BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14960.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929279 jgi|Araly1|929279|scaffold_301736.1 1650 0.0
Ahg474455 jgi|Araly1|474455|fgenesh2_kg.1__4409__AT1G53290.1 917 0.0
> Ahg929279 jgi|Araly1|929279|scaffold_301736.1
Length=1074
Score = 1650 bits (893), Expect = 0.0
Identities = 1006/1061 (95%), Gaps = 6/1061 (1%)
Strand=Plus/Plus
Query 38 GATCCG-TCGTT-ACAAAATCATGTCATCTTCTCCCAAGCTGTTTCACGCGCGTCCATCA 95
|||||| ||||| ||||||||||| |||||||||| ||||||||| ||||||| ||||||
Sbjct 1 GATCCGTTCGTTAACAAAATCATGCCATCTTCTCCTAAGCTGTTTAACGCGCGGCCATCA 60
Query 96 TTCTTCACGCGCCGATCGACGCCTTTGATCGTCTTCACCTCTCTCGCTATCGGTCTAACC 155
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 CTCTTCACGCGCCGATCGACGCCTTTGATCGTCTTCACCTCTCTTGCTATCGGTCTAACC 120
Query 156 GGTTTCCTTTTCGGATTATCAACGATCCTTTTCCCTGGTCTCCGGTTATCTGGCCGGTCC 215
|||||||||||||||||||| ||||| |||||||| |||||||||||||| |||||| ||
Sbjct 121 GGTTTCCTTTTCGGATTATCCACGATTCTTTTCCCGGGTCTCCGGTTATCCGGCCGGACC 180
Query 216 TGCCTCACCAACTTGCCACCGAAGACTGTTAAAATCGTCTGGGACGTCGCTGGTAATAGT 275
||||||||||||||||| |||||||| |||||||||| ||||||||||||||| ||||||
Sbjct 181 TGCCTCACCAACTTGCCTCCGAAGACGGTTAAAATCGCCTGGGACGTCGCTGGAAATAGT 240
Query 276 ATCGTTAATGGCGAAGTCAAGAGGCACAAAGTGATGGGATTCGTCGGAATCCAGACCGGA 335
|||||||| ||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 241 ATCGTTAACGGCGAAGTCAAAAGGCACAAGGTTATGGGATTCGTCGGAATCCAGACCGGA 300
Query 336 TTCAGATCTGCTGGCCGGAGACGAGCTCTCAGGAACACATGGATGCCGTCCGATCCCGAA 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCAGATCTGCTGGCCGGAGACGAGCTCTCAGGAACACATGGATGCCGTCCGATCCCGAA 360
Query 396 GGCCTTCGAAGATTGGAAGAATCAACAGGATTAGCCATTAGATTTATTATAGGCAAAACC 455
||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 GGCCTTCGACGATTGGAGGAATCAACAGGATTGGCCATTAGATTTATTATAGGCAAAACC 420
Query 456 AAAGACGAGGCCAAAATGGTTGAGCTGAGAAGCGAAGTTGCA-ATGTACGATGACTTTAT 514
||||| ||||||||||||| |||||| ||||| ||| | ||| | |||||||||||||||
Sbjct 421 AAAGATGAGGCCAAAATGGCTGAGCTTAGAAGGGAAATCGCAGA-GTACGATGACTTTAT 479
Query 515 ACTGCTCGATATCGAGGAGGAGTACAGTAAGCTCCCCTACAAAACTTTGGCTTTCTTCAA 574
|||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 ACTGCTAGATCTCGAGGAGGAGTATAGTAAGCTCCCCTACAAAACTTTGGCTTTCTTCAA 539
Query 575 AGCTGCATATGCAC-TATATGATTCAGAATTCTATGTCAAAGCTGATGATGATATATACT 633
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGCTGCATACGC-CTTATATGATTCAGAATTCTATGTCAAAGCTGATGATGATATATACT 598
Query 634 TGAGGCCAGATCGTTTGTCTTTACTGTTGGCTAAAGAGCGGGGTCACTCGCAGACATACC 693
||||||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||
Sbjct 599 TGAGGCCAGATCGGTTGTCTTTGCTGTTGGCTAAAGAGCGGACTCACTCGCAGACGTACC 658
