BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G14990.1
Length=1545
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478924 jgi|Araly1|478924|fgenesh2_kg.3__1625__AT3G14990.1 2198 0.0
Ahg923873 jgi|Araly1|923873|scaffold_105154.1 1027 0.0
Ahg952632 jgi|Araly1|952632|scaffold_97500002.1 942 0.0
Ahg940266 jgi|Araly1|940266|scaffold_600810.1 228 1e-58
> Ahg478924 jgi|Araly1|478924|fgenesh2_kg.3__1625__AT3G14990.1
Length=1500
Score = 2198 bits (1190), Expect = 0.0
Identities = 1431/1540 (93%), Gaps = 45/1540 (3%)
Strand=Plus/Plus
Query 2 TGAGTCTTTCCTACTATTTTAACCCCATTAGTGACACTCCTTTCTTCTCCACTACACTCC 61
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TGAGTCTTTCCCACTATTTTAACCCCATTAGTGACACTCTTTTCTTCTCCACTACACTCC 60
Query 62 ATTTCTCTTTCTTCTTGACTCGACCATCGTTTCTCTAATCTCCGCAACTATGGCTTCATT 121
|||||||||||||| | | | | |||||||||||||||||||||||| |||
Sbjct 61 ATTTCTCTTTCTTC-T---T-G---A-----TCTCTAATCTCCGCAACTATGGCTACATC 107
Query 122 TACGAAAACGGTTTTGATCCCTATTGCGCACGGTACGGAGCCTCTAGAAGCGGTGGCGAT 181
|||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 108 TACGAAGACGGTTTTGATCCCTATTGCACACGGTACGGAGCCTTTAGAAGCGGTGGCGAT 167
Query 182 GATTACCGTGTTGCGTCGAGGTGGTGCTGACGTGACGGTGGCGTCTGTTGAGACTCAGGT 241
||| |||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 168 GATCACCGTGTTGCGTCGAGGTGGTGCTGACGTGACGGTGGCTTCCGTCGAGACTCAGGT 227
Query 242 TGGCGTTGATGCTTGTCATGGCATCAAGATGGTCGCTGATACTCTTCTCTCTGATATTAC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TGGCGTTGATGCTTGTCATGGCATCAAGATGGTCGCTGATACTCTTCTCTCTGATATTAC 287
Query 302 CGACTCTGTTTTCGACCTTATTGTGCTCCCCGGAGGGCTTCCCGGTGGCGAGACTCTTAA 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 CGACTCTGTTTTCGACCTTATTGTGCTCCCCGGAGGGCTTCCCGGTGGCGAGACTCTTAA 347
Query 362 AAACTGTAAATCTTTAGAGAACATGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGC 421
|||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 348 AAACTGTAAACCTTTAGAGAACATGGTTAAGAAACAAGACTCTGATGGACGACTTAACGC 407
Query 422 AGCTATATGTTGTGCTCCTGCCTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAA 481
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 408 AGCTATCTGTTGTGCTCCTGCGTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAAAA 467
Query 482 AGCAACGGGTTACCCTGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGA 541
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 468 AGCAACGGGTTACCCTGTTTTTATGGAGAAACTTGCAGCTACTTGTGCCACTGCTGTTGA 527
Query 542 GTCAAGAGTGCAAATTGATGGAAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGA 601
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 528 GTCAAGAGTGCAAATAGATGGAAGAATAGTGACTAGTCGTGGACCAGGAACCACCATTGA 587
Query 602 ATTCTCCATCACGCTTATAGAGCAGTTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAG 661
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 588 ATTCTCCGTCACGCTTATAGAGCAGTTGTTTGGGAAAGAGAAAGCTGATGAAGTCTCTAG 647
Query 662 TATCTTGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAAC 721
