BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15070.1
Length=1965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478936 jgi|Araly1|478936|fgenesh2_kg.3__1637__AT3G15070.1 2603 0.0
Ahg314643 jgi|Araly1|314643|fgenesh1_pm.C_scaffold_1003423 217 3e-55
> Ahg478936 jgi|Araly1|478936|fgenesh2_kg.3__1637__AT3G15070.1
Length=1824
Score = 2603 bits (1409), Expect = 0.0
Identities = 1641/1751 (94%), Gaps = 24/1751 (1%)
Strand=Plus/Plus
Query 150 TTTCTGCAACAAGCAATATGCGACAAAGAAATATGATGACTGGTTCAGACATGGAGCAGA 209
|||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 70 TTTCTGCAACAATCAATATGAGACAAAGAAATATGATGACTGGTTTAGACATGGAGCAGA 129
Query 210 ATTCTCAAAGCTTTGTTCCCCATCCTGAACCTCGCATTGGAACTAACTATCTGTATCCAG 269
||||||||||||||||| |||||| ||||||| |||| ||||||||||||||||||||||
Sbjct 130 ATTCTCAAAGCTTTGTTGCCCATCTTGAACCTTGCATCGGAACTAACTATCTGTATCCAG 189
Query 270 ATATCCCACCAGTGAACACTGTTCCTCATTTAGAAGCTCATTCTCTGCAAGAACCTTATG 329
|||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 190 ATATCCCACCCGTGAACACTGTTCCTCACTTAGAAGCGCATTCTCTGCAAGAACCTTATG 249
Query 330 ATAACAACTCAATGTTCTACGGGCCTCCACAGTACCATCATCAACATGCTTCAAATCTTG 389
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 250 ACAACAACTCAATGTTCTACGGGCCTCCACAGTACCATCATCAACATTCTTCAAATCTTG 309
Query 390 GTTCTGGCATGTCAACCGCACCAAATTTCTATGTCCCTTATGTGAATTATGAAGCTCCAC 449
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 310 GTTCTGGCATGCCAACCGCACCAAATTTCTATGTCCCTTATGTGAATCATGAAGCTCCAC 369
Query 450 CGAGTTTTCTGTTGTCTCATGGAAGTAATGATGCAGTTGTTGGAGTTACTTCCACTGAAC 509
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 370 CGAGTTATCTGTTGTCTCATGGAAGTCATGGTGCAGTTGTTGGAGTTACTTCCACTGAAC 429
Query 510 ATGAGAGAAATGCCCATTTTATGGATCACGGATTCAAAAGAAAGAGTTCTGAAGTAATAC 569
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 430 ATGAAAGAAATGCCCATTTTATGGATCACGGATACAAAAGAAAGAGTTCTGAAGTAATAC 489
Query 570 CTGGAAATTCTCAGTATCCAGTTGCTCCTTGTTCTTTCCCTCAATTGAATACATCGGAGA 629
|||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||
Sbjct 490 CTGGAAATTCTCAGTATCCAGTTGCTCCGTGTTCTTTCCCTCGATTGAATACACCGGAGA 549
Query 630 CAGCACCTTTTTCATTCCCACATTTTGGTACTTATCCACAACCACTAGATCAGAGAAGTG 689
|| ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 550 CATCACCTATCTCATTCCCACAGTTTGGTACTTATCCACAACCACTAGATCAGAGAAGTG 609
Query 690 TGAGGAACAGAGCAGGAGCAGCTACAATGGATCCACTTCTCTCTCATGGTCATAACAACT 749
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 610 TGAGGAACAGAGCAGGAGCAGCTACAATGGATCCACATCTCTCTCATGGTCATAACAACT 669
Query 750 TCAGTCAAGGAAACTATGCAGCTCATCCTTTTCCACCTCTTGGCTCAATCTGGTATGACC 809
||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 670 TCAGTCATGGAAACTATGCAGCTCATCCTTTTCCACCTCCTGGCTCGATCTGGTATGACC 729
Query 810 AACACTGTAATGGCAACAGATCTGATGGATCATCTTCGCTTTGGTCTCAAGCACCTGCCG 869
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || |
Sbjct 730 AACAGTGTAATGGCAACAGATCTGATGGATCATCTTCGCTTTGGTTTCAAGCACCCGCTG 789
Query 870 TACCTTATATGCATGGTAACATTGCTACTGGATCTATAGAATCTGGTAATGTTTGCTTCC 929
