BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G14960.1 Length=1444 Score E Sequences producing significant alignments: (Bits) Value Ahg929279 jgi|Araly1|929279|scaffold_301736.1 1650 0.0 Ahg474455 jgi|Araly1|474455|fgenesh2_kg.1__4409__AT1G53290.1 917 0.0 > Ahg929279 jgi|Araly1|929279|scaffold_301736.1 Length=1074 Score = 1650 bits (893), Expect = 0.0 Identities = 1006/1061 (95%), Gaps = 6/1061 (1%) Strand=Plus/Plus Query 38 GATCCG-TCGTT-ACAAAATCATGTCATCTTCTCCCAAGCTGTTTCACGCGCGTCCATCA 95 |||||| ||||| ||||||||||| |||||||||| ||||||||| ||||||| |||||| Sbjct 1 GATCCGTTCGTTAACAAAATCATGCCATCTTCTCCTAAGCTGTTTAACGCGCGGCCATCA 60 Query 96 TTCTTCACGCGCCGATCGACGCCTTTGATCGTCTTCACCTCTCTCGCTATCGGTCTAACC 155 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 61 CTCTTCACGCGCCGATCGACGCCTTTGATCGTCTTCACCTCTCTTGCTATCGGTCTAACC 120 Query 156 GGTTTCCTTTTCGGATTATCAACGATCCTTTTCCCTGGTCTCCGGTTATCTGGCCGGTCC 215 |||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| || Sbjct 121 GGTTTCCTTTTCGGATTATCCACGATTCTTTTCCCGGGTCTCCGGTTATCCGGCCGGACC 180 Query 216 TGCCTCACCAACTTGCCACCGAAGACTGTTAAAATCGTCTGGGACGTCGCTGGTAATAGT 275 ||||||||||||||||| |||||||| |||||||||| ||||||||||||||| |||||| Sbjct 181 TGCCTCACCAACTTGCCTCCGAAGACGGTTAAAATCGCCTGGGACGTCGCTGGAAATAGT 240 Query 276 ATCGTTAATGGCGAAGTCAAGAGGCACAAAGTGATGGGATTCGTCGGAATCCAGACCGGA 335 |||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 241 ATCGTTAACGGCGAAGTCAAAAGGCACAAGGTTATGGGATTCGTCGGAATCCAGACCGGA 300 Query 336 TTCAGATCTGCTGGCCGGAGACGAGCTCTCAGGAACACATGGATGCCGTCCGATCCCGAA 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TTCAGATCTGCTGGCCGGAGACGAGCTCTCAGGAACACATGGATGCCGTCCGATCCCGAA 360 Query 396 GGCCTTCGAAGATTGGAAGAATCAACAGGATTAGCCATTAGATTTATTATAGGCAAAACC 455 ||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 361 GGCCTTCGACGATTGGAGGAATCAACAGGATTGGCCATTAGATTTATTATAGGCAAAACC 420 Query 456 AAAGACGAGGCCAAAATGGTTGAGCTGAGAAGCGAAGTTGCA-ATGTACGATGACTTTAT 514 ||||| ||||||||||||| |||||| ||||| ||| | ||| | ||||||||||||||| Sbjct 421 AAAGATGAGGCCAAAATGGCTGAGCTTAGAAGGGAAATCGCAGA-GTACGATGACTTTAT 479 Query 515 ACTGCTCGATATCGAGGAGGAGTACAGTAAGCTCCCCTACAAAACTTTGGCTTTCTTCAA 574 |||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 480 ACTGCTAGATCTCGAGGAGGAGTATAGTAAGCTCCCCTACAAAACTTTGGCTTTCTTCAA 539 Query 575 AGCTGCATATGCAC-TATATGATTCAGAATTCTATGTCAAAGCTGATGATGATATATACT 633 ||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGCTGCATACGC-CTTATATGATTCAGAATTCTATGTCAAAGCTGATGATGATATATACT 598 Query 634 TGAGGCCAGATCGTTTGTCTTTACTGTTGGCTAAAGAGCGGGGTCACTCGCAGACATACC 693 ||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |||| Sbjct 599 TGAGGCCAGATCGGTTGTCTTTGCTGTTGGCTAAAGAGCGGACTCACTCGCAGACGTACC 658 Query 694 