| |||||
Sbjct 464 AAAGCTCTGTTTCGTCGAAACAACA-TGTCCAAATAGTTCCCGCCGGGAACCTTTTCCCA 522
Query 538 TCGGGGAAGGTACAGATTACAGGCATGACTCAAGAAAAACCAAGAAGCATGGTTCTTGGA 597
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 TCGGGGAAGGTACAAATTACAGGCATGACTCAAGAAAAACCAAGAAGCATGGTTCTTGGA 582
Query 598 CCAGGTGCTAAATCATACGGTTACGGTAGCATTATACGAGGAAACAACTTATCTCCGGTG 657
||||| ||||||||||||||||| ||||| || || |||| ||||||||||||||||| |
Sbjct 583 CCAGGGGCTAAATCATACGGTTATGGTAGTATAATGCGAGCAAACAACTTATCTCCGGCG 642
Query 658 AAGCCAACGATGATGTCTGATTCTTCCTCTGTTTTGCCTTTAACTCTCAGTAATAACTCT 717
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 643 AAGCCAAC---GATGTCCGAGTCTTCCTCTGTTTTGCCTTTAACTCTCAGTAATAACTCT 699
Query 718 ACCGGTGGTCCTGATGCATATACATCGTGGAAGATAGCTATATATGGTTCTAATCCTGAA 777
| |||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 700 AGCGGTGGTCCTGACACATATACATCGTGGAAGATAGCTATATATGGTTCAAATCCAGAA 759
Query 778 GAAGTAAAGAGGTTTGGTAACGAAATGTTCAGGAAAGGTTGTTTCGCTGAGGCTTTGAAG 837
||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 760 GAAGTAAAGAGATTTGGTAACGAAATGTTCAAGAAAGGTTGTTTTACTGAGGCTTTGAAG 819
Query 838 TTGTATGATCGAGCAATAGAGCTATCACCGAGTAATGCTACTTACCATAGCAACCGTGCA 897
||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||
Sbjct 820 TTGTATGATCGAGCAATTGAGCTTTCACCGAGTAATGCTACTTACCATAGCAATAGAGCA 879
Query 898 GCTGCATTGTCGAGTTTGGGTCAGATTGGTGAAGCTGTGAATGAATGTGAAATAGCTATC 957
|||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 880 GCTGCATTATCAAGTTTGGGACAGATTGGTGAAGCTGTGAATGAATGTGAAATGGCTATC 939
Query 958 AAATTAGATCCAAACTTTGCAAGGGCTCATCACCGTTTAGCCTCATTGCTTCTTAGATTA 1017
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AAATTAGATCCAAAATTTGCAAGGGCTCATCACCGTTTAGCCTCATTGCTTCTTAGATTA 999
Query 1018 GGTTATGTGGATAATGCAGGGATACATTTATATTCAGTGGAGGAACCATTAGATCCAACG 1077
||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||
Sbjct 1000 GGTTATGTGGATAATGCAGGGATACATTTTTATTCAGTGGAGGAACCAGCAGATCCCACT 1059
Query 1078 GTGGTGAAGATGCTTCAACAAGTAGATAAACACTTGAACAAATGCACATATGCAAGAAGA 1137
| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 CTAGTTAAAATGCTTCAACAAGTAGATAAACACTTGAACAAATGCACATATGCAAGAAGA 1119
Query 1138 CGCGGTGAATGGAGTATTGTTTTGACTGAAGTAAGTGCAGCCATTGCGTCTGGAGCTGAT 1197
||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1120 CGCGGTGAATGGAATATTGTTTTGACAGAAGTAAGTGCAGCCATTGCCTCTGGAGCTGAC 1179
Query 1198 TCTTCTCCTCAGCTAGCTATGTGTAAAGCTGAAGCACTACTGAAACTTCTTCGGCTTGAT 1257
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1180 TCTTCTCCTCAGCTAGCTATGTGTAAAGTTGAAGCACTACTGAAACTTCTACGGCTTGAT 1239
Query 1258 GATGCTCAAAGAGTACTAGAATGTGTCCCCAAAGTGGAACCATTCCCAGCTTCTTTCTCA 1317
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1240 GATGCTCAAAGAGTACTAGAATGTGTCCCCAAAGTAGAACCATTCCCAGCTTCTTTCTCA 1299
Query 1318 CATACTCGGTTTTTCGATATGATCGCTGAAGCTTACACATCTTTTGTCAAATCCCAAATG 1377
||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1300 CATACTCGGGTTTTCGATATGAACTCTGAAGCTTACACATCTTTTGTCAAATCCCAAATG 1359
