BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15000.1
Length=1563
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478926 jgi|Araly1|478926|fgenesh2_kg.3__1627__AT3G15000.1 2218 0.0
Ahg887758 jgi|Araly1|887758|Al_scaffold_0975_1 601 6e-171
> Ahg478926 jgi|Araly1|478926|fgenesh2_kg.3__1627__AT3G15000.1
Length=1489
Score = 2218 bits (1201), Expect = 0.0
Identities = 1400/1495 (94%), Gaps = 18/1495 (1%)
Strand=Plus/Plus
Query 13 TTTTCACACTCTCTCCTAGGGTTTTATCTGCGAAGCCCAATCTAGAGCTTCCATGGCGAC 72
||| ||||||||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1 TTTACACACTCTCGGCTAGGGTTTTGTCTGCGAAACCCAATCTAGAGCTTCCATGGCGAC 60
Query 73 GCATACCATTTCTCGATCCATTCTTTGCCGACCGGCGAAATCTCTTTCGTTTCTGTTCAC 132
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 GCATACCATTTCTCGCTCCATTCTTTGCCGACCGGCGAAATCTCTTTCCCTTCTGTTCAC 120
Query 133 GCGATCCTTTGCTTCATCTGCTCCTCTCG-CCAAATCTCCGGCGTCTTCTCTGCTCAGCC 191
|||||| |||||||||||||||||||||| | |||| ||||||||| |||||||||||||
Sbjct 121 GCGATCTTTTGCTTCATCTGCTCCTCTCGTCAAAAT-TCCGGCGTCGTCTCTGCTCAGCC 179
Query 192 GGTCCCGTCCTCTGGTCGCCGCTTTTTCCTCCGTTTTCCGTGGCGGCCTTGTGTCTGTCA 251
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 GTTCCCGTCCTCTCGTCGCCGCTTTTTCCTCCGTTTTCCGTGGCGGCCTTGTGTCTGTTA 239
Query 252 AAGGTCTCTCGACGCAGGCTACATCGTCTTCTCTGAACGACCCGAATCCCAACTGGTCGA 311
|||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 240 AAGGTCTCTCAACGCAGGCTACGTCGTCTTCTCTGAACGATCCGAACCCCAACTGGTCGA 299
Query 312 ACAGGCCACCTAAGGAGACGATCCTGCTCGATGGTTGCGATTTCGAGCACTGGCTTGTCG 371
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 ACAGGCCACCTAAGGAGACGATCCTGCTCGATGGATGCGATTTCGAGCACTGGCTTGTCG 359
Query 372 TCGTGGAGCCACCTCAGGGTGAGCCTACTAGAGATGAAATCATTGATAGCTACATCAAAA 431
||||| | ||||| ||||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct 360 TCGTGAATCCACCGGAGGGTGATCCTACTAGAGACGATATCATTGATAGTTACATCAAAA 419
Query 432 CCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGGATGAAGATCTACTCGGTTTCAA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGGATGAAGATCTACTCGGTTTCAA 479
Query 492 CTAGGTGCTACTATGCTTTTGGGGCACTTGTGTCAGAAGATCTTTCTCACAAGTTAAAAG 551
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 480 CTAGGTGCTACTATGCTTTTGGAGCCCTTGTGTCAGAAGATCTTTCTCACAAGTTAAAAG 539
Query 552 AGTTGTCAAATGTGCGCTGGGTTCTTCCTGACTCTTACCTGGATGTGAGGAACAAAGACT 611
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGTTGCCAAATGTGCGCTGGGTTCTTCCTGACTCTTACCTGGATGTGAGGAACAAAGACT 599
Query 612 ATGGAGGGGAACCTTTCATCGATGGGAAGGCTGTTCCTTATGATCCTAAGTACCACGAGG 671
| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||
Sbjct 600 ACGGAGGGGAACCTTTCATCGATGGCAAGGCTGTTCCTTATGATCCCAAGTACCATGAGG 659
Query 672 AGTGGATAAGGAACAATGCTAGAGCAAATGAAAGGAACAGACGCAATGACCGTCCTCGCA 731
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 660 AGTGGATAAGGAACAATGCTAGAGCAAATGAAAGAAACAGACGCAATGATCGTCCTCGCA 719
Query 732 ACAATGATAGAAGCAGAAACTTTGAGAGGAGAAGAGAGAACATGGCAGGAGGCcctcctc 791
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACTTTGATAGAACCAGAAACTTTGAGAGGAGAAGAGAGAACATGGCAGGAGGCCCTCCTC 779
Query 792 ctcaacgtcctcccatgggaggccctcctcctcctccGCACATCGGTGGCTCTGCACCTC 851
||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 780 CTCAACGTCCTCCAATGGGAGGTCCTCCTCCTCCTCCGCACATGGGTGGCTCTGCTCCTC 839
Query 852 CTCCGCCTCATATGGGTGGCTCTGCACCTCCTCCACCTCACATGGGGCAGAACTATGG-- 909
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 840 CTCCGCCTCACATGGGTGGCTCTGCACCTCCTCCACCTCACATGGGGCAGAACTACGGGG 899
Query 910 -ACCACCACCACCAAACAACATGGGAGGACCAAGGCATCCACC-ACCTTATGGAGCACCA 967
||||||||||||||||||||||||||||| ||||| ||||| | || |||||| ||||
Sbjct 900 GACCACCACCACCAAACAACATGGGAGGACAAAGGCCGCCACCTAACT-ATGGAGGACCA 958