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TATCTTGCTGCTTCGTCCCAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAAC 707
Query 722 AAACTGGTCATTTGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAGTCAGAGGA 781
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GACCTGGTCATTCGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAGTCAGAGGA 767
Query 782 AATTGAAGCTATAGCGCTTGTAGATATCCTGAGGCGGGCAAAAGCAAATGTAGTGATTGC 841
||||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 768 AATTGAAGCCATTGCGCTTGTAGATATCCTGAGACGGGCAAAAGCAAACGTAGTGATTGC 827
Query 842 TGCAGTTGGTAACAGTTTGGAAGTTGAAGGATCTCGCAAAGCTAAGCTAGTAGCAGAAGT 901
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 828 TGCAGTTGGTAACAGTTTGGAAGTTGTAGGATCTCGCAAAGCTAAGCTAGTAGCAGAAGT 887
Query 902 TCTTCTTGATGAGGTTGCAGAGAAGTCGTTTGATCTGATTGTGTTACCTGGCGGTCTTAA 961
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 888 GCTTCTTGATGAAGTTGCAGAGAAGTCGTTCGATCTGATTGTGTTACCTGGCGGTCTTAA 947
Query 962 CGGTGCTCAAAGATTCGCAAGCTGCGAGAAGCTAGTTAATATGTTAAGGAAACAGGCAGA 1021
|||||||| ||||||||||||||||||||| || || |||||||||| ||| ||||||||
Sbjct 948 CGGTGCTCCAAGATTCGCAAGCTGCGAGAAACTGGTGAATATGTTAAAGAAGCAGGCAGA 1007
Query 1022 AGCAAACAAACCATATGGAGGAATCTGCGCATCGCCTGCTTACGTCTTCGAGCCTAATGG 1081
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1008 AGCAAACAAACCATATGGAGGAATCTGCGCATCGCCTGCGTACGTCTTCGAGCCTAATGG 1067
Query 1082 TTTACTCAAGGGTAAGAAGGCTACTACTCACCCAGTGGTGAGCGACAAACTTTCGGACAA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 TTTACTCAAGGGTAAGAAGGCTACTACTCACCCAGTGGTGAGCGACAAACTTTCGGACAA 1127
Query 1142 GAGTCACATTGAGCACAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGG 1201
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1128 GAGTCACATTGAGCATAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGG 1187
Query 1202 GACTGCAATGGAGTTTTCACTTGCCATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCTCT 1261
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1188 GACTGCAATGGAGTTTTCACTTGCGATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCACT 1247
Query 1262 TCAGCTCGGAAAGGCAACACTTGTGTGATTTCA-AACAATGAAAGTATGAGAGTGGCTTG 1320
|||||||| |||||| |||||||||||||||| ||||||||| |||||||||| ||||
Sbjct 1248 TCAGCTCGCAAAGGCCACACTTGTGTGATTTCCGAACAATGAAT-TATGAGAGTGACTTG 1306
Query 1321 AATAAAAAGAAGGCTTTGCCTTTTAGTTATCTCTCTCCATTAGTAATTACTTACTTTATG 1380
||||||| ||||||||||||||||||||||||||| || | ||| | | | |||
Sbjct 1307 AATAAAA-GAAGGCTTTGCCTTTTAGTTATCTCTC---AT-A-TAA---C--A-T--ATG 1352
Query 1381 ATATATGACATATGAGCTTGGCTTAGTGATTGGTGTGTAACTTTATGCCTTTATAAATGA 1440
| | ||| || | | | |||| ||| |||| ||||||||||||||||||||||
Sbjct 1353 A-----G-CATTTGGG-T-G----AGTGGTTGCTGTGAAACTTTATGCCTTTATAAATGA 1400
Query 1441 ATAAACGAGATTTTTCTATGTATGTTGCCGATATTTTCTTTAAACCTCTGCAAGAGCTA- 1499
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||
Sbjct 1401 ATAAACGAGATTTTTCTATGTATGTGGCCGATATTTTCTTTAACCCTCTGCAAGAG-TAA 1459
