BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15080.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318283 jgi|Araly1|318283|fgenesh1_pm.C_scaffold_3001299 989 0.0
> Ahg318283 jgi|Araly1|318283|fgenesh1_pm.C_scaffold_3001299
Length=906
Score = 989 bits (535), Expect = 0.0
Identities = 642/690 (93%), Gaps = 22/690 (3%)
Strand=Plus/Plus
Query 259 AGGGAAGCGAAAGGAGAGACCCGATTCGGAGGTTGATGTTCCTAAGATTAATCCCTTAGC 318
||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 222 AGGGAAGCGGAAGGAGAGACCCGATTCAGAGGTTGATGTTCCTAAGATTAATCCCTTATC 281
Query 319 TCCGGTTAACGACGATTCCAGTTTGACAGATGAAGTGGCTATGGACTGTGAAATGGTTGG 378
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 TCCGATTAACGACGATTCCAGTTTGACAGATGAAGTGGCTATGGACTGTGAAATGGTTGG 341
Query 379 TGTCAGTCAAGGAACCAAAAGTGCCCTTGGACGAGTTACCTTGGTAAATAAATGGGGAAA 438
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TGTTAGTCAAGGAACCAAAAGTGCCCTTGGACGAGTTACCTTGGTAAATAAATGGGGAAA 401
Query 439 TGTTCTATATGATGAGTTTGTCCGTCCAGTGGAACATGTTGTTGACTTTCGTACTTC-TA 497
||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||
Sbjct 402 TGTTCTATATGATGAGTTTGTCCGTCCAGTGGAACGTGTTGTTGACTTCCGTACG-CATA 460
Query 498 TTAGCGGGATTCGACCTCGAGATTTGAGAAAGGCCAAAGATTTCCGCGTTGCTCAAACCA 557
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 461 TTAGCGGGATTCGACCTCGAGATTTGAGAAAGGCCAAAGATTTCCGAGTTGCTCAGACCA 520
Query 558 AAGTAGCAGAGTTGATAAAGGGAAAGATTCTCGTGGGACACGCCTTGCATAATGATCTCA 617
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 521 AAGTAGCAGAGTTGATAAAGGGAAAGATTCTCGTGGGACACGCCTTGCACAATGATCTCA 580
Query 618 AGGCTTTGCTGCTAACTCACCCGAAAAAGGACATAAGGGACACAGGAGAATATCAGCCCT 677
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 581 AGGCTTTGCTGCTAACTCACCCGAAAAAGGACATAAGGGACACAGCAGAGTATCAGCCCT 640
Query 678 TTCTCAA--------------GGG-CAAAACAAGAAAGTCTCTGAAACATCTCGCATCTG 722
||||||| ||| |||||| |||||||||||||||||||||||| |||
Sbjct 641 TTCTCAATAATCTCTCAAACAGGGACAAAACCAGAAAGTCTCTGAAACATCTCGCAGCTG 700
Query 723 AAATTCTAGGGGCTGACATTCAAAATGGAGAGCACTGCCCTATTGATGATGCAAGAGCTG 782
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 701 AAATTCTAGGGGCTGACATTCAAAATGGAGAGCACTGCCCTATTGATGATGCACGAGCTG 760
Query 783 CGATGATGCTTTACCAAAAGAACAGAAAAGAGTGGGAGAAAACTGTGAAAGACCAGACAC 842
| ||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 761 CTATGATGCTTTATCAGAAGAACAGAAAAGAGTGGGAGAAAAATGTGAAAGACCAGACAC 820
Query 843 GGATGTGGCTGAAACAAAAGAAGCGTAAGCCTAAGAAGAAAGCTAAAT-ATGGGAACAAC 901
|||||||||||||||||||||||||||||||||||||||| | |||| | ||||||
Sbjct 821 GGATGTGGCTGAAACAAAAGAAGCGTAAGCCTAAGAAGAAGG-TAAAAGAAGGGAAC--- 876
Query 902 GCTTCCACCAATGACAATCCAATTGTTTGA 931
||||| |||||| |||||||| ||||||||
Sbjct 877 GCTTCGACCAATCACAATCCAGTTGTTTGA 906
Score = 265 bits (143), Expect = 6e-70
Identities = 154/159 (97%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 104 ATGAGTTCTGATCTGAAGAGAAAGCCGAAGAAGAAGA-TAACTCCTAAACCTGTTCAATT 162
||||||||||||||||||||||||| | ||||||||| ||| ||||||||||||||||||
Sbjct 1 ATGAGTTCTGATCTGAAGAGAAAGCAGCAGAAGAAGATTAA-TCCTAAACCTGTTCAATT 59
Query 163 AAACCCTAATTGGTCACTCCTCCAACAAAAACTGAAATCTGATTCTCATGGCAACACTCG 222
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 60 AAACCCTAATTGGTCACTCCTCCAACAAAAGCTGAAATCTGATTCTCATGGCAACACTCG 119
Query 223 AAAATCTTCAAACCCAGAAAATCCCAGCTCCATATTAGG 261
|||||||||||||||||||||||||||||||||||||||
Sbjct 120 AAAATCTTCAAACCCAGAAAATCCCAGCTCCATATTAGG 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5