BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15090.1 Length=1506 Score E Sequences producing significant alignments: (Bits) Value Ahg478938 jgi|Araly1|478938|fgenesh2_kg.3__1639__AT3G15090.1 2409 0.0 > Ahg478938 jgi|Araly1|478938|fgenesh2_kg.3__1639__AT3G15090.1 Length=1494 Score = 2409 bits (1304), Expect = 0.0 Identities = 1437/1501 (96%), Gaps = 10/1501 (1%) Strand=Plus/Plus Query 1 GTAAACAAAGCCGCTCTGCGGACGCAAATGCTGCCACGTCTTCAATTTCCGTTTCTGTGT 60 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 GTAAACAAACCCGCTCTGCGGACGCAAATGCTGCCACGTCTTTAATTTCCGTTTCTGTGT 60 Query 61 AAACAAGAAAACCT-AAAAAACAGAAGCAAGCAGATTCTCGCATCAACGAAGAAGAAGAA 119 |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 AAACAAGAAAACCTAAAAAAACAGAAGCAAGCAGATTCTCGCATCAAC---GAAGAAGAA 117 Query 120 GAAAAGGACGAGTAGATTGATTTCTTAGACGACGGAGAAATGCGAGTGATGAGATCATTG 179 | || |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 118 G--AA-GACGAGTAAATTGATTTCATAGACGACGGAGAAATGCGAGTGATGAGATCATTG 174 Query 180 CGCGGTAATTCCGGTGCTGGATTGGTTTTCCGGCCGGCGAGGTTAAATTCTCTTCGGAGC 239 ||| ||||||||||||| |||||| ||| ||||||||||||||||| ||||||||||||| Sbjct 175 CGCTGTAATTCCGGTGCAGGATTGATTTCCCGGCCGGCGAGGTTAAGTTCTCTTCGGAGC 234 Query 240 GTCTTTACCGGTTGCCGTGCTGTGATTTTGCCCCGCTTTGGTGGTCCGGAGGTTTTTGAG 299 || ||||||||||||||||||||||| || ||||||||||| |||||||||||||||||| Sbjct 235 GTTTTTACCGGTTGCCGTGCTGTGATGTTACCCCGCTTTGGCGGTCCGGAGGTTTTTGAG 294 Query 300 CTCCGGGAGAATGTTCCGGTGCCGAATCTGAATCCAAATGAGGTTCTTGT-CAAGGCGAA 358 |||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 295 CTCCGGGAGAATGTTCCGGTGCCGAATCTGAATCCAAATGAGGTTCTTGTCCGA-GCGAA 353 Query 359 AGCTGTCTCCGTTAATCCTCTTGATTGCAGAATACGAGCTGGATATGGACGTTCTGTATT 418 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 354 AGCTGTTTCCGTCAATCCTCTTGATTGCAGAATACGAGCTGGATATGGACGTTCTGTATT 413 Query 419 CCAACCGCATCTACCTATTATAGTTGGACGTGATGTCAGTGGTGAAGTTGCGGCAATTGG 478 |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| Sbjct 414 CCAACCGCATCTACCTATTATAGTTGGACGCGATATCAGTGGTGAAGTTGCGGCAATTGG 473 Query 479 GACTTCAGTAAAGTCACTTAAAGTAGGACAAGAAGTTTTTGGTGCGTTGCATCCGACGGC 538 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 474 GACTTCAGTAAAGTCACTTAAAGTTGGACAAGAAGTTTTTGGTGCGTTGCATCCTACGGC 533 Query 539 GTTAAGAGGTACTTATACTGACTATGGAATTCTTTCGGAAGACGAACTCACGGAAAAGCC 598 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 534 GTTGAGAGGTACTTATACTGACTATGGAATTCTTTCGGAAGACGAACTCACGGAAAAGCC 593 Query 599 ATCATCAATTTCACATGTGGAAGCAAGTGCCATTCCTTTTGCAGCTTTGACTGCTTGGCG 658 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 594 ATCATCTGTTTCACATGTGGTAGCAAGTGCCATTCCTTTTGCAGCTTTGACTGCTTGCCG 653 Query 659 TGCTTTGAAGAGTAATGCAAGGATAACTGAAGGACAAAGACTATTAGTCTTTGGAGGAGG 718 |||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||| Sbjct 654 TGCTTTGAAGAGTAATGCTCGGATAACTGAAGGACAAAGGCTCTTAGTCTTTGGAGGAGG 