BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15020.1
Length=1404
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478929 jgi|Araly1|478929|fgenesh2_kg.3__1630__AT3G15020.2 1799 0.0
Ahg474449 jgi|Araly1|474449|fgenesh2_kg.1__4403__AT1G53240.1 1022 0.0
> Ahg478929 jgi|Araly1|478929|fgenesh2_kg.3__1630__AT3G15020.2
Length=1199
Score = 1799 bits (974), Expect = 0.0
Identities = 1122/1191 (94%), Gaps = 19/1191 (2%)
Strand=Plus/Plus
Query 58 TTTCCCAACGAAAAATGTTCCGATCAATGATTGTTCGATCTGCTTCCCCAGTGAAGCAGG 117
||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 1 TTTCCCAACCAAAAATGTTCCGATCAATGCTTGTTCGATCCGCTTCCCCAGTGAAGCAGG 60
Query 118 GTCTTCTCCGCAGAGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCG 177
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGCTTCTCCGCAGAGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCG 120
Query 178 GTGCCGCCGGTGGGATCGGCCAGCCACTTtctcttctcatgaagcttaaccctctcgtct 237
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GTGCCGCCGGTGGAATCGGCCAGCCACTTTCTCTCCTCATGAAGCTTAACCCTCTCGTCT 180
Query 238 cttctctctccctctATGATATCGCCAACACTCCCGGCGTTGCTGCTGACGTCGGTCACA 297
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 181 CCTCTCTCTCCCTCTATGATATCGCCAACACTCCCGGCGTTGCCGCTGACGTCGGCCACA 240
Query 298 TCAACACCCGATCTCAGGTTTCTGGGTACATGGGTGATGATGATTTGGGGAAAGCTCTAG 357
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||
Sbjct 241 TCAACACCCGATCTCAGGTATCTGGATACATGGGTGATGATAATTTGGGGAAAGCTCTAG 300
Query 358 AAGGCGCTGACCTCGTCATTATTCCAGCTGGTGTCCCAAGGAAGCCTGGCATGACCCGTG 417
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 301 AAGGAGCTGACCTCGTCATTATTCCAGCTGGTGTCCCGAGGAAGCCTGGCATGACCCGTG 360
Query 418 ATGATCTTTTCAACATCAATGCTGGCATTGTCAAGAACCTCAGCATCGCCATCGCCAAGT 477
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 361 ATGATCTTTTCAACATTAATGCTGGCATTGTCAAGAACCTTAGCATCGCCATCGCCAAGT 420
Query 478 ATTGCCCACAAGCACTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCAATTG 537
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 ACTGCCCTCAAGCGCTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCTATTG 480
Query 538 CAGCTGAGATTTTTAAGAAGGCTGGTACCTATGATGAGAAGAAATTATTCGGTGTCACCA 597
||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||||
Sbjct 481 CAGCTGAGATTTTTAAGAAGGCTGGTACCTACGATGAGAAGAAATTGTTTGGTGTTACCA 540
Query 598 CTCTTGATGTTGTCAGGGCTAGGACTTTCTATGCTGGAAAATCGGATGTCAATGTTGCAG 657
||||||| ||||||||||| | |||||||||||| |||||||| || ||||||||||||
Sbjct 541 CTCTTGACGTTGTCAGGGCCAAGACTTTCTATGCGGGAAAATCAAATCTCAATGTTGCAG 600
Query 658 AGGTTAATGTTCCAGTTGTTGGTGGTCATGCTGGCATCACGATTCTTCCTCTCTTTTCTC 717
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 601 AGGTTAATGTTCCAGTTGTTGGTGGTCATGCTGGTATTACGATTCTTCCTCTCTTTTCTC 660
Query 718 AGGCTAGCCCTCAAGCCAACTTGTCGGATGATTTAATCAGGGCCCTCACAAAGCGTACCC 777