Query 1500 GAGGGTGTGCTGGAGaaaaaaaTT--ATTTTATGGAGAAA 1537
|||||| | || ||| || | ||| ||||||||||||||
Sbjct 1460 GAGGGTTTTCTTGAGGAAGATATTTTATTTTATGGAGAAA 1499
> Ahg923873 jgi|Araly1|923873|scaffold_105154.1
Length=1354
Score = 1027 bits (556), Expect = 0.0
Identities = 1012/1228 (82%), Gaps = 47/1228 (4%)
Strand=Plus/Plus
Query 81 TCGACCATCGTTTCTCTAATCTCCGCAACTATGGCTTCATTTACGAA-AACGGTTTTGA- 138
||||| ||| |||||| ||||| ||||||||| |||||| | | || || ||||||||
Sbjct 131 TCGACGATC-CTTCTCT-ATCTCTGCAACTATGTCTTCATCTGCTAAGAA-GGTTTTGAT 187
Query 139 TCCCTATTGCGCACGGTACGGAGCC-TCTAGAAGCGGTGGCGATGAT-TACCGTGTTGCG 196
|||| ||||||| ||||||||||| | | |||||||||| |||||| | ||| | ||
Sbjct 188 TCCC-GTTGCGCATGGTACGGAGCCGT-TTGAAGCGGTGGTGATGATCGA-TGTGCTACG 244
Query 197 TCGAGGTGGTGCTGACGTGACGGTGGCGTCTGTTGAGACTCAGGTTGGCGTTGATGCTTG 256
||||| || || || || ||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 245 GCGAGGCGGAGCGGATGTTACGGTGGCGTCCGTTGAGAATCAGGTCGGCGTTGATGCTTG 304
Query 257 TCATGGCATCAAGATGGTCGCTGATACTCTTCTCTCTGATATTACCGACTCTGTTTTCGA 316
||||| |||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 305 CCATGGAATCAAGATGGTCGCTGATACTCTTCTCTCTGAGATCACCGACTCCGTTTTCGA 364
Query 317 CCTTATTGTGCTCCCCGGAGGGCTTCCCGGTGGCGAGACTCTTAAAAACTGTAAATCTTT 376
||||||| ||||||| ||||| ||||| || || ||||||||||| || |||||| ||||
Sbjct 365 CCTTATTATGCTCCCTGGAGGACTTCCGGGCGGTGAGACTCTTAAGAATTGTAAACCTTT 424
Query 377 AGAGAACATGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGCAGCTATATGTTGTGC 436
|||||| ||||| ||||| |||||| ||||||| ||||||||||| ||||| ||||||||
Sbjct 425 AGAGAAGATGGTGAAGAAGCAAGACACTGATGGACGACTTAACGCTGCTATCTGTTGTGC 484
Query 437 TCCTGCCTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCC 496
||||| ||||| ||||||||||||||||||||||| || || ||||| || |||||||
Sbjct 485 GCCTGCGTTGGCGCTTGGTACTTGGGGTCTACTAGAGGGTAAAAAAGCTACATGTTACCC 544
Query 497 TGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGAGTCAAGAGTGCAAAT 556
||||||||||||||||| || ||| | | || || |||||||||||||||||| ||||
Sbjct 545 GGTTTTTATGGAGAAACTAGCTGCT--T-GCGCGACAGCTGTTGAGTCAAGAGTGGAAAT 601
Query 557 TGATGG-AAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGAATTCTCCATCACGC 615
|||||| |||| ||||||||||| | || || ||||| ||||| |||||||| ||||||
Sbjct 602 TGATGGGAAGA-TAGTGACCAGTAGAGGGCCTGGAACTACCATGGAATTCTCTGTCACGC 660
Query 616 TTATAGAGCAG-TTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAGTATCTTGCTGCTT 674
|| | ||||| || || |||||||| ||||||| ||||||||| | |||| || |
Sbjct 661 TTGTGGAGCAACTTCTT-GGGAAAGAGAAAGCTGTTGAAGTCTCTGGCCCCTTGGTGATG 719
Query 675 CGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAA-CAAACTGGTCATT 733
||||| ||||||||||| |||| |||| ||||||||||||||||| ||| |||||||||
Sbjct 720 CGTCCCAACCCTGGTGATGAGTATACTATTACTGAGCTTAACCAAGTCAA-CTGGTCATT 778
Query 734 TGAAGATACACCACAGATTCTCGTACCCATTGCAGA-GGAGTCAGAGGAAATTGAAGCTA 792
|| | ||| ||||||||||| |||||||||||||| || ||||||||||| ||||||
Sbjct 779 CGACGGTACCCCACAGATTCTTGTACCCATTGCAGATGGC-TCAGAGGAAATGGAAGCTG 837
