BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15030.1
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929286 jgi|Araly1|929286|scaffold_301743.1 1962 0.0
Ahg474447 jgi|Araly1|474447|fgenesh2_kg.1__4401__AT1G53230.1 115 1e-24
> Ahg929286 jgi|Araly1|929286|scaffold_301743.1
Length=1402
Score = 1962 bits (1062), Expect = 0.0
Identities = 1288/1389 (93%), Gaps = 47/1389 (3%)
Strand=Plus/Plus
Query 408 TACTCTGGATTCCTCACCCTCTAACGACGACCACCGTcgccgccgccgccg---c--c-- 460
|||||||||||||||||| ||| |||||||||||||||||||||||||||| | |
Sbjct 29 TACTCTGGATTCCTCACCGTCTTACGACGACCACCGTCGCCGCCGCCGCCGTCTCGACGA 88
Query 461 -gTCTC-GA-----C-GAATATGCTCTACCAATGTCTGACGACCAATTCCATCACCCGCC 512
| | | || | ||||||||| ||||||| |||||||||||| || |||||||||
Sbjct 89 AGACGCTGACCTTCCTCAATATGCTCAACCAATGGCTGACGACCAATACCTTCACCCGCC 148
Query 513 GCCTCCTTCTTCAATGAGGCACCGTTCTACGTCGGATGCGGCGGACGGCGGCTGCGGCGA 572
||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||
Sbjct 149 GCCTCCTTCTTCAATGAGGCACCGTGCTACGTTGGAGGCGGCGGACGGCGGCTGCGGCGA 208
Query 573 GATTGTTGAGGTGCAAGGTGGTCACATTGTTCGGTCTACCGGAAGAAAAGACCGCCACAG 632
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 209 GATCGTTGAGGTGCAAGGTGGTCACATTGTTCGGTCTACCGGAAGAAAAGATCGCCACAG 268
Query 633 CAAAGTCTGCACGGCTAAAGGGCCACGTGACCGGCGCGTGAGACTCTCTGCTCACACGGC 692
||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 269 CAAAGTCTGCACGGCCAAAGGACCACGTGACCGGCGCGTGAGGCTCTCTGCTCACACGGC 328
Query 693 GATTCAGTTTTACGATGTTCAAGACAGGCTTGGTTTCGACCGACCTAGCAAAGCCGTTGA 752
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 329 GATTCAGTTCTACGATGTTCAAGACAGGCTTGGTTTCGACCGCCCTAGCAAAGCCGTTGA 388
Query 753 TTGGCTTATCAAAAAGGCTAAGACTTCCATTGACGAGCTCGCTGAGCTTCCTCCCTGGAA 812
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 389 TTGGCTTATCAAAAAGGCTAAGTCTTCCATTGACGAGCTCGCTGAGCTTCCTCCCTGGAA 448
Query 813 TCCCGCCGATGCAATTCGCCTAGCCGCTGCTAACGCTAAACCCAGAAGAACCACCGCCAA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 TCCCGCCGATGCAATTCGCCTAGCCGCTGCTAACGCTAAACCCAGAAGAACCACCGCCAA 508
Query 873 AACCCAAATCTCTCCGTCTCCGCCACCGCCGcaacagcaacaacaacaacaacaGCTTCA 932
|||||||||||| ||||| || || | ||||||||||||||||||||| |||||||||||
Sbjct 509 AACCCAAATCTCGCCGTCGCC-CC-C-GCCGCAACAGCAACAACAACAGCAACAGCTTCA 565
Query 933 GTTCGGTGTTGGCTTCAACGGAGGAGGAGCAGAGCATCCGAGTAACAACGAGTCGAGTTT 992
|||||||| ||| ||| || |||||||||||||||||||||||||| ||||| |||||
Sbjct 566 GTTCGGTGCTGGATTCGACAGAGGAGGAGCAGAGCATCCGAGTAAC---GAGTCCAGTTT 622
Query 993 TCTCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAAGTCGTTTTTTCCGGT 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TCTCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAAGTCGTTTTTTCCGGT 682
Query 1053 GATTGGCTCTTCAACGGAGGCTCCTTCGAATCATAACCTTATGCACAACTATCATCATCA 1112
| |||| |||||||||||||||||| | |||||| | |||||||| || ||||| |||||
Sbjct 683 GGTTGGTTCTTCAACGGAGGCTCCTCCAAATCATCAGCTTATGCATAATTATCACCATCA 742
