BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15180.2 Length=1919 Score E Sequences producing significant alignments: (Bits) Value Ahg478950 jgi|Araly1|478950|fgenesh2_kg.3__1651__AT3G15180.1 1454 0.0 > Ahg478950 jgi|Araly1|478950|fgenesh2_kg.3__1651__AT3G15180.1 Length=1761 Score = 1454 bits (787), Expect = 0.0 Identities = 883/929 (95%), Gaps = 8/929 (1%) Strand=Plus/Plus Query 1 ATTCAGCTTGCTCGCAACGAAACATATTTTGTTGGaaaaaaaaaaCAAAGGAAATCGCCA 60 |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| Sbjct 1 ATTCAGCTTGCTCGCAACGAAACATATTTTACTGG---AAAAAAAC---GGAAATCGCCA 54 Query 61 TGGAAGACGTTAACCAGTTGTTCGATGCTGCTTTCGAGTTCGCACACTATCCCGGCGCTC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 55 TGGAAGACGTTAACCAGTTGTTCGATGCTGCTTTCGAGTTCGCACACTATCCCGGCGCTC 114 Query 121 AAAACGAAACTTCCGTTAAGGAATTCCTCGATCGCTTCCCTCTTCCTGTTATCTTCAATG 180 |||||||| | || || |||||||| |||||||||||||||||||| ||||||||||||| Sbjct 115 AAAACGAAGCCTCGGTCAAGGAATTTCTCGATCGCTTCCCTCTTCCCGTTATCTTCAATG 174 Query 181 CTTTGCAAACCGATCCGGATATACCAGGATTTGAAAACACGTTGGTGACTTGCTTGGAGA 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 175 CTTTGCAAACCGATCCGGATATACCAGGATTTGAAAACACGTTGGTGACTTGCTTAGAGA 234 Query 241 GGTTGTTTAAGACTAAGTATGGCGCTTCACTTATTCCTCAGTATATGCCTGTTCTGCAAG 300 || ||||||||||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 235 GGCTGTTTAAGACTAAGTATGGTGCCTCACTTATTCCTCAGTATATGCCTGTTCTGCAAG 294 Query 301 TTGGTCTCAAGGCAGATTCTGCAGTTGTGAAATCTCTGGCTTGCAAAACTGTTCTGTGTC 360 ||||||||||||||||||||||| | || ||||||||||||||||||||||| || |||| Sbjct 295 TTGGTCTCAAGGCAGATTCTGCAATAGTTAAATCTCTGGCTTGCAAAACTGTCCTTTGTC 354 Query 361 TCTTGGAGGATTGCGATACAAACGACGTTTCTTCTGTTCAGCTAGTTGTTAACAATGGCA 420 ||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||| Sbjct 355 TCTTGGAGGATTGCGATACAAACGATGTTTCTCCTGTTCAGCTAGTTGTTAGCAATGGCA 414 Query 421 TATACCCTCTTCTACTTGACTATATCATTAACAGCGATGATGAAGTTGCAAATGCTGCAA 480 ||||||||||||| ||||| |||||||||||||||||||||||||| ||| ||||||||| Sbjct 415 TATACCCTCTTCTGCTTGATTATATCATTAACAGCGATGATGAAGTGGCACATGCTGCAA 474 Query 481 GTGAGACAATTAAGAGCCTAGCTCGCTTTCC-AGATGCAATGTCCGTAATTTTCCCTTCT 539 |||||||||||||||| ||||| ||||| || | |||||||||| ||||||||||||||| Sbjct 475 GTGAGACAATTAAGAGTCTAGCACGCTTCCCTA-ATGCAATGTCTGTAATTTTCCCTTCT 533 Query 540 GAAACCAACGATCCTACACATCTTCGTAACCTTGCTGCAAGGTGTTCATCACTGGCACGA 599 |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 534 GAAACCAACGATGCTACACATCTTCGTAACCTTGCTGCAAGGTGTTCGTCACTGGCACGA 593 Query 600 GTCCGGGTTTTGTCGTTGATAGTGAAGCTTTTTTCGATTTCTCGACTTGTAGCTTCAGAA 659 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 594 GTCCGGGTTTTGTCTTTGATAGTGAAGCTTTTTTCGATTTCTCGACTTGTAGCTTCAGAA 653 Query 660 GTTAAGAAATCGGGGCTTCTTGATTTACTGGAGGCAGAAATGAAGGGTACAAAAGACACT 719 |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 654 ATTAAGAAATCAGGGCTTCTTGATTTGCTGGAGGCAGAAATGAAGGGTACAAAAGACACT 713 Query 720 CTTGTGATCTTAAATGTTCTGGAACTCTACTATGAGTTAATGGAAGTGGAGCACAGTTCA 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 714 CTTGTGATCTTAAATGTTCTGGAACTCTACTATGAGTTAATGGAAGTGGAGCACAGTTCA 773 Query 780 GAGTTCGTGCCACAAACATCACTTATTCAGCTGTTGTGTTCTATCATCAGTGGTACATCG 839 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 774 GAGTTCGTGCCACAAACTTCTCTTATTCAGCTGTTGTGTTCTATCATCAGTGGTACATCG 833 Query 840 ACGGGACCCTATGAAAAGTTAAGAGCAATGATGATAAGTGGCAGACTACTCTCAAAGGAA 899 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 