Query 1378 GAGTTGGCTCTAGGAAGGTTTGAAAATGCAGTTGTAACTGCAGAGAAAGCTTCAAAGATT 1437
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1360 GAGTTGGCTCTAGGAAGGTTTGAAAATGCAGTTACAACTGCAGAGAAAGCTTCAGAGATT 1419
Query 1438 GATCCACAAAACAATGAAGTTGAAATTTTGTATAAAAATGTTAGATTAATAACTAGAGCG 1497
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1420 GATCCAAAAAACAATGAAGTTGAAATTTTGTATAAAAATGTTAGATTAATTACTAGGGCG 1479
Query 1498 CGTGATCGTGGTAACGATCTTTATGAACTAGAAAGATACACTGAAGCAAGATCAGCTTAT 1557
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 1480 CGTGATCGTGGTAACGATCTTTATGAATTAGAAAGATACACTGAAGCGAGATCAGCTTAT 1539
Query 1558 GCAGAAGGCCTTAAGTATGATCCATCCAATGCTACTCTGTTATGTTACAGAGCAGATTGT 1617
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1540 GCGGAAGGCCTTAAGTATGATCCATCCAATGCTACTCTGTTATGTCATAGAGCAGATTGT 1599
Query 1618 TTCTTTAAGGTT-GGAATGTGGGAGAGCTCAATAGAAGATTGTAACCATGCATTGCTTAT 1676
|||||||| ||| ||| |||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1600 TTCTTTAAAGTTTGGA-TGTGGGAGAGCTCAATAGAAGATTGTAACCATGCGTTGCTCAT 1658
Query 1677 ACTACCGAGTTACACAAAGCCTCGTCTTCAAAGAGCTGCTTTATATACCAAGTTGGAAAG 1736
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 1659 TCTACCGAGTTACACAAAGCCTCGTCTTCAAAGAGCTGCTTCATATAGCAAGTTGGAAAG 1718
Query 1737 ATGGGCTGAAGCAGTGAGTGATTATGAGATCTTAAGAAAGGAACTGCCTTATGACAAGGA 1796
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1719 ATGGGCTGAAGCAGTGAGCGATTACGAGATCTTAAGAAAGGAACTGCCTTATGACAAGGA 1778
Query 1797 AATTGCTGAATCTTTATTTCATGCTCAAGTTGCATTAAAGAAATCTCGCGGCGAAGTAGT 1856
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1779 AATTGCTGAATCTTTATTTCATGCTCAAGTTGCATTGAAGAAATCTCGCGGCGAAGTAGT 1838
Query 1857 TCTAAACATGGAATTTGGAGGTGAAGTTGAGGAAATATCTAGTCTTGAAGAGTTAAAAGC 1916
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1839 TCTAAACATGGAATTTGGAAGTGAAGTTGAGGAAATTTCTAGTCTTGAAGAGTTAAAAGC 1898
Query 1917 TGCATTAACTCGTCCTGCTTCTGATCCACAATGCAAGGAGATATCCACTTTCGTGGACGC 1976
||||||||||||||||| |||||||||||||||||||||||| || |||||| |||||||
Sbjct 1899 TGCATTAACTCGTCCTGGTTCTGATCCACAATGCAAGGAGATGTCTACTTTCATGGACGC 1958
Query 1977 ACTATGTGTTCGTTACCCATCTTTGCATTTCCTCAAGGTGGAGATTGTAAAATGTCCAGA 2036
|||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1959 ACTATGTGTTGGTTACCCATCTTTGCATTTCCTTAAGGTGGAGATTGGAAAATGTCCAGA 2018
Query 2037 AGTGGGTAATGCAGAAAGAGTGAGAGTTGTGCCAACATTTAAGATATACAAACTTGGGAT 2096
||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 2019 AGTGGGTAATGCAGAGAGAGTGAGAGTTGTACCAACATTCAAGATATACAAACTTGGGAT 2078
Query 2097 TCGGATGAAAGAGATTGTGTGTCCAAGCAAGGAAGCGCTGGAGAAAACAGTGAGGCACTA 2156
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2079 TCGGATGAAAGAGATTGTGTGTCCAAGCAAGGAAGCACTGGAGAAAACAGTGAGGCACTA 2138
Query 2157 TGGCCTTTAG 2166
||||||||||
Sbjct 2139 TGGCCTTTAG 2148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81513124300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5