BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15170.1
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478949 jgi|Araly1|478949|fgenesh2_kg.3__1650__AT3G15170.1 1515 0.0
> Ahg478949 jgi|Araly1|478949|fgenesh2_kg.3__1650__AT3G15170.1
Length=973
Score = 1515 bits (820), Expect = 0.0
Identities = 929/980 (95%), Gaps = 14/980 (1%)
Strand=Plus/Plus
Query 1 ATTTTTAGAGCTTTCTTCTTGTGCCGACAATGGATGTTGATGTGTTTAACGGTTGGGGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATTTTTAGAGCTTTCTTCTTGTGCCGACAATGGATGTTGATGTGTTTAACGGTTGGGGGA 60
Query 61 GGCCAAGATTTGAAGATGAATCCCTTATGCCACCTGGGTTTAGGTTTCATCCAACTGATG 120
||||||| | |||||||||| |||| ||||||||||||||||| ||||||||||||||||
Sbjct 61 GGCCAAGGTATGAAGATGAAACCCTAATGCCACCTGGGTTTAGATTTCATCCAACTGATG 120
Query 121 AAGAGCTGATCACTTACTATCTCCTCAAGAAGGTTCTTGACTCTAATTTCTCTTGTGCCG 180
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 121 AAGAGCTGATCACTTACTATCTCCTCAAGAAAGTTCTTGACTCCAATTTCTCTTGTGCCG 180
Query 181 CCATTTCTCAAGTTGATCTCAACAAGTCTGAGCCTTGGGAGCTTCCTGAGAAAGCGAAAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCATTTCTCAAGTTGATCTCAACAAGTCTGAGCCTTGGGAGCTTCCTGAGAAAGCGAAAA 240
Query 241 TGGGGGAGAAGGAGTGGTACTTCTTCACACTAAGAGACCGTAAATACCCAACGGGACTGA 300
|||||||||| || |||||||| |||||||||||||| || ||||||||||| ||||| |
Sbjct 241 TGGGGGAGAAAGAATGGTACTTTTTCACACTAAGAGATCGAAAATACCCAACTGGACTAA 300
Query 301 GAACGAACAGAGCAACAGAAGCTGGTTACTGGAAAGCCACTGGTAAAGACAGAGAGATCA 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 301 GAACGAACAGAGCAACAGAAGCTGGTTACTGGAAAGCCACAGGTAAAGACAGAGAGATCA 360
Query 361 AAAGCTCAAAGACAAAATCACTTCTCGGGATGAAGAAAACTCTTGTCTTTTACAAAGGCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAAGCTCAAAGACAAAATCACTTCTCGGGATGAAGAAAACTCTTGTCTTTTACAAAGGCA 420
Query 421 GAGCTCCTAAAGGAGAGAAGAGTTGTTGGGTCATGCATGAGTATCGCCTTGACGGCAAAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGCTCCTAAAGGAGAGAAGAGTTGTTGGGTCATGCATGAGTATCGCCTTGACGGCAAAT 480
Query 481 TCTCTTACCATTACATTTCCTCCTCCGCTAAGGATGAATGGGTTCTCTGTAAAGTTTGTC 540
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTCTTACCATTACATTTCTTCTTCCGCTAAGGATGAATGGGTTCTCTGTAAAGTTTGTC 540
Query 541 TGAAAAGCGGCGTAGTTAGTAGAGAGACGAACTTGAtctcttcttcttcttcttct---- 596
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 541 TGAAAAGCGGCGTAGTTAGCAGAGAGACAAACTTGATCTCTTCTTCTTCTTCTTCTTCTT 600
Query 597 --GCCGTCACCGGAGAGTTCTCCTCTGCCGGTTCTGCAATTGCTCCGATCATCAATACCT 654
|||||| ||||||||| |||||||||||| |||| |||||||||||||||||||||||
Sbjct 601 CTGCCGTCGCCGGAGAGTACTCCTCTGCCGGATCTGTAATTGCTCCGATCATCAATACCT 660
Query 655 TTGCGACGGAGCACGTGTCCTGTTTCTCCAATAACTCTGCTGCTCATACCGATGCGAGCT 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTGCGACGGAGCACGTGTCCTGTTTCTCCAATAACTCTGCTGCTCATACCGATGCGAGCT 720
Query 715 TTCATACATTCCTTCCCGCTCCACCGCCGTCACTGCCC-CCACGTCAGCCACGTCACGTC 773
| ||||||| ||||||||||||||| |||||||| ||| ||||||||||| |||||||||
Sbjct 721 TCCATACATACCTTCCCGCTCCACCACCGTCACT-CCCGCCACGTCAGCCTCGTCACGTC 779
Query 774 GGTGATGGCGTGGCGTTTGGTCAGTTTCTGGATTTGGGATCATCGGGACAGATTGATTTC 833
|| |||| ||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 780 GGCGATGACGTGGTGTTTGGTCAGTTTCTGGATTTGGGATCATCGGGACAGGTTAATTTC 839
Query 834 GATGCAGCAGCAGCAGCGTTCTTTCCGAATCTACCTTCTCTGCCTCCCACGGTTCTTCCT 893
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 840 GATGCAGCAGCAGC-G--TTCTTTCCGAATCTACCTTCTCTGCCTCCAACGGTTCTTCCT 896
Query 894 CCTCCTCCGTCATTTGCAATGTACGGTGGAGGCTCCCCCGCCGTGAGTGTGTGGCCGTTT 953
|||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||
Sbjct 897 CCTCCTCCGTCATTTGCAATGTTCGGTGGAGGCTCC---GCCGTGAGTGTCTGGCCGTTT 953
Query 954 ACTCTCTGATCGCCATGCGG 973
||||||||||| |||||||
Sbjct 954 GCTCTCTGATCGTCATGCGG 973
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36178648233
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5