BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15040.1
Length=1667
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929287 jgi|Araly1|929287|scaffold_301744.1 1171 0.0
> Ahg929287 jgi|Araly1|929287|scaffold_301744.1
Length=772
Score = 1171 bits (634), Expect = 0.0
Identities = 721/762 (95%), Gaps = 9/762 (1%)
Strand=Plus/Plus
Query 180 GtttttttAGCAACAATGAATAAAAATCCACGGCTCGATTTTTCCTCACCGTCGTCGTTA 239
|||| |||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 9 GTTTCTTTAACAACAATGAACAAAAATCCACGAATCGATTTTTCCTCACCGTCGTCGTTA 68
Query 240 GCCACTATCTCCGACTCTGCAGACGGTGAGCTGAATGAAGACGACATCTTTGCAATCGAC 299
||||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 69 GCCACCGTCTCTGACTCTGCAGATGGCGAGCTGAATGAAGACGACATCTTTGCAATCGAC 128
Query 300 ATATCTCACGCGCCGCCTCAAGCTCGTCATTCTCCTGTATCATCTCCGGCGAAGCAACAA 359
|||||||| |||||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 129 ATATCTCATGCGCCG-CT-----TCGTCATTCTCCGGTATCATCTCCGGCGAAGCAACAA 182
Query 360 ACTCCTGCTCGTCAGCTTCAGAGGAGCAAAAGCGGTTTGAAGAATGTGGAAGCGTCTGGT 419
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 183 ACTCCTGCTCGCCAGCTTCAGAGGAGCAAAAGCGGTTTGAAGAACGTGGAAGCTTCTGGT 242
Query 420 ATCCTCGCGGCTCTTCCTGAATCATCTGGGAGTAGTAGTTACTTAAGTCATGTCTTTCAC 479
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 243 ATCCTCGCGGCTCTTCCTGAATCCTCTGGAAATAGTAGTTACTTAAGTCATGTCTTTCAC 302
Query 480 CACAAACCTGCGGCTGCTCTCTCTACTTCTGTCTCCTCCACAGCTTCTTCATCGTCTTCT 539
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 303 CACAAACCTGCGGCTGCTCTCTCCACTTCTGTCTCCTCTACAGCTTCTTCATCGTCTTCT 362
Query 540 TCAGGTGGTGGTGCATCAGCTGGTTCTTCGTCTTCAGCTCGAGCTATCCCGACCGCGCCT 599
|| ||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 363 TCGGGTGGTGGTGCATCAGCTGCTTCTTCGTCTTCCGCTCGAGCTATCCCAACCGCGCCT 422
Query 600 AAACCGCCTCAAGAGAGGCTTCCGTTTTCAGCTTCTTTTGTAGGTGGTGGGAAGTATCCT 659
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 423 AAACCGCCTCAAGAAAGGCTTCCGTTTTCAGCTTCTTTTATAGGTGGTGGGAAGTATCCT 482
Query 660 CAATCAGCTCCGGTTCAAGTGCCGTTAGTGTCGTCTGCGATGATGAATCGTCATAAGAAG 719
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 483 CAGTCAGCTCCGGTTCAAGTGCCGTTAGTATCGTCTGCGATGATGAATCGTCATAAGAAG 542
Query 720 GAATTCAAGCTGACTGATGTGGTGGATGATGAT---GAGGAAGAAGAGGAAGGCGAAATG 776
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 543 GAATTCAAGCTGACTGATGTGGTGGATGATGATGAGGAGGAAGAAGAGGAAGGCGAAATG 602
Query 777 CTTCCGCCTCACGAGATTGTAGCTCGGTCTTTGGCTCAGTCGTCGTTGTTATCTTGCTCT 836
||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 603 CTTCCACCTCACGAGATTGTAGCTCGGTCTTTGGCTCAGTCTTCGTTGCTATCTTGCTCT 662
Query 837 GTGCTTGAAGGAGCAGGAAGGACACTTAAAGGGAGAGATCTCCGGCAGGTAAGGAATGCT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 GTGCTTGAAGGAGCAGGAAGGACACTTAAAGGGAGAGATCTCCGGCAGGTAAGGAATGCT 722
Query 897 GTTTTCAGAAGAACCGGTTTCATAGATTGAGTGttttttttt 938
|||||||||||||||||||||||||||||||||| |||||||
Sbjct 723 GTTTTCAGAAGAACCGGTTTCATAGATTGAGTGTGTTTTTTT 764
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62506092045
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5