BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15060.1
Length=902
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478935 jgi|Araly1|478935|fgenesh2_kg.3__1636__AT3G15060.1 1349 0.0
Ahg950838 jgi|Araly1|950838|scaffold_802725.1 691 0.0
Ahg919355 jgi|Araly1|919355|scaffold_100636.1 276 2e-73
Ahg476500 jgi|Araly1|476500|fgenesh2_kg.2__1630__AT1G73640.1 106 3e-22
> Ahg478935 jgi|Araly1|478935|fgenesh2_kg.3__1636__AT3G15060.1
Length=862
Score = 1349 bits (730), Expect = 0.0
Identities = 823/866 (95%), Gaps = 14/866 (2%)
Strand=Plus/Plus
Query 1 TTCTTGTGCGGCGTTTCTTTTTCTCCTTTTGTCCGTACGCGTTTTCTTACCGGTGACCTG 60
||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||
Sbjct 1 TTCTTGTGCGGCGTTTCTTCTTCTCCGTTTGTCCGTACGCGTTTTTTTACCGGTGACCTG 60
Query 61 AAAGTCT-C-A-----AAAAATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCT 113
||| ||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAACTCTCCGATTCTCGAAAATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCT 120
Query 114 ACAAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCA 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCA 180
Query 174 CGCGCAACGAGTTCAGCCTCGAGTCTAAATCCACCATCGGTGTCGAATTCGCCACCCGAA 233
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 CGCGCAACGAGTTCAGCCTCGAGTCTAAATCCACCATCGGCGTCGAATTCGCCACCCGAA 240
Query 234 GCATTCATGTCGATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAGA 293
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GCATTCATGTCGATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGTCAAGAGA 300
Query 294 GATACCGAGCAATCACAAGCGCATACTATCGAGGAGCTGTTGGGGCTTTGCTTGTTTATG 353
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 301 GATACCGAGCAATCACAAGCGCTTACTATCGAGGAGCTGTAGGAGCTTTGCTTGTTTATG 360
Query 354 ATGTTACACGGCATGTGACATTTGAGAACGTTGAGAGATGGTTGAAGGAGCTTAGAGACC 413
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 361 ATGTTACTCGGCATGTGACATTTGAGAACGTTGAGAGATGGTTGAAGGAGCTCAGAGATC 420
Query 414 ACACAGAGGCCAACATTGTGATCATGCTTGTTGGGAATAAAGCGGATCTACGTCACCTAA 473
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 ACACAGAGGCCAACATTGTGATCATGCTTGTTGGGAATAAGGCGGATCTACGTCACCTAA 480
Query 474 GAGCTGTTTCAACTGAAGATGCTAAAGCCTTTGCAGAGAGAGAGAACACATTCTTTATGG 533
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 GAGCTGTTTCAACCGAAGATGCTAAAGCCTTTGCAGAGAGAGAGAACACATTCTTCATGG 540
Query 534 AGACATCTGCACTTGAAGCTTTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAA 593
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AGACATCTGCACTCGAAGCATTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAA 600
Query 594 TATACCGTGTTGCAAGCAAGAAGGCGTTGGATATTGGTGATGATCACA-CTACTCTTCCT 652
|||||||||| |||||||||||||| ||||||||||||||||||| | |||| ||||||
Sbjct 601 TATACCGTGTGGCAAGCAAGAAGGCCTTGGATATTGGTGATGATC-CGGCTACCCTTCCT 659
Query 653 AAAGGACAAAGTATTAATGTTGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGA 712
||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAGGCCAGAGTATTAATGTCGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGT 719
