BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15150.1
Length=1033
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929301 jgi|Araly1|929301|scaffold_301758.1 1247 0.0
> Ahg929301 jgi|Araly1|929301|scaffold_301758.1
Length=794
Score = 1247 bits (675), Expect = 0.0
Identities = 758/798 (95%), Gaps = 5/798 (1%)
Strand=Plus/Plus
Query 37 TTGGAGCGAAGGAGCGATAGATATGGCGTCGGCGTCCTCGTCTGACGGAGTTGCCGGAAG 96
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTGGAGCGAAGGACCGATAAATATGGCGTCGGCGTCCTCGTCTGACGGAGTTGCCGGAAG 60
Query 97 GATTCAGAACGCTTCTTTGGTTCTTGTCTCCGATAACAGTTCCACGCTTGCTGATATCCG 156
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 61 GATTCAGAACGCTTCTTTGGTTCTTGTCTCCGATACCAATTCCACGCTTGCTGATATCCG 120
Query 157 CAAAGCTGTGGCAATGATGAAGAACATTGCAGTTCAATTGGAGAAAGAAAATCAAACGGA 216
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 121 CAAAGCTGTGGCAATGATGAAGAACATTGCTGTTCAATTGGAGAAAGAAAATCAAACTGA 180
Query 217 CAAGGTTAAGGACCTTGAAAATTCTGTGGCTGAGTTATTGGATTTGCATAGTGATTGTAA 276
|||||| ||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 181 CAAGGTCAAGGACCTTGAAAATTCTGTGGCTGAGCTATTGGATTTGTATAGTGATTGTAA 240
Query 277 TCACCGTTCGACAGCAATTCAATCCGTTGCAAATCGGT-ACCAACCCGTGGAACAATTAA 335
|||||||||| ||||||||||||||||||||||| ||| ||||||||| |||||| ||||
Sbjct 241 TCACCGTTCGTCAGCAATTCAATCCGTTGCAAAT-GGTTACCAACCCGGGGAACAGTTAA 299
Query 336 CGGACTTTAAAAAGTTGCTTGATGATGAATTCACAAAGCTCAAGGCTACACCTTCCTCAG 395
|||||||| |||||||||||||| |||||||||||| ||||||||||||||||| | |
Sbjct 300 CGGACTTTCAAAAGTTGCTTGATTTTGAATTCACAAAACTCAAGGCTACACCTTC-T--G 356
Query 396 TGCCACAAAATGATCATTTGATGCGCCAGTTCAGGGAAGCAGTTTGGAATGTTCATCATG 455
|||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 357 TGCCGCAAAATGATCATTTGATGCGTCAGTTCAGGGAAGCAGTTTGGAACGTTCATCATG 416
Query 456 CAGGTGAACCAATGCCTGGTGACGATGATGAGGACATTGTTATGACCAGTACTCAGTGCC 515
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 417 CAGGTGAACCAATGCCTGGTGACGATGAAGAGGACATTGTCATGACCAGTACTCAGTGCC 476
Query 516 CTCTTCTAAACATGACATGTCCCTTGAGCGGGAAGCCTGTCACTGAATTAGCAGATCCAG 575
|||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 CTCTGCTAAACATGACGTGTCCCTTGAGCGGGAAGCCTGTCACTGAACTAGCAGATCCAG 536
Query 576 TTCGCAGTATGGATTGCAGGCACGTCTATGAAAAATCTGTAATCCTGCATTACATAGTCA 635
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 537 TTCGCAGTATGGATTGCAGGCACGTCTATGAAAAAGCTGTAATCCTGCATTACATAGTCA 596
Query 636 ACAATCCAAATGCGAATTGTCCTGTAGCAGGGTGCCGAGGTAAACTGCAGAATAGCAAAG 695
|||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 597 ACAATCCAAACGGGAATTGTCCTGTAGCAGGATGCCGAGGTAAACTGCAGAACAGCAAAG 656
Query 696 TGATTTGTGATGCAATGTTGAAGTTTGAAATAGAGGAGATGCGCTCGTTGAACAAACAAT 755
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 657 TGATTTGTGATGCAATGTTGAAGTTTGAAATCGAGGAGATGCGCTCGTTGAACAAACAAT 716
Query 756 CTAATAGGGCTGAAGTGATTGAAGACTTCACAGAAGATGTGGATGAAGATTAGAGATCAG 815
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 717 CTAATAGGGCTGAAGTGATTGAAGACTTCACAGAAGATGTCGATGAAGATTAGAGATCAA 776
Query 816 ACATTTCTTGGACCGGGT 833
|||| |||| ||| ||||
Sbjct 777 ACATATCTTAGACGGGGT 794
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38427900336
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5