BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15050.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478934 jgi|Araly1|478934|fgenesh2_kg.3__1635__AT3G15050.1 1227 0.0
> Ahg478934 jgi|Araly1|478934|fgenesh2_kg.3__1635__AT3G15050.1
Length=787
Score = 1227 bits (664), Expect = 0.0
Identities = 751/792 (95%), Gaps = 10/792 (1%)
Strand=Plus/Plus
Query 60 TCTTCTGTTATGGGATCTGGATGGCTGCTCCGCTCAATCATCTGTCTAAACGGAACAAAG 119
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 TCTTCTGTCATGGGATCTGGATGGCTGCTCCGTTCTATCATCTGTCTAAACGGAACAAAG 60
Query 120 AAGAACAAATCAAATCGAGGCAACGTACATTCTGAAACATCAAACCGTGTCAAACCGGTT 179
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AAGAACAAATCAAATGGAGGCAACGTACTTTCTGAAACATCAAACCGTGTCAAACCGGTT 120
Query 180 GAATCAAGCTCTGCTGCTTCTACTAAGCTTACCGTAGAAGTCGCTGTTATTCGCATTCAA 239
|||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 121 GAATCAAG--CT-CTGCTTCCACTAAGCTTACCGCAGAAGTCGCTGTTATTCGCATTCAA 177
Query 240 AAGGCTTTTCGAGCATTCAAGGCGAGAAAAAGACTATGCAGCTTGAAGAGTGCGAGGAGA 299
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 178 AAGGCTTTTCGAGCATTCAAGGCCAGAAAAAGACTATGCAGCTTGAAGAGCGCGAGGAGA 237
Query 300 TTTAACT-CGCTGATCCAAGGCCATACAGTGATGAACCAAACCTCGACTGCACTCAATGT 358
||||| | |||||||||||||||||||||||| ||| ||||| |||||||||||||||||
Sbjct 238 TTTAA-TGCGCTGATCCAAGGCCATACAGTGAAGAATCAAACTTCGACTGCACTCAATGT 296
Query 359 GATTCATTCTTGGTACGATATACAGAATCAGATCAGAGCACGACGTTTGTATATGGTGAC 418
|||||||||||||| ||||||||||| |||| |||| ||| |||||||||||||||||||
Sbjct 297 GATTCATTCTTGGTGCGATATACAGAGTCAGGTCAGGGCAAGACGTTTGTATATGGTGAC 356
Query 419 ACAAGGTAGACTCCAACACAAAAGATTGGAGAATC-GTTTGAAGCTGGAGATCAAACTTC 477
||||||||||||||| |||||||||||||| |||| | ||||||||||||||||| ||||
Sbjct 357 ACAAGGTAGACTCCAGCACAAAAGATTGGACAATCAG-TTGAAGCTGGAGATCAAGCTTC 415
Query 478 ACGAGCTAGAAGTTGAATGGTGTGGAGGCTCTGAAACAATGGAGGAGATTCTCGCAAAGA 537
||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 416 ACGAGCTAGAAGTGGAATGGTGTGGAGGTTCTGAAACAATGGAAGAGATTCTAGCAAAGA 475
Query 538 TACAACAGAAAGAAGAAGCTACGGTTAAGCGTGAAAGAGCAATGGCTTATGCTTTCTCTC 597
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 476 TACAACAGAGAGAAGAAGCTACGGTGAAGCGTGAAAGAGCAATGGCTTATGCTTTCTCTC 535
Query 598 ATCAGTGGAGGGCTAATGCTACACAGTATCTAGGTCAAGCTTCGTTTAACCTTGGCAAAG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 ATCAGTGGAGGGCTAATGCTACACAGTATCTAGGTCAAGCTTCGTTTAACCTTGGCAAAG 595
Query 658 AAAGCTGGGGATGGAGTTGGAAAGAACGGTGGATTGCGGCTCGACCTTGGGAGATTAGGG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AAAGCTGGGGATGGAGTTGGAAAGAACGGTGGATTGCGGCTCGACCTTGGGAGATTAGGG 655
Query 718 CTCAATGCTACGTC-GT--TAAACCGATCAAACCATCTAAGAAACCGGAGAAATCATCAC 774
|||||||||||||| || |||||||||||||||| |||| |||||||||||||||||||
Sbjct 656 CTCAATGCTACGTCAGTAATAAACCGATCAAACCAGCTAAAAAACCGGAGAAATCATCAC 715
Query 775 CCAATAATGTGATCACAAAAACCTCTGCTAAACCGGATGAAGTTGGTAACTCGAAAAAGC 834
||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 716 CCAATAATGTGATCATAAAGACCTCTGCTAAACCGGATGAAGTTGGAAACTCGAAAAAGC 775
Query 835 CTGGTTCCGGAT 846
||||||||||||
Sbjct 776 CTGGTTCCGGAT 787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5