BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14970.1
Length=663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929280 jgi|Araly1|929280|scaffold_301737.1 843 0.0
> Ahg929280 jgi|Araly1|929280|scaffold_301737.1
Length=709
Score = 843 bits (456), Expect = 0.0
Identities = 599/667 (90%), Gaps = 14/667 (2%)
Strand=Plus/Plus
Query 1 ATGGTTTTTGATGCTGTCAATCCAGACCCCGACAGCTTCGTTTACTATTATCCGATCTAT 60
||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 21 ATGGTTTTTGATGCTGTCAATCCAGACCCCGACAGCTTCGTCTACTATGATCCGATCTAC 80
Query 61 AACGATGAAGGCGATTTTGGCAGAACCCAAAACTTGATGTTCAAGTTTCATTTATGTTAC 120
||||| |||||||||||| |||||||||||||||||| ||||| |||||| | ||||||
Sbjct 81 AACGACGAAGGCGATTTTCGCAGAACCCAAAACTTGACGTTCATTTTTCATGTGTGTTAC 140
Query 121 AATCTTGCCCCTGAAGTAAATTCAGATGGAGAAGATGAAAATCCTCTCGATCTTGAAACT 180
||||||||||||||||||||||||||||||||||| ||| || | | |||||||||||
Sbjct 141 AATCTTGCCCCTGAAGTAAATTCAGATGGAGAAGAAGAAGATGTTGACAATCTTGAAACT 200
Query 181 CTACT-CGTTGATCGAACTCACGAGTTTGATAAAGGATTGCTTTTCAGTGGAGATAGGGA 239
||| | || ||||| |||||| ||||||||||||| ||| ||||||||||||||||||||
Sbjct 201 CTAATCCG-TGATCAAACTCAAGAGTTTGATAAAGAATTACTTTTCAGTGGAGATAGGGA 259
Query 240 GCAAATACAAGTCATTGTCTGTCACATT-CTTGATTTGATTAAAGCCCCTCGTTATATTG 298
||| |||||||||||||||| |||| || |||||||||||||||||||||||||||| ||
Sbjct 260 GCAGATACAAGTCATTGTCTATCAC-TTGCTTGATTTGATTAAAGCCCCTCGTTATAGTG 318
Query 299 ATGTTGTTACAGAACTCATTGATGCGATCCTTGATTTAAAGAAGTGTGATAAGATCTCTA 358
| ||||||| | ||||||||||||| ||| ||||||| ||| || |||||||||||||||
Sbjct 319 AGGTTGTTAGAAAACTCATTGATGCAATCTTTGATTTGAAGGAGCGTGATAAGATCTCTA 378
Query 359 ACGTGAAAG-AGGTAGATGTAGTCATCAATGTTATTGTGTGGAGGTTTCCtgatgatgat 417
||||| | | |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 379 ACGTG-ATGAAGGTAGATGTAGTCATAAATGTTATTGTGTGGAGGTTTCCTGATGATGAT 437
Query 418 gatgatgatg-T-A-G-A--TGTGAGACTTGCGGTGGCCCCGGCGAGCAATGAAGCGGTG 471
|||||||||| | | | | ||||| ||||| |||||| |||||||||||||| ||| |
Sbjct 438 GATGATGATGATGATGTAGATGTGAAACTTGAGGTGGCTCCGGCGAGCAATGAGGCGATA 497
Query 472 GAGCAACACTTGGAGACGGTTGTTGTTGAGAATGAAAGTTGGTGTGTGATATGCATGGAT 531
||||| |||||||||||||||||||||||||| ||| | | ||||||||||||||||||
Sbjct 498 GAGCAGCACTTGGAGACGGTTGTTGTTGAGAACGAAGGATATTGTGTGATATGCATGGAT 557
Query 532 AAGATCCG-GATTGGATTGGATGTGGCTGCGGGTCGAATGCCGTGTTCTCACGTGTTTCA 590
| |||||| | |||||| |||| |||| ||||||||||||||||||||||||||||| ||
Sbjct 558 ACGATCCGAG-TTGGATCGGATATGGCAGCGGGTCGAATGCCGTGTTCTCACGTGTTCCA 616
Query 591 TCGCACGTGTGGTGAAGATTGGCTTAGGTGTAGTGGGATTTGTCCGGTGTGTCGTGCCAT 650
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 617 TCGCACGTGTGCTGAAGATTGGCTTAGGAGTAGTGGGATTTGTCCGGTGTGTCGTGCCAT 676
Query 651 GTTTCCG 657
|||||||
Sbjct 677 GTTTCCG 683
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24322421046
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5