Query 793 TAGCGCTTGTAGATATCCTGAGGCGGGCAAAAGCAAATGTAGT-GATTGCTGCAG-TTGG 850
| || | | ||| ||||||||||||||||||||||||| || | ||||||| | ||||
Sbjct 838 TTGCTATCATTGATGTCCTGAGGCGGGCAAAAGCAAATGTTGTCG-TTGCTGC-GCTTGG 895
Query 851 TAACAGTTTGGAAGTTGAAGGATCTCGCAAAG-CTAAGCTAGTAGCAGAAGTTCTTCTTG 909
||||||||||||||| | || |||||| |||| | ||||| || ||||| || ||||| |
Sbjct 896 TAACAGTTTGGAAGTGGTAGCATCTCGGAAAGTC-AAGCTGGTGGCAGATGTGCTTCTCG 954
Query 910 ATGAGGTTGCAGAGAAGTCGTTTGATCTGATTGTGTTACCTGGCGGTCTTAAC-GGTGCT 968
|||||| || | |||| | || |||||||||||||| ||||| ||||| | ||||||
Sbjct 955 ATGAGGCTGAAAAGAATTTGTACGATCTGATTGTGTTGCCTGGTGGTCT-AGGTGGTGCT 1013
Query 969 CAAAG-ATTCGCAAGCTGCG-AGAAGCTAGTTAATATGTTAAGGAAACAGGCAGAAGCAA 1026
|| | ||| ||||| | || |||||||||| |||||||||| ||| ||||| ||| |||
Sbjct 1014 GAA-GCATTTGCAAGTT-CGGAGAAGCTAGTGAATATGTTAAAGAAGCAGGCGGAATCAA 1071
Query 1027 ACAAACCATATGGAGGAATCTGCGCATCGCCTGCT-TACGTCTTCGAGCCTA-ATGGTTT 1084
||||||||||||||| ||| || || || |||||| | || || ||||| | |||||||
Sbjct 1072 ACAAACCATATGGAGCAATTTGTGCCTCTCCTGCTCTG-GTGTTTGAGCC-ACATGGTTT 1129
Query 1085 ACTCAAGGGTAAGAAGGCTACTA-C-TCACCCAGTGGTGAGC-GACAAACTTTCGGACAA 1141
|||||||||||||||||| || | | | ||||| || || | |||||| ||||| |
Sbjct 1130 ACTCAAGGGTAAGAAGGCAAC-AGCGTT-CCCAGCAATGTGCAG-CAAACTGACGGACCA 1186
Query 1142 GAGTCACATTGAGCA-CAGAGTCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAG 1200
||||||||| ||||| | ||||| |||| || || ||| ||||||||||||| | |||||
Sbjct 1187 GAGTCACATCGAGCATC-GAGTCTTGGTGGACGGCAATCTCATAACAAGCAGGGGTCCAG 1245
Query 1201 GGAC-TGCAATGGAGTTTTCACTTGCCATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCT 1259
| || | || |||||||| | || || ||||| || |||||||||||||| |||||||
Sbjct 1246 GAACCT-CATTGGAGTTTGCGCTCGCAATTGTAGAGAAGTTTTACGGGCGTGAGAAAGGA 1304
Query 1260 CTTCAGCTCGGAAAGGCAACACTTGTGT 1287
|||||||||| |||||||||||||||||
Sbjct 1305 CTTCAGCTCGCAAAGGCAACACTTGTGT 1332
> Ahg952632 jgi|Araly1|952632|scaffold_97500002.1
Length=907
Score = 942 bits (510), Expect = 0.0
Identities = 562/588 (96%), Gaps = 0/588 (0%)
Strand=Plus/Plus
Query 364 ACTGTAAATCTTTAGAGAACATGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGCAG 423
|||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1 ACTGTAAACCTTTAGAGAACATGGTTAAGAAACAAGACTCTGATGGACGACTTAACGCAG 60
Query 424 CTATATGTTGTGCTCCTGCCTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAG 483
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CTATCTGTTGTGCTCCTGCGTTGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAAAAAG 120
Query 484 CAACGGGTTACCCTGTTTTTATGGAGAAACTTGCGGCTACTTGTGCAACTGCTGTTGAGT 543
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 121 CAACGGGTTACCCTGTTTTTATGGAGAAACTTGCAGCTACTTGTGCCACTGCTGTTGAGT 180
Query 544 CAAGAGTGCAAATTGATGGAAGAATAGTGACCAGTCGTGGACCAGGAACCACCATTGAAT 603
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 CAAGAGTGCAAATAGATGGAAGAATAGTGACTAGTCGTGGACCAGGAACCACCATTGAAT 240