Query 694 TTGGATGCATGAAAAAAGGTCCGGTTTTCACAGATCCAAAGCTTAAATGGTATGAACCTT 753
| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 659 TCGGATGCCTGAAAAAAGGTCCGGTTTTCACAGATCCAAAGCTCAAATGGTATGAACCTT 718
Query 754 TGGCAGATCTGCTCGGGAAAGAGTACTTTCTTCATGCTTATGGCCCCATATATGCTCTTT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 TGGCAGATCTGCTCGGGAAAGAGTACTTTCTTCATGCTTATGGCCCCATATATGCTCTTT 778
Query 814 CTGCTGATGTTGTCACTAGTTTGGTTGCCCTCAAGAACAACAGTTTCAGGATGTTTAGCA 873
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 779 CTGCTGATGTTGTCACTAGTTTGGTTGCCCTCAAGAATAACAGTTTCAGGATGTTTAGCA 838
Query 874 ATGAGGACGTGACCATAGGTGCGTGGATGCTGGCAATGAACGTTAACCACGAGAACCTTC 933
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 ATGAGGACGTGACTATAGGTGCGTGGATGCTGGCAATGAACGTTAACCACGAGAATCTTC 898
Query 934 ACACCCTTTGTGAACCAGAGTGCTCACCATACTCCATTGCTGTTTGGGATATACCAAAAT 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 899 ACACCCTTTGTGAACCAGAGTGCTCACCATACTCCATTGCTGTTTGGGATATACCGAAAT 958
Query 994 GCTCAGGCCTCTGTAACCCAGAGAAAAGGATGTTGGAACTTCACATGCTAGAGAGCTGCT 1053
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 959 GCTCAGGCCTCTGTAACCCAGAGAAAAGGATGTTGGAACTTCACAACCTAGAGAGCTGCT 1018
Query 1054 CAAAAAGCCCGACTTTGCCATCGGATGATGAGTGATCTACC 1094
|||||| ||||||||||||||| |||||||| |||||||||
Sbjct 1019 CAAAAACCCCGACTTTGCCATCAGATGATGAATGATCTACC 1059
> Ahg474455 jgi|Araly1|474455|fgenesh2_kg.1__4409__AT1G53290.1
Length=1176
Score = 917 bits (496), Expect = 0.0
Identities = 863/1037 (83%), Gaps = 38/1037 (4%)
Strand=Plus/Plus
Query 81 CACGCGC-GTCCATCATTCTTCACGCGCCGATCGACGCCT-TTGATCGTCTTCACCT-CT 137
||||||| || ||||| || |||||||||||| ||| || ||| |||| || || | ||
Sbjct 79 CACGCGCGGT-CATCACTCGCCACGCGCCGATCAACGGCTCTTG-TCGTATTAACTTCCT 136
Query 138 CTCGCTATCGGTCTAACCGGTTTC-CTTTTCGGATTATCAACGATCCTTTTCCCTGGTCT 196
| |||||||| | |||||||| | ||| ||| | | ||| ||||| || |||||
Sbjct 137 -TAGCTATCGGAATCGCCGGTTTCACATTT-GGACTCGCCGTGATTCTTTTACCGGGTCT 194
Query 197 CCGGTTATCTGGCCGGT-CCTGCCTCACCAAC-TTGCCACCGAAGACTGTTAAAATCGTC 254
||| ||| | || | || ||| | || ||| | || |||||||| || | ||||
Sbjct 195 CCGATTAACCGGTC-GTAATTGCTTGACGAACACT-CCTCCGAAGACGGTGCGAGTCGTT 252
Query 255 TGGGACGTCGCTGGTAATAGT-AT--C---GTTAATGGCG-AAGTCAAGAGGCACAAAGT 307
||||||||||| || |||||| || | ||| ||||| |||| |||||||| || ||
Sbjct 253 TGGGACGTCGCCGGAAATAGTAATGGCGTTGTTGGTGGCGAAAGT-AAGAGGCATAAGGT 311
Query 308 GATGGGATTCGTCGGAATCCAGACCGGATTCAGATCTGCTGGCCGGAGACGAGCTCTCAG 367
||||||||||| || || || |||||||| |||||||||||||||||||| | || ||
Sbjct 312 TATGGGATTCGTTGGTATTCAAACCGGATTTGGATCTGCTGGCCGGAGACGATCACTTAG 371
Query 368 GAACACATGGATGCCGTCCGATCCCGAAGGCCTTCGAAGATTGGAAGAATCAACAGGATT 427
