BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15090.1
Length=1506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478938 jgi|Araly1|478938|fgenesh2_kg.3__1639__AT3G15090.1 2409 0.0
> Ahg478938 jgi|Araly1|478938|fgenesh2_kg.3__1639__AT3G15090.1
Length=1494
Score = 2409 bits (1304), Expect = 0.0
Identities = 1437/1501 (96%), Gaps = 10/1501 (1%)
Strand=Plus/Plus
Query 1 GTAAACAAAGCCGCTCTGCGGACGCAAATGCTGCCACGTCTTCAATTTCCGTTTCTGTGT 60
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GTAAACAAACCCGCTCTGCGGACGCAAATGCTGCCACGTCTTTAATTTCCGTTTCTGTGT 60
Query 61 AAACAAGAAAACCT-AAAAAACAGAAGCAAGCAGATTCTCGCATCAACGAAGAAGAAGAA 119
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AAACAAGAAAACCTAAAAAAACAGAAGCAAGCAGATTCTCGCATCAAC---GAAGAAGAA 117
Query 120 GAAAAGGACGAGTAGATTGATTTCTTAGACGACGGAGAAATGCGAGTGATGAGATCATTG 179
| || |||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 118 G--AA-GACGAGTAAATTGATTTCATAGACGACGGAGAAATGCGAGTGATGAGATCATTG 174
Query 180 CGCGGTAATTCCGGTGCTGGATTGGTTTTCCGGCCGGCGAGGTTAAATTCTCTTCGGAGC 239
||| ||||||||||||| |||||| ||| ||||||||||||||||| |||||||||||||
Sbjct 175 CGCTGTAATTCCGGTGCAGGATTGATTTCCCGGCCGGCGAGGTTAAGTTCTCTTCGGAGC 234
Query 240 GTCTTTACCGGTTGCCGTGCTGTGATTTTGCCCCGCTTTGGTGGTCCGGAGGTTTTTGAG 299
|| ||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||
Sbjct 235 GTTTTTACCGGTTGCCGTGCTGTGATGTTACCCCGCTTTGGCGGTCCGGAGGTTTTTGAG 294
Query 300 CTCCGGGAGAATGTTCCGGTGCCGAATCTGAATCCAAATGAGGTTCTTGT-CAAGGCGAA 358
|||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 295 CTCCGGGAGAATGTTCCGGTGCCGAATCTGAATCCAAATGAGGTTCTTGTCCGA-GCGAA 353
Query 359 AGCTGTCTCCGTTAATCCTCTTGATTGCAGAATACGAGCTGGATATGGACGTTCTGTATT 418
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 AGCTGTTTCCGTCAATCCTCTTGATTGCAGAATACGAGCTGGATATGGACGTTCTGTATT 413
Query 419 CCAACCGCATCTACCTATTATAGTTGGACGTGATGTCAGTGGTGAAGTTGCGGCAATTGG 478
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 414 CCAACCGCATCTACCTATTATAGTTGGACGCGATATCAGTGGTGAAGTTGCGGCAATTGG 473
Query 479 GACTTCAGTAAAGTCACTTAAAGTAGGACAAGAAGTTTTTGGTGCGTTGCATCCGACGGC 538
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 474 GACTTCAGTAAAGTCACTTAAAGTTGGACAAGAAGTTTTTGGTGCGTTGCATCCTACGGC 533
Query 539 GTTAAGAGGTACTTATACTGACTATGGAATTCTTTCGGAAGACGAACTCACGGAAAAGCC 598
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GTTGAGAGGTACTTATACTGACTATGGAATTCTTTCGGAAGACGAACTCACGGAAAAGCC 593
Query 599 ATCATCAATTTCACATGTGGAAGCAAGTGCCATTCCTTTTGCAGCTTTGACTGCTTGGCG 658
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 594 ATCATCTGTTTCACATGTGGTAGCAAGTGCCATTCCTTTTGCAGCTTTGACTGCTTGCCG 653
Query 659 TGCTTTGAAGAGTAATGCAAGGATAACTGAAGGACAAAGACTATTAGTCTTTGGAGGAGG 718
|||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||
Sbjct 654 TGCTTTGAAGAGTAATGCTCGGATAACTGAAGGACAAAGGCTCTTAGTCTTTGGAGGAGG 713
