BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15160.1
Length=2098
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478948 jgi|Araly1|478948|fgenesh2_kg.3__1649__AT3G15160.1 2961 0.0
> Ahg478948 jgi|Araly1|478948|fgenesh2_kg.3__1649__AT3G15160.1
Length=1882
Score = 2961 bits (1603), Expect = 0.0
Identities = 1803/1898 (95%), Gaps = 19/1898 (1%)
Strand=Plus/Plus
Query 58 ATGGCATGTAGTTTAAGGATATAGATCTTTGAATAAACGACGTCGTCTTCTTTCCAATCC 117
|||||||| |||||||||||||||||||||| | || || |||||||||| ||||||||
Sbjct 1 ATGGCATGCAGTTTAAGGATATAGATCTTTGGA-AACCGCCGTCGTCTTCGCTCCAATCC 59
Query 118 T-CT--TTCTCCGGGACTCTGGAGTCGCCGAAGCTGAAACTTCTTCATCCATCATCATAT 174
| || | ||||||||||| |||||||| ||||| |||||||||||||||| | | ||
Sbjct 60 TCCTCCTGCTCCGGGACTC-GGAGTCGCTGAAGCCGAAACTTCTTCATCCA-C--C--AT 113
Query 175 CATATGAATTTTTTCTAGTGATCTTCTTTTTGATTGAGAACATGAGTGATCAAGAAGGAG 234
| |||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||
Sbjct 114 --T-TGAA--TTTTCTACTGAGCTTCTTTTTGTTTGAGAACATGAGTGATCAAGAAGGAG 168
Query 235 ACTGGGATTTTTACCTCAGAATCCTAAGCAACAGCGCGCGGGATTCTACGGATCCTGCTT 294
||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 169 ACTGGAATTTTTACCTCAGAATCCTAAGCAATAGCGCGCGGGATTCCACGGATCCTGCTT 228
Query 295 CTGATCCATCTATACTACAATCAGTGAAGAAGCTGCATGGGTTCTGTAAAATGGAGAAAT 354
||||||||||||| |||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 229 CTGATCCATCTATTCTACAATCAGTGAAGAAGCTACATGGGTTCTGTAAATTGGAGAAAT 288
Query 355 CAGATGATCTTGTGGCTAGAATTTATCCACAATTCAATAAAGTCTTCCATCGTTCGGTTG 414
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 289 CAGATGATCTTGTGGCTAGAATTTATCCACAAATCAATAAGGTCTTCCATCGTTCGGTTG 348
Query 415 CTTCACTATCTCAGTCCGAGTCAGGGGCGTCCAAAGGCCTTCTCTTGCTAGCCATTCTTC 474
||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 349 CTTCACTGTCTCAGTCTGAGTCAGGGACGTCCAAAGGCCTTCTCTTGCTAGCCATTCTTC 408
Query 475 AGTTTTTTCTTGATTTTGGGGATATGGTTCTGCACGATTCTGACCCAAGTTTGAGGACAT 534
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 409 AGTTTTTTCTTGATTTTGGGGATATGGTTCTGCACGATGCGGACCCAAGTTTGAGGACAT 468
Query 535 TCTTCCGCTCATGTCTTAGCCGTGAGTTCTCAGATGCCGCTGTGGCAGAGGCAACTTGTG 594
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 469 TCTTCCGCTCATGTCTTAGCCGTGAGTTCTCAGATTCTGCTGTTGCAGAGGCAACTTGTG 528
Query 595 AATTCCTTGTTGTGAACCAAAGAAAGCTCTTAGCATCTTTCCCAAACTTACTCCCTCAGT 654
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AATTCCTTGTTGCGAACCAGAGAAAGCTCTTAGCATCTTTCCCAAACTTACTCCCTCAGT 588
Query 655 TTTTCCCGTTGTTGCTTAAGCTCATTGCCTGGAATTGGGAGAAGTTGGAGAAGTCCTTCC 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 589 TTTTCCCGTTGTTGCTTAAGCTCATTGCCTGGAATTGGGAGAAGTTGGAGAAGTCATTCC 648
Query 715 TGAAGATATTTCCAGGACTGATATCACCTGGGTCATTTCTTCCTCTGTTTCCATCCATTG 774
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 649 TGAAGATATTTCCAGGACTGATATCTCCTGGGTCATTTCTTCCTCTGTTTCCATCCATTG 708
Query 775 TAGACTTGCCAATATTGGTCGTGGCATTAGAAAAGGTGGAAAGGAGCTCGGGGTCGGGGT 834
|||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 709 TAGATTTGCCAATGTTGGTTGTGGCATTAGAAAAGGTGGAAAGGAGCTCGGGGTCTGGGT 768
Query 835 CAAGGGTTGGAGGTAGCATTGCTTCAATTCAGAAGAGTGCAGCTCCGGAGATGCTTCTTG 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CAAGGGTTGGAGGTAGCATTGCTTCAATTCAGAAGAGTGCAGCTCCGGAGATGCTTCTTG 828
Query 895 CCCTTATGGATGAAGCATATACTGGTTCAACCATCGGGGATGGAGGGGATGACTCTGAAT 954
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 829 CCCTTATGGATGAAGCATATACTGGTTCAACCATCGGGGATGGAGGAGATGACTCTGAAT 888