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 AGGCTAGCCCTCAAGCCAACTTGTCGGATGATTTAATCAAGGCCCTCACAAAGCGTACCC 720
Query 778 AGGACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AGGACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAA 780
Query 838 TGGCCTATGCGGGAGCACTCTTTGCTGATGCATGCTTAAAGGGACTCAACGGTGTTCCAA 897
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 781 TGGCCTATGCGGGAGCACTCTTTGCTGATGGATGCTTGAAGGGACTCAACGGTGTTCCAG 840
Query 898 ATGTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAA 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATGTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAA 900
Query 958 AGGTAAGACT-GGGAAAGAACGGAGTGGAGGAAGTGCTAGATCTAGGGCCACTCTCAGAC 1016
|||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 AGGTAAGACTTGGGAA-GAACGGAGTGGAGGAAGTGCTAGATCTTGGGCCACTCTCAGAC 959
Query 1017 TTTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGC 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGA 1019
Query 1077 ATCAAATTTGCCAACCAATGAGTTTTT----GCATCTTGAAACTATTGATTTTGGACTAA 1132
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1020 ATCAAATTTGCCAACCAATGAGTTTTTTTTTGCTTCTTGAAACTATTGATTTTGGACTAA 1079
Query 1133 ACTTTAGGTTAATGTTTGTCTTTCCAATTTTCCGGTAGAGTTGTCTTCTTCCTCTGCGGA 1192
||||| | |||||||| |||| |||||||||||||||||||||||||||
Sbjct 1080 ACTTT---T----------CTTTCCAAATTTCTGGTAGAGTTGTCTTCTTCCTCTGCGGA 1126
Query 1193 TTTTATAATTTCCCTTCAATAAATTCTCCATTTCTGCTCTTGAGGAACCAA 1243
|||| || ||||| ||||||||||||||||||||| || |||||||||
Sbjct 1127 TTTTCGAAAATCCCTAAAATAAATTCTCCATTTCTGCTTTTCAGGAACCAA 1177
> Ahg474449 jgi|Araly1|474449|fgenesh2_kg.1__4403__AT1G53240.1
Length=1422
Score = 1022 bits (553), Expect = 0.0
Identities = 882/1041 (85%), Gaps = 22/1041 (2%)
Strand=Plus/Plus
Query 68 AAAAATGTTCCGATCAATGATTGTTCGATCTGCTTCCCCAGTGAAGCAGG-GTCTTCTCC 126
||| |||||| |||| ||| | || |||||| ||||| | | |||||||| | || |||
Sbjct 72 AAATATGTTCAGATCTATGCTCGTCCGATCTTCTTCCTCTGCGAAGCAGGCG-GTTATCC 130
Query 127 GCAG-AGGATTCGCCTCTGAATCTGTTCCCGATCGCAAAGTCGTCATCCTCGGTGCCGCC 185
|| | | | ||| |||| | || || ||||| || ||||||| ||||||||||||||||
Sbjct 131 GCCGTA-GCTTCTCCTCCGGTTCCGTCCCCGAGCGTAAAGTCGCCATCCTCGGTGCCGCC 189
Query 186 GGTGGGATCGGCCAGCCACTTtctcttctcatgaagcttaaccctctcgtctcttctctc 245
||||| || || ||||| ||| |||| |||||||||||||| ||||| ||||||||||||
Sbjct 190 GGTGGAATTGGTCAGCCTCTTGCTCTCCTCATGAAGCTTAATCCTCTTGTCTCTTCTCTC 249
Query 246 tccctctATGATATCGCCAACACTCCCGGCGTTGCTGCTGACGTCGGTCACATCAACACC 305
|||||||| |||||||| |||||||| || ||||| ||||| ||||||||||||||||||
Sbjct 250 TCCCTCTACGATATCGCTAACACTCCTGGAGTTGCCGCTGATGTCGGTCACATCAACACC 309
Query 306 CGATCTCAGGTT-TCTGGGTACATGGGTGATGATGATTTGGGGAAAGCTCTAGAAGGCGC 364
||||| ||||| | ||| |||||||| |||||| | |||| |||||||| ||||| ||
Sbjct 310 AGATCTGAGGTTGT-TGGATACATGGGCGATGATAACTTGGCCAAAGCTCTTGAAGGAGC 368