|||||||||||| ||||||| |||||||||||| |||||| ||||||||||| |||||||
Sbjct 790 TACCTTATATGCCTGGTAACGTTGCTACTGGATATATAGACTCTGGTAATGTCTGCTTCC 849
Query 930 CAAGATACCATGAAACATCTAGTAGCAGAAACCCCACGCCATCTGTATACCAAAGGAACC 989
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 850 CAAGATACCATGAAACATCTAGTAGCAGAAACCCCACACCATCTGGATACCAAAGGAACC 909
Query 990 ACTATATTAGCCATCACCCCGTACCTCCTCCTCCCATCGTATACCCTCACATGCCTTCAG 1049
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 910 ACTATATGAGCCATCACCCAGTACCTCCTCCTCCCATCGTATACCCTCACATGCCTTCAG 969
Query 1050 CCTCATACGCTGAGACTTTGCATCCTGCTTCATACAGTCATATGGGACAGGTTCAATCAA 1109
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 970 CCTCATACGCTGAGACTCTGCATCCTGCTTCATACAGTCATGTGGGACAGGTTCAATCAA 1029
Query 1110 CCGGATTCAGGATAAACCAATATCCCGGAGAAGATTTTGTACCTGCAGCAATTCTAAGAC 1169
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 CCGGGTTCAGGGTAAACCAATATCCCGGAGAAGATTTTGTACCTGCAGCAATTCTAAGAC 1089
Query 1170 ACCGTGAATTGCCTCACTTTAGAGCAATGCCCGCGAATGAAAATGCATTTTGGGAAGTAG 1229
||||||||||| |||| |||||||||||||||||||| || |||| ||||||| ||||
Sbjct 1090 ACCGTGAATTGAATCACCTTAGAGCAATGCCCGCGAATTCAATTGCACTTTGGGAGGTAG 1149
Query 1230 GAGACTTCTACAATGCTGTTAATTATGTCGATCATCATCAAGACATGCGCTTAGACATAG 1289
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1150 GAGACTTCTACGATGCTGTTAATTATGTCGATCATCATCAAGACATGCGCTTAGATATAG 1209
Query 1290 AAGATATGTCATATGAGGAGCTTCTTGCTTTGAGCGACCAGATTGGAACTGTGAAGACAG 1349
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1210 AGGATATGTCATATGAGGAACTTCTTGCTTTGAGCGACCAGATTGGAACTGTGAAGACTG 1269
Query 1350 GCTTGTCATCAGAAGATGTTAAAGAACTTCTGAAAAGAAGAACCTCG--A-C--C-AGAA 1403
|||||||| ||||||||||||||| |||||||||| |||||||||| | | | ||||
Sbjct 1270 GCTTGTCAGAAGAAGATGTTAAAGATCTTCTGAAAAAAAGAACCTCGTTAACGACCAGAA 1329
Query 1404 TTAACCTGGAAGAAGGTCCATCTACTGATCTAGAGACTGATTCTTGCACGATATGCCAGG 1463
| ||||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||
Sbjct 1330 TCAACCTGGAAGAAGGTCCTTCTACCGATCAAGAAACTGATTCTTGCACGATATGCCAGG 1389
Query 1464 AAAACTACAAGAACGAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1523
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 AAAACTACAAGAACCAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAG 1449
Query 1524 AATGCTTGAAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAT 1583
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1450 AATGCTTGGAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCAC 1509
Query 1584 TGGTCATAGAGAAGAAGAAGAAGCTAAGGTTAAGTAGTAGATGAGAAGAGGTTGCTGCTA 1643
||||||| |||||||||||||||||| |||||||||||||| ||||| ||||| |||| |
Sbjct 1510 TGGTCATGGAGAAGAAGAAGAAGCTACGGTTAAGTAGTAGAGGAGAAAAGGTTACTGC-A 1568
Query 1644 CAACCTAAAAGAGGTTATCGCTGATGGTTTTTAAGACGCTTTTTATCTATTGGTTTTATA 1703
| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1569 ----------G-G-TTATCGCTGATGGTTTTTAAGACGCTTTTTATCTATTGGTTTTATA 1616
Query 1704 AGAGAGAAACAGAGTCAGGGTATGTTTCAGCCCCCAAATTCTGTAAATTTGTACTTTTGT 1763