Query 968 CCGCAAAACAACATGGGAGGACCGAGGCCACCTC-AGAACTATGGAGGAACACCACCTCC 1026
|||||||||||||||||||||| ||||||||| | | |||||||||||| ||||||||||
Sbjct 959 CCGCAAAACAACATGGGAGGACAGAGGCCACCACCA-AACTATGGAGGAGCACCACCTCC 1017
Query 1027 CAACTATGGAGGAGCACCACCAGCAAACAACATGGGAGGAGCACCACCACCAAACTATGG 1086
||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1018 GAACTACGGAGGAGCACCACCAGCAAACAACATGGGAGGAGGACCACCACCTAACTATGG 1077
Query 1087 AGGAGGACCACCACCTCAA-TATGGAGCAGTACCACCACCTCAA-TACGGAGGAGCACCC 1144
||||| ||||||||| || ||||||| || |||||||||| || |||||||||||||||
Sbjct 1078 AGGAGCACCACCACCA-AACTATGGAGGAGGACCACCACCT-AACTACGGAGGAGCACCC 1135
Query 1145 CCACAGAACAACAACTACCAGCAGCAGGGTAGTGGAATGCAGCAGCCACAGTACCAGAAC 1204
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1136 CCACAGAACAACAACTACCAGCAGCAGAGTGGTGGAATGCAGCAGCCACAGTACCAGAAC 1195
Query 1205 AACTACCCACCTAACCGGGATGGCAGTGGCAACCCCTACCAGGGTTAAAGCAGTTGAAGC 1264
|| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 1196 AATTACCCACCTAACCGGGATGGCAGCGGGAACCCCTACCAGGGTTAAAGTAGTTGAAGC 1255
Query 1265 AGTCGTGGGTTTCCTTTTTAATCATGCATTCTGGGCTGTGTATAGATAATTTGAGGAAGA 1324
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 AGTCGTGGGTTTCCTTTTCAATCATGCATTCTGGGCTGTGTATAGATAATTTGAGGAAGA 1315
Query 1325 GAGAGTGCAGTAGCAAGACTTTAAAACTCCTTTT-ATCTCGAGTGTTTATCAGTCTGGGA 1383
||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |
Sbjct 1316 GAGAGTGCAATAGCAAGACTTAAAAACTCCTTTTTATCTCGAGTGTTTATCAGTCTGGTA 1375
Query 1384 TTATGTGAGAGAGA-A-TAGCCTAAGTTACTGTGGCATGGTTAGAACTTTTCACT-CTTG 1440
|||||||||||||| | |||||| ||| ||| ||||||||||||||||||| | | ||||
Sbjct 1376 TTATGTGAGAGAGAGAATAGCCTGAGTAACTCTGGCATGGTTAGAACTTTTTA-TGCTTG 1434
Query 1441 CGTTTCTTTTTAGTAGTTTATATCCTAAATCGATCTCAAGTTCTTCCTTGTGATG 1495
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CGTTTCGTTTTATTAGTTTATATCCTAAATCGATCTCAAGTTCTTCCTTGTGATG 1489
> Ahg887758 jgi|Araly1|887758|Al_scaffold_0975_1
Length=441
Score = 601 bits (325), Expect = 6e-171
Identities = 405/441 (92%), Gaps = 15/441 (3%)
Strand=Plus/Plus
Query 65 ATGGCGACGCATACCATTTCTCGATCCATTCTTTGCCGACCGGCGAAATCTCTTTCGTTT 124
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCGACGCATACCATTTCTCGCTCCATTCTTTGCCGACCGGCGAAATCTCTTTCCCTT 60
Query 125 CTGTTCACGCGATCCTTTGCTTCATCTGCTCCTCTCGCCAAATCTCCGGCG--------- 175
|||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 61 CTGTTCACGCGATCTTTTGCTTCATCTGCTCCTCTCGCCAAAACTCCGGCGTCTTCTCTT 120
Query 176 T---C-T--TCTCTGCTCAGCCGGTCCCGTCCTCTGGTCGCCGCTTTTTCCTCCGTTTTC 229
| | | |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 121 TACACGTCGTCTCTGCTCAGCCGTTCCCGTCCTCTCGTCGCCGCTTTTTCCTCCGTTTTC 180
Query 230 CGTGGCGGCCTTGTGTCTGTCAAAGGTCTCTCGACGCAGGCTACATCGTCTTCTCTGAAC 289
|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||
Sbjct 181 CGTGGCGGCCTTGTGTCTGTTAAAGGTCTCTCAACGCAGGCTACGTCGTCTTCTCTGAAC 240
Query 290 GACCCGAATCCCAACTGGTCGAACAGGCCACCTAAGGAGACGATCCTGCTCGATGGTTGC 349
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GATCCGAACCCCAACTGGTCGAACAGGCCACCTAAGGAGACGATCCTGCTCGATGGATGC 300
Query 350 GATTTCGAGCACTGGCTTGTCGTCGTGGAGCCACCTCAGGGTGAGCCTACTAGAGATGAA 409
||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||| ||
Sbjct 301 GATTTCGAGCACTGGCTTGTCGTCGTGAATCCACCGGAGGGTGATCCTACTAGAGACGAT 360
Query 410 ATCATTGATAGCTACATCAAAACCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGG 469
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATCATTGATAGTTACATCAAAACCCTAGCTCAGATTGTTGGCAGTGAAGACGAAGCTAGG 420
Query 470 ATGAAGATCTACTCGGTTTCA 490
|||||||||||||||||||||
Sbjct 421 ATGAAGATCTACTCGGTTTCA 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58544706565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5