Query 955 CTGAAGATAACAATACAATAGATGTAGCTGATCCTCTGTTTCTGGAGCTTCTGAAGGACG 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 889 CTGAAGATAACAATACAATAGATGTAGCTGATCCTCTGTTTCTGGAGCTTCTGAAAGACG 948
Query 1015 AAAATGATGGTCTAGCGGAAAGACACCGCGCTTCTCCTACATTGAATGCAGCGCTGCAGG 1074
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 949 AAAATGATGGTCTAGCTGAAAGACACCGCGCTTCTCCTGCATTGAATGCAGCGCTGCAGG 1008
Query 1075 CTGCTGCAAGTGGTCCTCGGTCAGAGAGGATGAAGCAGACTCTTAAGATTGCTCCCCGAC 1134
|||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 1009 CTGCTGCACGTGGTCCTCAGTCTGAGAGGATGAAGCAGGCTCTTAAGATTGCTCCTCGAC 1068
Query 1135 TTCTTGATGTCTACTTTAGTGTTACATTGCGAGATGCAAATGACTCTCTGATCTGTGCTT 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1069 TTCTTGATGTCTACTTTAGTGTTACATTGCGAGATGCAAATGACTCTCTGATCTGTGCAT 1128
Query 1195 TAATCCCTCTACTCATGACAAGAAACTCTACAATGTTTCCGGATAAGATTTTTTCTCATG 1254
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1129 TAATCCCTCTACTCATGACAAGAAACTCTACAATGTTTCCGGATAAGAATTTTTCTCATG 1188
Query 1255 AGATCCGTAGGAGGCTACTGGAATTTGTACTAGCTGCATTTCAGAGGTCTCCAAATTTCA 1314
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1189 AGATCCGTAAGAGGCTACTGGAATTCGTACTAGCTGCATTTCAGAGGTCTCCAAATTTCA 1248
Query 1315 TTGCCCTGTTGAAAAAGCCTATTATTGACCGACTTGGGGAAGCTTACGATGATGTTGCAA 1374
|||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct 1249 TTGCCCTGTTGAAAAAGCCTATAATTGACCGGCTTGGAGAAGCTTACGATGATGTTGCAA 1308
Query 1375 AGAGAGAGTTAGCCTTACAGCTATGTTGGGCAATTGGAGAGTATGGTGGTGGGGGAGAAT 1434
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1309 AGAGAGAGTTAGCCTTACAGCTATGTTGGGCAATTGGAGAGTATGGTGGCGGGGGAGAAT 1368
Query 1435 CTCACAAGGAAGCTGCTCGAGAGCTTTTTGAAAGTTTAGAGTTGCTTGTATATGAGAATC 1494
| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1369 CACACAAGGAAGCTGCTCGCGAGCTTTTTGAAAGTTTAGAGTTGCTTCTATATGAGAATC 1428
Query 1495 TCTCATCAAGCCGCCTAGGTTTGAGGCAAGAATCTGGGAATGGTTCAAGAAGAACAACAC 1554
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1429 TCTCATCAAGCCGCCTAGGTTTGAGGCAAGAGTCTGGGAATGGTTCCAGAAGAACAACAC 1488
Query 1555 AGTCAAGACTTCTGTGTTTTGTAGTGACAGCTATCGCAAAGCTCGCAACATATCACCGAG 1614
||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||| |
Sbjct 1489 AGTCAAGACTTTTGTGTTTTGTTGTGACAGCTATTGCAAAGCTTGCAACATATCACCGGG 1548
Query 1615 AATTATTACCAAGAGCCCGCGTCGCCTTGGGAAAGGTAGTAAAGTCTCGGATATCTGATG 1674
|||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 1549 AATTGTTACCAAGAGCCCGTGTCGCCTTGGGAAAGGTAGTACGGTCTCGGATATCTGATG 1608
Query 1675 CAAGGGTTTGGAGACGAGCACATGATTACTTAGGACTAATGAACGAACCAGGAATCTGTT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 CAAGGGTTTGGAGACGAGCACATGATTACTTAGGACTAATGAACGAACCAGGAATCTGTT 1668
Query 1735 GGTCTGTGTTAGGACCTTCACGGGTTTCAGAAAAACGGTTTCCAGGCACAGTTAACTGGA 1794
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1669 GGTCTGTTTTAGGACCTTCGCGGGTTTCAGAAAAACGGTTTCCAGGCACAGTTAACTGGA 1728
Query 1795 GCGAGGGTGGACAAAAAATGGTTGCACACATTCCATTTCACATTCTTAGTGAACAAGGAG 1854
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1729 GCGAGGGCGGACAAAAAATGGTTGCACACATTCCATTTCACATCCTTAGTGAACAAGGAG 1788
Query 1855 GTCCTCCATTCCATGACTTTGCTTTCTCCGATATCATCCCCAAAAACTAATCAAACAAAC 1914
||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1789 GTCCTCCGTTCCATGACTTTGCTTTCTCCGATGTCATCCCCAAAAACTGATCAAACAA-- 1846
Query 1915 AAGTCTCTTAAATTGTGTTTTATTGTGAATAGTGAAAC 1952
|||||||||||||| |||| ||||||||||||||||
Sbjct 1847 --GTCTCTTAAATTGTTTTTTGTTGTGAATAGTGAAAC 1882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78922987640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5