TTGGATGCATGAAAAAAGGTCCGGTTTTCACAGATCCAAAGCTTAAATGGTATGAACCTT 753 | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 659 TCGGATGCCTGAAAAAAGGTCCGGTTTTCACAGATCCAAAGCTCAAATGGTATGAACCTT 718 Query 754 TGGCAGATCTGCTCGGGAAAGAGTACTTTCTTCATGCTTATGGCCCCATATATGCTCTTT 813 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 TGGCAGATCTGCTCGGGAAAGAGTACTTTCTTCATGCTTATGGCCCCATATATGCTCTTT 778 Query 814 CTGCTGATGTTGTCACTAGTTTGGTTGCCCTCAAGAACAACAGTTTCAGGATGTTTAGCA 873 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 779 CTGCTGATGTTGTCACTAGTTTGGTTGCCCTCAAGAATAACAGTTTCAGGATGTTTAGCA 838 Query 874 ATGAGGACGTGACCATAGGTGCGTGGATGCTGGCAATGAACGTTAACCACGAGAACCTTC 933 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 839 ATGAGGACGTGACTATAGGTGCGTGGATGCTGGCAATGAACGTTAACCACGAGAATCTTC 898 Query 934 ACACCCTTTGTGAACCAGAGTGCTCACCATACTCCATTGCTGTTTGGGATATACCAAAAT 993 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 899 ACACCCTTTGTGAACCAGAGTGCTCACCATACTCCATTGCTGTTTGGGATATACCGAAAT 958 Query 994 GCTCAGGCCTCTGTAACCCAGAGAAAAGGATGTTGGAACTTCACATGCTAGAGAGCTGCT 1053 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 959 GCTCAGGCCTCTGTAACCCAGAGAAAAGGATGTTGGAACTTCACAACCTAGAGAGCTGCT 1018 Query 1054 CAAAAAGCCCGACTTTGCCATCGGATGATGAGTGATCTACC 1094 |||||| ||||||||||||||| |||||||| ||||||||| Sbjct 1019 CAAAAACCCCGACTTTGCCATCAGATGATGAATGATCTACC 1059 > Ahg474455 jgi|Araly1|474455|fgenesh2_kg.1__4409__AT1G53290.1 Length=1176 Score = 917 bits (496), Expect = 0.0 Identities = 863/1037 (83%), Gaps = 38/1037 (4%) Strand=Plus/Plus Query 81 CACGCGC-GTCCATCATTCTTCACGCGCCGATCGACGCCT-TTGATCGTCTTCACCT-CT 137 ||||||| || ||||| || |||||||||||| ||| || ||| |||| || || | || Sbjct 79 CACGCGCGGT-CATCACTCGCCACGCGCCGATCAACGGCTCTTG-TCGTATTAACTTCCT 136 Query 138 CTCGCTATCGGTCTAACCGGTTTC-CTTTTCGGATTATCAACGATCCTTTTCCCTGGTCT 196 | |||||||| | |||||||| | ||| ||| | | ||| ||||| || ||||| Sbjct 137 -TAGCTATCGGAATCGCCGGTTTCACATTT-GGACTCGCCGTGATTCTTTTACCGGGTCT 194 Query 197 CCGGTTATCTGGCCGGT-CCTGCCTCACCAAC-TTGCCACCGAAGACTGTTAAAATCGTC 254 ||| ||| | || | || ||| | || ||| | || |||||||| || | |||| Sbjct 195 CCGATTAACCGGTC-GTAATTGCTTGACGAACACT-CCTCCGAAGACGGTGCGAGTCGTT 252 Query 255 TGGGACGTCGCTGGTAATAGT-AT--C---GTTAATGGCG-AAGTCAAGAGGCACAAAGT 307 ||||||||||| || |||||| || | ||| ||||| |||| |||||||| || || Sbjct 253 TGGGACGTCGCCGGAAATAGTAATGGCGTTGTTGGTGGCGAAAGT-AAGAGGCATAAGGT 311 Query 308 GATGGGATTCGTCGGAATCCAGACCGGATTCAGATCTGCTGGCCGGAGACGAGCTCTCAG 367 ||||||||||| || || || |||||||| |||||||||||||||||||| | || || Sbjct 312 TATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGGAGACGATCACTTAG 371 Query 368 GAACACATGGATGCCGTCCGATCCCGAAGGCCTTCGAAGATTGGAAGAATCAACAGGATT 427 ||| |||||||||||||| ||||| || || |||||| | ||||||||||| || ||||| Sbjct 