||| |||||||||||||| ||||| || || |||||| | ||||||||||| || |||||
Sbjct 372 GAAGACATGGATGCCGTCAGATCCAGATGGTCTTCGACGTTTGGAAGAATCTACGGGATT 431
Query 428 AGCCATTAGATTTATTATAGGCAAAACCAAAGACGAGGCCAAAATGGTTGAGCTGAGAAG 487
||||||||| ||||| ||||| ||||||||| ||||||| ||||||| |||||| |||||
Sbjct 432 AGCCATTAGGTTTATGATAGGGAAAACCAAAAACGAGGCGAAAATGGCTGAGCTTAGAAG 491
Query 488 CGAAGTTGCA-ATGTACGATGACTTTATACTGCTCGATATCGAGGAGGAGTACAGTAAGC 546
||| | ||| | ||| ||||||||| | | ||| |||||||| ||||||||||||||||
Sbjct 492 GGAAATCGCAGA-GTATGATGACTTTGTTCAGCTAGATATCGAAGAGGAGTACAGTAAGC 550
Query 547 TCCCCTACAAAACTTTGGCTTTCTTCAAAGCTGCATATGCACTATATGATTCAGAATTCT 606
|||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 551 TCCCTTACAAAACTTTGGCTTTCTTCAAAGCTGCATATGCGCTTTATGATTCTGAATTCT 610
Query 607 ATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGTTTGTCTTTACTGTTGGCTA 666
|||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||| |
Sbjct 611 ATGTCAAAGCTGATGATGATATATACTTGAGGCCAGATCGACTCTCTCTACTATTGGCAA 670
Query 667 AAGAGCGGGGTCACTCGCAGACATACCTTGGATGCATGAAAAAAGGTCCGGTTTTCACAG 726
|||||||| ||||||| || || ||||| |||||| ||||||| ||||||||||||||||
Sbjct 671 AAGAGCGGAGTCACTCTCAAACGTACCTAGGATGCTTGAAAAAGGGTCCGGTTTTCACAG 730
Query 727 ATCCAAAGCTTAAATGGTATGAACCTTTGGCAGATCTGCTCGGGAAA-GAGTACTTTCTT 785
|||| |||||||||||||||||||| ||| | ||||||| |||||| ||||||||||||
Sbjct 731 ATCCTAAGCTTAAATGGTATGAACCATTGTCTCATCTGCT-GGGAAAAGAGTACTTTCTT 789
Query 786 CATGCTTATGGCCCCATATATGCTCTTTCTGCTGATGTTGTCA-CTAGTTTGGTTGCCCT 844
||||||||||| || || |||||||| ||||||||||| || | | ||||||||||||||
Sbjct 790 CATGCTTATGGTCCGATTTATGCTCTCTCTGCTGATGTGGT-AGCAAGTTTGGTTGCCCT 848
Query 845 CAAGAACAA----CA-GTT-T------CAGGATGTTTAGCAATGAGGACGTGACCATAGG 892
|||||| || || ||| | ||||||||||| ||| |||||||| || |||||
Sbjct 849 CAAGAATAATAGGCATGTTATGTTTTTCAGGATGTTTAACAACGAGGACGTAACAATAGG 908
Query 893 TGCGTGGATGCTGGCAATGAACGTTAACCACGAGAACCTTCACACCCTTTGTGAACCAGA 952
||||||||||||||||||||| || ||||||||||||| ||||| |||||| ||||||||
Sbjct 909 TGCGTGGATGCTGGCAATGAATGTCAACCACGAGAACCATCACATCCTTTGCGAACCAGA 968
Query 953 GTGCTCACCATACTCCATTGCTGTTTGGGATATACCAAAATGCTCAGGCCTCTGTAACCC 1012
||||| || | ||| ||||||||||||| || || ||||||||||| || ||||||||
Sbjct 969 ATGCTCGCCTTCCTCTGTTGCTGTTTGGGACATCCCTAAATGCTCAGGTCTTTGTAACCC 1028
Query 1013 AGAGAAAAGGATGTTGGAACTTCACATGCTAGAGAGCTGCTCAAAAAGCCCGACTTTGCC 1072
|||||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||
Sbjct 1029 AGAGAAAAGGATGTTGGAACTTCACAAGCAAGAAAGCTGCTCGAAAAGCCCGACTTTGCC 1088
Query 1073 ATCGGATGATGAGTGAT 1089
||| |||||||| ||||
Sbjct 1089 ATCAGATGATGAATGAT 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5