Query 604 TCTCCATCACGCTTATAGAGCAGTTGTTTGGGAAAGAAAAAGCTGATGAAGTCTCCAGTA 663
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 241 TCTCCGTCACGCTTATAGAGCAGTTGTTTGGGAAAGAGAAAGCTGATGAAGTCTCTAGTA 300
Query 664 TCTTGCTGCTTCGTCCTAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAACAA 723
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 301 TCTTGCTGCTTCGTCCCAACCCTGGTGAGGAGTTTACTTTTACTGAGCTTAACCAAACGA 360
Query 724 ACTGGTCATTTGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAGTCAGAGGAAA 783
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCTGGTCATTCGAAGATACACCACAGATTCTCGTACCCATTGCAGAGGAGTCAGAGGAAA 420
Query 784 TTGAAGCTATAGCGCTTGTAGATATCCTGAGGCGGGCAAAAGCAAATGTAGTGATTGCTG 843
||||||| || |||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 421 TTGAAGCCATTGCGCTTGTAGATATCCTGAGACGGGCAAAAGCAAACGTAGTGATTGCTG 480
Query 844 CAGTTGGTAACAGTTTGGAAGTTGAAGGATCTCGCAAAGCTAAGCTAGTAGCAGAAGTTC 903
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 481 CAGTTGGTAACAGTTTGGAAGTTGTAGGATCTCGCAAAGCTAAGCTAGTAGCAGAAGTGC 540
Query 904 TTCTTGATGAGGTTGCAGAGAAGTCGTTTGATCTGATTGTGTTACCTG 951
|||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 541 TTCTTGATGAAGTTGCAGAGAAGTCGTTCGATCTGATGGTGTTACCTG 588
Score = 329 bits (178), Expect = 3e-89
Identities = 199/209 (95%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 1102 CTACTACTCACCCAGTGGTGAGCGACAAACTTTCGGACAAGAGTCACATTGAGCACAGAG 1161
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 700 CTACTACTCACCCAGTAGTGAGCGACAAACTTTCGGATAAGAGTCACATTGAGCATAGAG 759
Query 1162 TCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGGGACTGCAATGGAGTTTTCAC 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 TCGTGGTAGATGGAAATGTCATAACAAGCAGAGCTCCAGGGACTGCAATGGAGTTTTCAC 819
Query 1222 TTGCCATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCTCTTCAGCTCGGAAAGGCAACAC 1281
|||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||
Sbjct 820 TTGCGATTGTCGAAAAGTTTTACGGGCGAGAGAAAGCACTTCAGCTCGCAAAGGCCACAC 879
Query 1282 TTGTGTGATTTCA-AACAATGAAAGTATG 1309
|||||||||||| ||||||||| |||||
Sbjct 880 TTGTGTGATTTCCGAACAATGAA-GTATG 907
> Ahg940266 jgi|Araly1|940266|scaffold_600810.1
Length=1082
Score = 228 bits (123), Expect = 1e-58
Identities = 137/144 (95%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 385 TGGTCAAGAAACAAGACTCTGATGGCCGACTTAACGCAGCTATATGTTGTGCTCCTGCCT 444
|||| || ||||||||||| |||| ||||||||||||||||| |||||||||||||| |
Sbjct 206 TGGTAAACAAACAAGACTCCAATGGACGACTTAACGCAGCTATCTGTTGTGCTCCTGCGT 265
Query 445 TGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCCTGTTTTTA 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TGGCTCTTGGTACTTGGGGTCTACTAGAAGGCAAGAAAGCAACGGGTTACCCTGTTTTTA 325
Query 505 TGGAGAAACTTGCGGCTACTTGTG 528
||||||||||||||||||||||||
Sbjct 326 TGGAGAAACTTGCGGCTACTTGTG 349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57859082155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5