834 ACGGGACCCTATGAAAAGTTAAGAGCAATGATGATTAGTGGCAGGCTACTCTCAAAGGAA 893 Query 900 AATATCTACAAAGTCGTGGAAGAAGCTAG 928 ||||||||||||||||||||||||||||| Sbjct 894 AATATCTACAAAGTCGTGGAAGAAGCTAG 922 Score = 1373 bits (743), Expect = 0.0 Identities = 813/846 (96%), Gaps = 8/846 (1%) Strand=Plus/Plus Query 1024 GTGTGAAGGCGTTAATTTCAGCTATTGATGGGAGTCTGGAGTCAGTTGAGATGAATGATA 1083 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 922 GTGTGAAGGCGTTAATTTCAGCTATTGATGGGAGTCTGGAGTCGGTGGAGATGAATGATA 981 Query 1084 CTGATGCACAGGAAGCTGCCATTGATGCACTTGGTCAGATGGGATCAACAACGAAGGGAG 1143 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 982 CTGATGCACAGGAAGCTGCCATTGATGCACTTGGTCAGATTGGATCAACAACGAAGGGAG 1041 Query 1144 CGGATCTTGTCCTTTCAACTTCACCTCCAGCTGCAAGACATGTTGTAGCTTCTGCCTTTG 1203 ||||| | || ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1042 CGGATATGGTGCTTTCAACTTCACTTCCAGCTGCAAGACATGTTGTAGCTTCTGCCTTTG 1101 Query 1204 ATCGTAATGCACATGGAAAACAGTTGGCTGCACTGCATGCACTGGCAAACATCGCAGGTG 1263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1102 ATCGTAATGCACATGGAAAACAGTTGGCTGCACTGCATGCACTGGCAAACATCGCAGGTG 1161 Query 1264 AAACACGACCTAAGAGCAACAGAATAGTTGATGGAAAAGCTGAAGAAAGCCTTAGATGTT 1323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1162 AAACACGACCTAAGAGCAACAGAATAGTTGATGGAAAAGCTGAAGAAAGCCTTAGATGTT 1221 Query 1324 TGATATACGACGCTGCAGCACAGAGCACAAAACTAACCCCATCCGGTTTATTCCTCTCAG 1383 |||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1222 TGATATACGATGTTGCAGCACAGAGCACAAAACTAACCCCATCTGGTTTATTCCTCTCAG 1281 Query 1384 TTCTTCAACAAAGCTCAGAGATTCGTCTTGCGGGTTATCGAACGTTAACAGCATTAGTGG 1443 |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| Sbjct 1282 TTCTTCAACAAAGCTCAGAGATTCGTCTTGCGGGTTATAGAACGTTAACAGCATTGGTGG 1341 Query 1444 CTCGGCCATGGTGCCTGGTGGAAATCTTGGCCAAAGAAGAGATAATAAACATAGTTACGG 1503 | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1342 CACGGCCATGGTGCCTGGTGGAAATCTTGTCCAAAGAAGAGATAATAAACATAGTTACGG 1401 Query 1504 ATGCAACCACTGAAACTGCAAAAATAGCAATGGAAGCAAGGTATAACTGCTGCAAAGCAA 1563 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1402 ATGCAACCACTGAAACTGCAAAAATAGCAATGGAAGCAAGGTATAACTGCTGCAAAGCAA 1461 Query 1564 TTCACGAAGCGTTCTTGTGTAGTAACTTTGTTGATGACCCTCGTCGTCTAAAAACCGGTG 1623 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1462 TTCACGAAGCGTTCTTGTGTAGTAACTTTGTTGATGACCCTCGTCGTAAAAAAACCGGTG 1521 Query 1624 ACAAGTTGCAAGAAGCTGTTCGAAGTGGACCATATATGTCGAAGAAGCACAGAGGCGCAC 1683 | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 1522 AAAAGTTGCAAGAAGCTGTTCGAAGTGGACCATACATGTCGAAGAAGCACAGAGGTGCAC 1581 Query 1684 GACCAGAAGTAATGACAGGCGAAGGATTTTAAAGACA-A-CTAAAGaaaaaaaGTTAAAA 1741 |||||||||||||||| |||||||||||||||||||| | |||||||||||| ||| ||| Sbjct 1582 GACCAGAAGTAATGACTGGCGAAGGATTTTAAAGACATAACTAAAGAAAAAA-GTTTAAA 1640 Query 1742 CTTCTTTGTTAACCAAAGTTTTTTATATCTTCTCTGGCTGTTCGATAAGTAAACTTTAGT 1801 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1641 CTTCTTTGTTAACCAAAGTTTTTTTTATCTTCTCTGGCTGTTCGATAAGTAAACTTTAGT 1700 Query 1802 TCTTTCTATAAACAACGAAGGCTAGGAGTAAACGTTTTGGCGGTTGAAATTTGTGTTCTT 1861 |||||||| || | | | |||||||| |||||||||||||||||||||||||||||||| Sbjct 1701 TCTTTCTA-AA-CGA-G--GGCTAGGACTAAACGTTTTGGCGGTTGAAATTTGTGTTCTT 1755 Query 1862 TAATTT 1867 || ||| Sbjct 1756 TACTTT 1761 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72104833785 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5