Query 713 TGCTGCTCAAGTTGATCTTGATCAAGCCATTTTGTCTGTTTCTTAGGCAAGAATATAGTT 772
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 720 TGCTGCTCAAGTTGATCTTGATCAAGCCATTTTGTCTGTTTCTTAGGTAAGAATATAGTT 779
Query 773 TGATTATCTATGGAAGA-CATGCAGATGATTCTTTCT-TGTGTTTTTCCTTTAGTTGCTT 830
|| |||||||||||||| | ||||||||||||| || ||||||||||||||||||||||
Sbjct 780 TGGTTATCTATGGAAGATC--GCAGATGATTCTT-CTGTGTGTTTTTCCTTTAGTTGCTT 836
Query 831 CTTTTGGTGTAAGTTTCTCAGATCCT 856
|||||||||||||||||||| |||||
Sbjct 837 CTTTTGGTGTAAGTTTCTCATATCCT 862
> Ahg950838 jgi|Araly1|950838|scaffold_802725.1
Length=694
Score = 691 bits (374), Expect = 0.0
Identities = 564/658 (86%), Gaps = 4/658 (1%)
Strand=Plus/Plus
Query 73 AATGGCGGCGTATAGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGG 132
||||||||| |||||||| ||||| || ||||||| ||||| |||||| || ||||| ||
Sbjct 20 AATGGCGGCATATAGAGCCGACGAAGACTACGATTACCTCTTCAAGGTTGTGTTAATTGG 79
Query 133 TGATTCCGGCGTCGGTAAATCCAATCTGCTTTCTCGATTCACGCGCAACGAGTTCAGCCT 192
|||||||| ||||| |||||||| || ||||||||||||||||| ||||||||||| ||
Sbjct 80 AGATTCCGGTGTCGGAAAATCCAACCTCCTTTCTCGATTCACGCGAAACGAGTTCAGTCT 139
Query 193 CGAGTCTAAATCCACCATCGGTGTCGAATTCGCCACCCGAAGCATTCATGTCGATGAAAA 252
||| ||||||||||| |||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 140 CGAATCTAAATCCACGATCGGTGTCGAATTCGCCACTCGTAGCATCCATGTCGATGATAA 199
Query 253 AATCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAAGAGAGATACCGAGCAATCACAAG 312
|||||||| || ||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 200 GATCGTCAAAGCCCAGATTTGGGATACCGCCGGCCAAGAGAGATATCGAGCAATCACAAG 259
Query 313 CGCATACTATC-GAGGAGCTGTTGGGGCTTTGCTTGTTTATGATGTTACACGGCATGTGA 371
|||||||| | |||||||||| || || |||||||| || ||||| ||| | |||||||
Sbjct 260 TGCATACTA-CAGAGGAGCTGTAGGAGCATTGCTTGTGTACGATGTCACAAGACATGTGA 318
Query 372 CATTTGAGAACGTTGAGAGATGGTTGAAGGAGCTTAGAGACCACACAGAGGCCAACATTG 431
||||||||||| ||||||||||||| ||||||||| |||| || ||||| |||||||||
Sbjct 319 CATTTGAGAACCTTGAGAGATGGTTAAAGGAGCTTCGAGATCATACAGATTCCAACATTG 378
Query 432 TGATCATGCTTGTTGGGAATAAAGCGGATCTACGTCACCTAAGAGCTGTTTCAACTGAAG 491
| |||||| |||| ||||| ||||| ||||| ||||||||| |||||||||| |||||||
Sbjct 379 TCATCATGTTTGTCGGGAACAAAGCCGATCTCCGTCACCTACGAGCTGTTTCCACTGAAG 438
Query 492 ATGCTAAAGCCTTTGCAGAGAGAGAGAACACATTCTTTATGGAGACATCTGCACTTGAAG 551
| ||||| || ||||| |||||||||||||| ||||| |||||||||||||| || |||
Sbjct 439 ACGCTAAGGCTTTTGCGGAGAGAGAGAACACTTTCTTCATGGAGACATCTGCTCTCGAAT 498
Query 552 CTTTGAACGTTGAGAATGCTTTCACTGAAGTGCTTTCTCAAATATACCGTGTTGCAAGCA 611
| ||||||| ||||||||||||||||||||||||||||| || |||||||| | |||
Sbjct 499 CCATGAACGTCGAGAATGCTTTCACTGAAGTGCTTTCTCAGATTTACCGTGTGGTTAGCC 558
Query 612 AGAAGGCGTTGGATATTGGTGATGATCACA-CTACTCTTCCTAAAGGACAAAGTATTAAT 670
||| ||||||||||| || ||||| | | || ||||||| |||||||| | || ||
Sbjct 559 GGAAAGCGTTGGATATAGGAGATGACC-CGGCTGCTCTTCCCAAAGGACAGACCATCAAC 617
Query 671 GTTGGGTCTAAGGATGATGTTTCTGAGGTTAAGAAGGTTGGATGCTGCTCAAGTTGAT 728
||||||||||| || ||||| |||| ||||| |||||||| |||||||||| |||||
Sbjct 618 GTTGGGTCTAAAGACGATGTCTCTGCCGTTAAAAAGGTTGGTTGCTGCTCAAATTGAT 675
> Ahg919355 jgi|Araly1|919355|scaffold_100636.1