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1617 AGAGAGAAACAGAGTCAGGGTATGTTTCAGCCTC-AAATTCTGTAAATTTGTACTTTTGT 1675
Query 1764 GCACATTAAAGTGACAGTCTAAAGCTAAGATTGGCTTAGTGACTATAAAAACTGTATAGG 1823
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1676 GCACATAAAAGTGACAGTCTAAAGCTAAGATTGGCTTAATGACTATAAAAACTGTACAGA 1735
Query 1824 CtttttttGGTTCTTTGTACATTCT-GGTTGCTCCTAGAGTTAAACTTTCTTCATCTAAA 1882
|||||| |||| |||||||||| | |||||||||||||||||| ||||||||||| |||
Sbjct 1736 CTTTTTA-GGTTTTTTGTACATT-TAGGTTGCTCCTAGAGTTAA-CTTTCTTCATCAAAA 1792
Query 1883 ACATCTCTTTT 1893
|||||| ||||
Sbjct 1793 ACATCTTTTTT 1803
> Ahg314643 jgi|Araly1|314643|fgenesh1_pm.C_scaffold_1003423
Length=1533
Score = 217 bits (117), Expect = 3e-55
Identities = 419/557 (75%), Gaps = 52/557 (9%)
Strand=Plus/Plus
Query 1085 AGTCATATGGGACAGGTTCAATCAACC-GGATTCAGGATAAACCA--AT-ATCCCG-GAG 1139
||||| ||||| | ||||||| ||||| || ||| ||||| |||| || || | | |||
Sbjct 982 AGTCACATGGGTCTGGTTCAACCAACCGGGTTTC-GGATATACCAGCATCAT-CAGCGAG 1039
Query 1140 AAGATTTTGTACCTGCAGCAATTC-TA-A-GACACCGT-GA--A-TTGCCTC-ACTTTAG 1191
| |||| |||||||| ||||| || || | ||||||| || | || |||| | ||||
Sbjct 1040 ATGATTCTGTACCTGTAGCAACTCTTAGACAACACCGTGGAGGAGTT-CCTCGGC-TTAG 1097
Query 1192 AGCAATGCCCG-CGAATGAAAATGCA-TTTTGGGAAG-TAGGAGACTT-C-T-ACAATGC 1245
|| ||||| | | ||||| |||| |||| || || | |||||||| | | | |
Sbjct 1098 AGTGATGCCTGATG-ATGAAGTTGCACTTTT-GG-AGTTTGGAGACTTCCTTGGTGGTTC 1154
Query 1246 T-G--TTAATTATGTCGATCATCATCAAGACATGCGCTTAGACATAGAAGATATGTCATA 1302
| | |||| | | |||||||||| ||| ||||| || ||||| || || ||||| ||
Sbjct 1155 TGGAAATAATCACATTGATCATCATCGAGATATGCGATTGGACATCGAGGAAATGTCTTA 1214
Query 1303 TGAGGAGCTTCTTGCTTTGAGCGA-CCAGATTGGAACTGTGAAGACAGGCTTGTCATCA- 1360
|||||||||||||||||||| || | | || ||||| || || || || ||| || |
Sbjct 1215 CGAGGAGCTTCTTGCTTTGAGTGAGCGA-ATCGGAACAGTAAACACTGGTTTGCCA-GAG 1272
Query 1361 GAAGATGTTAAAGAA-C-TTCTGAAAAGAAGAACCTCG-ACCAGAATTAACCTGGAAGAA 1417
||||||||| ||||| | || |||||| |||||| | | | |||| ||||| ||| ||
Sbjct 1273 GAAGATGTT-AAGAATCATT-TGAAAACAAGAACAT-GTTCTGGAATCAACCTTGAAAAA 1329
Query 1418 G-GTC--CATCT------ACT---GATCTAGAGACTGATTCTTGCACGATATGCCAGGAA 1465
| ||| | ||| ||| ||| |||| ||||| | ||||||||||| ||||||
Sbjct 1330 GAGTCGTCGTCTCCACGAACTAAAGATTTAGAAACTGAACCGTGCACGATATGTCAGGAA 1389
Query 1466 AACTACAAGAACGAAGATAAGATCGCAACGCTGGATTGCATGCACAAATACCATGCAGAA 1525
| || || ||||||||| ||||| ||||| |||||||| |||| | || ||||||||
Sbjct 1390 AGCTTCATGAACGAAGAAAAGATTGCAACTTTGGATTGCGGGCACGAGTATCATGCAGAG 1449
Query 1526 TGCTTGAAGAAGTGGTTGGTTATCAAGAACGTTTGCCCAATCTGTAAATCAGAGGCATTG 1585
|||||| |||| ||| || || | ||||||||||||||||||||||||||||| ||| ||
Sbjct 1450 TGCTTGGAGAAATGGCTGATTGTGAAGAACGTTTGCCCAATCTGTAAATCAGAAGCACTG 1509
Query 1586 GTCATAGAGAAGAAGAA 1602
||||| ||||||| |||
Sbjct 1510 GTCATGGAGAAGA-GAA 1525
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73856985055
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5