713 Query 719 AGGAGCAGTAGGTTTTTCTGCAATCCAGCTTGCGGTAGCATCTGGGTGTCATGTTACAGC 778 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 714 AGGAGCAGTAGGTTTTTCTGCAATCCAGCTTGCGGTAGCATCTGGGTGCCATGTTACGGC 773 Query 779 CTCTTGTGTTGGTCAGACTAAAGACAGAATACTTGCAGCTGGGGCCGAGCAAGCTGTTGA 838 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 774 CTCTTGTGTGGGTCAGACTAAAGACAGAATACTTGCAGCTGGTGCCGAGCAAGCTGTTGA 833 Query 839 CTACACAACCGAGGACATTGAGTTGGCGGTAAAAGGAAAATTTGATGCCGTGTTAGATAC 898 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || || Sbjct 834 CTACACAACCGAGGACATTGAGTTGGCGGTAAAAGGAAAATTTGATGCTGTGTTGGACAC 893 Query 899 TATTGGTGGGCCTGAAACGGAGAGAATAGGCATTAACTTCTTAAGGAAGGGTGGAAACTA 958 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 894 TATTGGTGGGCCTGAAACAGAGAGAATAGGCATTAACTTCTTAAGGAAGGGTGGAAACTA 953 Query 959 TATGACTCTTCAGGGTGAGGCTGCATCGTTGACTGATAAATACGGTTTTGTGGTTGGGCT 1018 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 954 TATGACTCTCCAGGGTGAGGCTGCATCGTTGACTGATAAATACGGTTTTGTGGTTGGGCT 1013 Query 1019 TCCCCTTGCAACATCGCTCTTGATGAAGAAAAAGATACAATATCAGTATTCTCATGGAAT 1078 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1014 TCCCCTTGCAACATCACTCTTGATGAAGAAAAAGATACAATATCAGTATTCTCATGGAAT 1073 Query 1079 AGACTATTGGTGGACGTATATGAGGGCTGATCCTGAAGGTCTAGCCGAGATTCAGCGTTT 1138 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1074 AGACTATTGGTGGACGTATATGAGGGCTGATCCTGAAGGTCTAGCCGAGATTCAGCGGTT 1133 Query 1139 AGTTGGAGCTGGAAAGCTAAAAATACCTGTTGAAAAAACATTTCCAATAACCGATGTTGT 1198 ||||||||| ||||||||||| |||||||| |||||||| ||| |||||||||||||||| Sbjct 1134 AGTTGGAGCCGGAAAGCTAAAGATACCTGTCGAAAAAACTTTTTCAATAACCGATGTTGT 1193 Query 1199 AGCAGCTCATGAAGCCAAGGAGAAGAAACAGATTCCGGGTAAGGTGGTTCTAGAGTTCTG 1258 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1194 TGCAGCTCATGAAGCCAAGGAGAAGAAGCAGATTCCGGGTAAGGTGGTTCTAGAGTTCTG 1253 Query 1259 AACTACATATACATAGTAGAAATAATAACACCTGCATAGTTCTCTAGCAGTTGTTCTTTC 1318 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1254 AACTACATATACATAGTAGCAATAATAACACCTGCATAGTTCTCTAGCAGTTGTTCTTTC 1313 Query 1319 TAGAATTTACACGCAGAGAAACAAATGTTTCGCGTCTGGAGTTTTCTGTAAATGAGATCT 1378 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1314 TAGAATTTACACGCAGAGAAACAAATGTTTCGCGTCTGGAGTTTTCTGTAAATGAGATCT 1373 Query 1379 ATCAGGCTTAGATTCAGATCAAGAACTTGAAGTGTCTGTATAGACTTTCCAAAGGGTTCG 1438 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 1374 ATCAGGCTTAGATTCAGATCAAGAACTTGAAGTTTCTGTATAGACTTTCCAAAAGGTTCG 1433 Query 1439 TTTTTATTTGGATTTTGTCTGTGTTGCAAACTACTAAGCCAAGTAATGGAAATGGTTTAG 1498 ||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||| Sbjct 1434 GTTTTATTTGGATTTTGTCTGTTTTGCAAG-TACTAAGCCTAGTAATGGAAATGGTTTAG 1492 Query 1499 A 1499 | Sbjct 1493 A 1493 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56373562600 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5