Length=700
Score = 276 bits (149), Expect = 2e-73
Identities = 398/517 (77%), Gaps = 22/517 (4%)
Strand=Plus/Plus
Query 86 AGAGCTGACGATGATTACGATTTCCTCTACAAGGTGGTATTAATCGGTGATTCCGGCGTC 145
||||| || || || ||||||| ||||| |||| |||| || ||||| || || || |||
Sbjct 33 AGAGCCGATGAAGAGTACGATTACCTCTTCAAGCTGGTGTTGATCGGCGACTCTGGTGTC 92
Query 146 GGTAAATCCAATCTGCTTTCTCGATTCA-CGCGCAACGAGTTCAGCCTCGAGTCTAAATC 204
|| ||||| |||||||| ||| | |||| | | |||||||||| ||||| || || ||
Sbjct 93 GGCAAATCGAATCTGCTGTCTAGGTTCACCAAG-AACGAGTTCAATCTCGAATCCAAGTC 151
Query 205 CACCATCGGTGTCGAATTCGCCACCCGAAGC-ATTCATGTCGATGAAAAAATCGTCAAGG 263
|| || ||||| || ||||| | || || | | | | ||||| | ||| ||||||| |
Sbjct 152 TACGATTGGTGTTGAGTTCGCTA-CCAAAACTACTAAAGTCGAAGGCAAAGTCGTCAAAG 210
Query 264 CTCAGATTTGGGACACCGCCGGCCAAGAGAGATACCGAGCAATCACAAGCGCATACTATC 323
| ||||||||||| || || || ||||||||||||||||||||||||||||| ||||| |
Sbjct 211 CCCAGATTTGGGATACTGCTGGTCAAGAGAGATACCGAGCAATCACAAGCGCTTACTA-C 269
Query 324 -GAGGAGCTGTTGGGGCTTTGCTTGTTTATGATGTTACACGGCATGTGACATTTGAGAAC 382
||||||| || || ||||||||| ||||||| || ||| |||| | ||||||||||||
Sbjct 270 AGAGGAGCCGTAGGTGCTTTGCTTATTTATGACGTAACAAGGCACGCGACATTTGAGAAT 329
Query 383 GTTG-AGAGATGGTTGAAGG-AGCTTAGAG-ACCACACAGAGGCCAA-CATTGTGATCAT 438
| | | |||||||| |||| | || |||| || ||||||| |||| ||| ||| | ||
Sbjct 330 GCCGCA-AGATGGTT-AAGGGAACTAAGAGGAC-ACACAGAC-CCAAACATAGTGGTGAT 385
Query 439 GCTTGTTGGGAATAA-AGCGGATCTACGTCACCTAAGAG-CTGTTTCAACTGAAGATGCT 496
|||| | ||||| || |||| || | || ||| || | | | || ||| ||||| |||
Sbjct 386 GCTTATAGGGAACAAGAGCG-ATTTGCGCCACTTA-GTGGCAGTCAAAACAGAAGAGGCT 443
Query 497 AAAGCCTTTGCAGAGAGAGAGAACACATTCTTT-ATGGAGACATCTGCACTTGAAGCTTT 555
||||||||||| |||||||| | | | || ||| ||||||||||| || ||||| ||
Sbjct 444 AAAGCCTTTGCTGAGAGAGA-ATCTCTTTATTTCATGGAGACATCAGCTCTTGACGCAAC 502
Query 556 GAACGTTGAGAAT-GCTTTCACTGAAGTGCTTTCTCA 591
|| ||||| || || ||||| ||||| || |||||
Sbjct 503 CAATGTTGA-AAGCGCATTCACAGAAGTACTCTCTCA 538
> Ahg476500 jgi|Araly1|476500|fgenesh2_kg.2__1630__AT1G73640.1
Length=850
Score = 106 bits (57), Expect = 3e-22
Identities = 168/221 (76%), Gaps = 10/221 (5%)
Strand=Plus/Plus
Query 115 CAAGGTGGTATTAATCGGTGATTCCGGCGTCGGTAAATCCAATCTGCTT-TCTCGATTCA 173
||||| ||| || ||||| || || | |||||| ||||| || || ||| ||| ||||
Sbjct 82 CAAGGCGGTGTTGATCGGAGACTCAGCCGTCGGGAAATCAAACCT-CTTGTCTAGATTTT 140
Query 174 CGCGCA-ACGAGTTCAGCCTCGAGTCTAAATCC-ACCATCGGTGTCGAATTCGC-CACCC 230
| | |||||||| | | || |||||| || |||||||| || || || || |||
Sbjct 141 C-TAAAGACGAGTTCCGGTTTGACTCTAAA-CCAACCATCGGAGTTGAGTTTGCTTACCG 198
Query 231 GAAGCATTCATGTC-GATGAAAAAATCGTCAAGGCTCAGATTTGGGACACCGCCGGCCAA 289
||| |||| ||| || || |||||| ||||||||||||||||||||||||||||||||
Sbjct 199 GAA-TGTTCACGTCGGA-GATAAAATCATCAAGGCTCAGATTTGGGACACCGCCGGCCAA 256
Query 290 GAGAGATACCGAGCAATCACAAGCGCATACTATCGAGGAGC 330
|| |||| | ||||| ||||| | ||||| || |||||
Sbjct 257 GAAAGATTTAGGGCAATTACAAGTTCGTACTACCGTGGAGC 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33433798209
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5