372 GAAGACATGGATGCCGTCAGATCCAGATGGTCTTCGACGTTTGGAAGAATCTACGGGATT 431 Query 428 AGCCATTAGATTTATTATAGGCAAAACCAAAGACGAGGCCAAAATGGTTGAGCTGAGAAG 487 ||||||||| ||||| ||||| ||||||||| ||||||| ||||||| |||||| ||||| Sbjct 432 AGCCATTAGGTTTATGATAGGGAAAACCAAAAACGAGGCGAAAATGGCTGAGCTTAGAAG 491 Query 488 CGAAGTTGCA-ATGTACGATGACTTTATACTGCTCGATATCGAGGAGGAGTACAGTAAGC 546 ||| | ||| | ||| ||||||||| | | ||| |||||||| |||||||||||||||| Sbjct 492 GGAAATCGCAGA-GTATGATGACTTTGTTCAGCTAGATATCGAAGAGGAGTACAGTAAGC 550 Query 547 TCCCCTACAAAACTTTGGCTTTCTTCAAAGCTGCATATGCACTATATGATTCAGAATTCT 606 |||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||| Sbjct 551 TCCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCATATGCGCTTTATGATTCTGAATTCT 610 Query 607 ATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGTTTGTCTTTACTGTTGGCTA 666 |||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||| | Sbjct 611 ATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCTCTCTACTATTGGCAA 670 Query 667 AAGAGCGGGGTCACTCGCAGACATACCTTGGATGCATGAAAAAAGGTCCGGTTTTCACAG 726 |||||||| ||||||| || || ||||| |||||| ||||||| |||||||||||||||| Sbjct 671 AAGAGCGGAGTCACTCTCAAACGTACCTAGGATGCTTGAAAAAGGGTCCGGTTTTCACAG 730 Query 727 ATCCAAAGCTTAAATGGTATGAACCTTTGGCAGATCTGCTCGGGAAA-GAGTACTTTCTT 785 |||| |||||||||||||||||||| ||| | ||||||| |||||| |||||||||||| Sbjct 731 ATCCTAAGCTTAAATGGTATGAACCATTGTCTCATCTGCT-GGGAAAAGAGTACTTTCTT 789 Query 786 CATGCTTATGGCCCCATATATGCTCTTTCTGCTGATGTTGTCA-CTAGTTTGGTTGCCCT 844 ||||||||||| || || |||||||| ||||||||||| || | | |||||||||||||| Sbjct 790 CATGCTTATGGTCCGATTTATGCTCTCTCTGCTGATGTGGT-AGCAAGTTTGGTTGCCCT 848 Query 845 CAAGAACAA----CA-GTT-T------CAGGATGTTTAGCAATGAGGACGTGACCATAGG 892 |||||| || || ||| | ||||||||||| ||| |||||||| || ||||| Sbjct 849 CAAGAATAATAGGCATGTTATGTTTTTCAGGATGTTTAACAACGAGGACGTAACAATAGG 908 Query 893 TGCGTGGATGCTGGCAATGAACGTTAACCACGAGAACCTTCACACCCTTTGTGAACCAGA 952 ||||||||||||||||||||| || ||||||||||||| ||||| |||||| |||||||| Sbjct 909 TGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTGCGAACCAGA 968 Query 953 GTGCTCACCATACTCCATTGCTGTTTGGGATATACCAAAATGCTCAGGCCTCTGTAACCC 1012 ||||| || | ||| ||||||||||||| || || ||||||||||| || |||||||| Sbjct 969 ATGCTCGCCTTCCTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCTTTGTAACCC 1028 Query 1013 AGAGAAAAGGATGTTGGAACTTCACATGCTAGAGAGCTGCTCAAAAAGCCCGACTTTGCC 1072 |||||||||||||||||||||||||| || ||| |||||||| ||||||||||||||||| Sbjct 1029 AGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCCGACTTTGCC 1088 Query 1073 ATCGGATGATGAGTGAT 1089 ||| |||||||| |||| Sbjct 1089 ATCAGATGATGAATGAT 1105 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54011967410 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5