Query 365 TGACCTCGTCATTATTCCAGCTGGTGTCCCAAGGAAGCCTGGCATGACCCGTGATGATCT 424
||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 369 TGATCTCGTTATTATTCCAGCTGGTGTACCAAGGAAGCCTGGTATGACCCGTGACGATCT 428
Query 425 TTTCAACATCAATGCTGGCATTGTCAAGAACCTCAGCATC-GCCATCGCCAAGTATTGCC 483
||||||||| || ||||| |||||||||||||| ||| | |||||||||||||| ||||
Sbjct 429 TTTCAACATTAACGCTGGAATTGTCAAGAACCTTTGCA-CTGCCATCGCCAAGTACTGCC 487
Query 484 CACAAGCACTTGTCAACATGATCAGCAACCCTGTGAACTCCACTGTTCCAATTGCAGCTG 543
|||| |||||| | |||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 488 CACATGCACTTATTAACATGATCAGCAACCCTGTGAACTCTACTGTTCCAATCGCAGCTG 547
Query 544 AGATTTTTAAGAAGGCTGGTACCTATGATGAGAAGAAATTATTCGGTGTCACCACTCTTG 603
|||| || ||||||||||||| || |||| |||||||| || ||||| ||||||||||
Sbjct 548 AGATATTCAAGAAGGCTGGTATGTACAATGAAAAGAAATTGTTTGGTGTTACCACTCTTG 607
Query 604 ATGTTGTCAGGGCTAGGACTTTCTATGCTGGAAAATCGGATGT-CAATGTTGCAGAGGTT 662
| ||||||||||| | |||||||||||| ||||| | |||| | | |||||||| |||
Sbjct 608 ACGTTGTCAGGGCCAAGACTTTCTATGCGGGAAAGGCCAATGTCCCA-GTTGCAGAAGTT 666
Query 663 AATGTTCCAGTTG-TTGGTGGTCATGCTGGCATCACGATTCTTCCTCTCTTTTCTCAGGC 721
|||||||| | || |||||||||||||||| | || ||||| |||||||| ||||||||
Sbjct 667 AATGTTCC-GGTGATTGGTGGTCATGCTGGGGTTACTATTCTCCCTCTCTTCTCTCAGGC 725
Query 722 TAGC-CCTCAAGCCAACTTGTCGGA-TGATTTAATCAGGGCCCTCACAAAGCGTACCCAG 779
| | ||||||||||| ||||| | ||| || ||| |||||||| |||||||||||
Sbjct 726 CA-CTCCTCAAGCCAATTTGTC-AAGTGACGTACTCACTGCCCTCACTAAGCGTACCCAA 783
Query 780 GACGGAGGGACAGAAGTCGTGGAGGCAAAAGCTGGAAAGGGTTCAGCTACATTGTCAATG 839
|| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 784 GATGGAGGTACAGAAGTCGTGGAGGCAAAAGCTGGAAAAGGTTCAGCTACATTGTCAATG 843
Query 840 GCCTATGCGGGAGCACTCTTTGCTGATGCATGCTT-AAAGGGACTCAACGGTGTTCCAAA 898
|||||||| |||||| | || |||||||| ||||| ||||| |||||||||||||||| |
Sbjct 844 GCCTATGCTGGAGCATTATTCGCTGATGCGTGCTTGAAAGG-ACTCAACGGTGTTCCAGA 902
Query 899 TGTGGTGGAATGCTCATTCGTCCAATCTACCATCACCGAGCTTCCTTTCTTCGCCTCAAA 958
||| | |||||||||| ||| ||||| || |||||||||||||||||||| ||||| ||
Sbjct 903 TGTCATAGAATGCTCATACGTGCAATCAACAATCACCGAGCTTCCTTTCTTTGCCTCGAA 962
Query 959 GGTAAGACTGGGAAAGAACGGAGTGGAGGAAGTGCTAGATCTAGGG-CCACTCTCAGACT 1017
||| || |||| |||||||| |||||||| || || || || ||| |||||||||||||
Sbjct 963 GGTGAGGTTGGGGAAGAACGGCGTGGAGGAGGTTCTTGA-CTTGGGGCCACTCTCAGACT 1021
Query 1018 TTGAAAAGGAAGGCTTAGAAGCCCTCAAGGCAGAACTCAAATCCTCTATCGAGAAGGGCA 1077
|||| ||||||||||| ||||| | ||| |||||||||||||||| ||||| ||||| |
Sbjct 1022 TTGAGAAGGAAGGCTTGGAAGCATTGAAGCCAGAACTCAAATCCTCCATCGAAAAGGG-A 1080
Query 1078 -TCAAATTTGCCAACCAATGA 1097
|||| ||||||||||| |||
Sbjct 1081 GTCAAGTTTGCCAACCAGTGA 1101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52488357610
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5