Query 719 AGGAGCAGTAGGTTTTTCTGCAATCCAGCTTGCGGTAGCATCTGGGTGTCATGTTACAGC 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 714 AGGAGCAGTAGGTTTTTCTGCAATCCAGCTTGCGGTAGCATCTGGGTGCCATGTTACGGC 773
Query 779 CTCTTGTGTTGGTCAGACTAAAGACAGAATACTTGCAGCTGGGGCCGAGCAAGCTGTTGA 838
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 774 CTCTTGTGTGGGTCAGACTAAAGACAGAATACTTGCAGCTGGTGCCGAGCAAGCTGTTGA 833
Query 839 CTACACAACCGAGGACATTGAGTTGGCGGTAAAAGGAAAATTTGATGCCGTGTTAGATAC 898
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 834 CTACACAACCGAGGACATTGAGTTGGCGGTAAAAGGAAAATTTGATGCTGTGTTGGACAC 893
Query 899 TATTGGTGGGCCTGAAACGGAGAGAATAGGCATTAACTTCTTAAGGAAGGGTGGAAACTA 958
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TATTGGTGGGCCTGAAACAGAGAGAATAGGCATTAACTTCTTAAGGAAGGGTGGAAACTA 953
Query 959 TATGACTCTTCAGGGTGAGGCTGCATCGTTGACTGATAAATACGGTTTTGTGGTTGGGCT 1018
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TATGACTCTCCAGGGTGAGGCTGCATCGTTGACTGATAAATACGGTTTTGTGGTTGGGCT 1013
Query 1019 TCCCCTTGCAACATCGCTCTTGATGAAGAAAAAGATACAATATCAGTATTCTCATGGAAT 1078
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TCCCCTTGCAACATCACTCTTGATGAAGAAAAAGATACAATATCAGTATTCTCATGGAAT 1073
Query 1079 AGACTATTGGTGGACGTATATGAGGGCTGATCCTGAAGGTCTAGCCGAGATTCAGCGTTT 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1074 AGACTATTGGTGGACGTATATGAGGGCTGATCCTGAAGGTCTAGCCGAGATTCAGCGGTT 1133
Query 1139 AGTTGGAGCTGGAAAGCTAAAAATACCTGTTGAAAAAACATTTCCAATAACCGATGTTGT 1198
||||||||| ||||||||||| |||||||| |||||||| ||| ||||||||||||||||
Sbjct 1134 AGTTGGAGCCGGAAAGCTAAAGATACCTGTCGAAAAAACTTTTTCAATAACCGATGTTGT 1193
Query 1199 AGCAGCTCATGAAGCCAAGGAGAAGAAACAGATTCCGGGTAAGGTGGTTCTAGAGTTCTG 1258
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1194 TGCAGCTCATGAAGCCAAGGAGAAGAAGCAGATTCCGGGTAAGGTGGTTCTAGAGTTCTG 1253
Query 1259 AACTACATATACATAGTAGAAATAATAACACCTGCATAGTTCTCTAGCAGTTGTTCTTTC 1318
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 AACTACATATACATAGTAGCAATAATAACACCTGCATAGTTCTCTAGCAGTTGTTCTTTC 1313
Query 1319 TAGAATTTACACGCAGAGAAACAAATGTTTCGCGTCTGGAGTTTTCTGTAAATGAGATCT 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TAGAATTTACACGCAGAGAAACAAATGTTTCGCGTCTGGAGTTTTCTGTAAATGAGATCT 1373
Query 1379 ATCAGGCTTAGATTCAGATCAAGAACTTGAAGTGTCTGTATAGACTTTCCAAAGGGTTCG 1438
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 1374 ATCAGGCTTAGATTCAGATCAAGAACTTGAAGTTTCTGTATAGACTTTCCAAAAGGTTCG 1433
Query 1439 TTTTTATTTGGATTTTGTCTGTGTTGCAAACTACTAAGCCAAGTAATGGAAATGGTTTAG 1498
||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||
Sbjct 1434 GTTTTATTTGGATTTTGTCTGTTTTGCAAG-TACTAAGCCTAGTAATGGAAATGGTTTAG 1492
Query 1499 A 1499
|
Sbjct 1493 A 1493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56373562600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5