Query 1113 GCATCCGCCGGATTTGCTTTCTCGAACTAATAGCCAAAACCAAGATCTCCGTCTCTCGCT 1172
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 ---TCCGCCGGATTTGCTTTCTCGAACTAATAGCCAAAACCAAGATCTCCGTCTCTCGCT 799
Query 1173 GCAATCGTTCCCGGATGGTCCACCGTCGCTTCTGCACCACCAAC-ATCACCACCACACCT 1231
||||||||||||||||||||||||||||||||| |||||| ||| | || ||||||||||
Sbjct 800 GCAATCGTTCCCGGATGGTCCACCGTCGCTTCTCCACCAC-AACCACCATCACCACACCT 858
Query 1232 CTGCTTCCGCCTCCGAGCCTACTCTGTTCTACGGACAGAGCAATCCGTTAGGGTTTGACA 1291
|||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||
Sbjct 859 CTGCTTCCGCCTCCGAGCCTGTTCTCTTCTACGGGCAGAGCAATCCGTTAGGGTTTGACA 918
Query 1292 CATCGA-----GT---T-GGGAGCAGCAGTCGTCGGAATTCGGAAGGATTCAGAGACTAG 1342
|||||| || | |||||||||||||||||||||||||||||||||||||||| |
Sbjct 919 CATCGAATTCTGTGAGTTGGGAGCAGCAGTCGTCGGAATTCGGAAGGATTCAGAGACTGG 978
Query 1343 TGGCTTGGAACAGCGGCGGTGGCGGCGGAGCAACCGATACAGGAAACGGAGGAGGGTTTC 1402
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 979 TGGCTTGGAACAGCGGCGGTGGCGG---AGCAGCCGATACAGGAAACGGAGGAGGGTTTC 1035
Query 1403 TGTTCGCTCCTCCTACTCCTTCAACGACGTCGTTTCAGCCAGTTCTTGGCCAAAGCCAAC 1462
|||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 TGTTCGCTCCTCCT-C-C-TTCAACGACGTCGTTTCAGCCAGTTCTTGGCCAAAGCCAAC 1092
Query 1463 AGCTTTATTCTCAGAGGGGTCCCCTTCAGTCCAGTTACAGTCCCATGATCCGTGCTTGGT 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AGCTTTATTCTCAGAGGGGTCCCCTTCAGTCCAGTTACAGTCCCATGATCCGTGCTTGGT 1152
Query 1523 TTGATCctcaccatcatcaccaatccatctccaccgacgatctcaaccaccacca----- 1577
||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1153 TTGATCCTCACCACCATCATCAATCCATCTCCACCGACGATATCAACCACCACCACCACC 1212
Query 1578 -tcaccttcctccaccGGTTCACCAATCAGCAATCCCCGGAATCGGATTCGCCTCAGGTG 1636
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1213 ATCACCTTCCTCCGCCGGTTCACCAATCAGCAATCCCCGGAATTGGATTCGCCTCAGGTG 1272
Query 1637 AATTCTCTTCGGGTTTTCGCATACCAGCACGGTTTCAGGGCCAAGAAGAGGAGCAGCACG 1696
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1273 AATTCTCTTCCGGTTTTCGCATACCAGCACGGTTTCAGGGCCAAGAAGAGGAACAGCACG 1332
Query 1697 ACGGTCTCACTCACAAGCCGTCCTCTGCTTCCTCTATTTCTCGCCATTGACAATCGAAAC 1756
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ACGGTCTCACCCACAAGCCGTCCTCTGCTTCCTCTATTTCTCGCCATTGACAATCGAAAC 1392
Query 1757 TAATCCTCT 1765
|||||||||
Sbjct 1393 TAATCCTCT 1401
> Ahg474447 jgi|Araly1|474447|fgenesh2_kg.1__4401__AT1G53230.1
Length=1604
Score = 115 bits (62), Expect = 1e-24
Identities = 71/75 (95%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 979 AACGAGTCGAGTTTTC-TCCCGCCGTCAATGGATTCAGATTCGATAGCTGACACTATAAA 1037
||||| |||||||||| ||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 599 AACGAATCGAGTTTTCTTCCCG-CGTCAATGGATTCTGATTCGATAGCTGACACTATAAA 657
Query 1038 GTCGTTTTTTCCGGT 1052
|||||||||||||||
Sbjct 658 GTCGTTTTTTCCGGT 672
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83151004835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5