BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15180.2
Length=1919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478950 jgi|Araly1|478950|fgenesh2_kg.3__1651__AT3G15180.1 1454 0.0
> Ahg478950 jgi|Araly1|478950|fgenesh2_kg.3__1651__AT3G15180.1
Length=1761
Score = 1454 bits (787), Expect = 0.0
Identities = 883/929 (95%), Gaps = 8/929 (1%)
Strand=Plus/Plus
Query 1 ATTCAGCTTGCTCGCAACGAAACATATTTTGTTGGaaaaaaaaaaCAAAGGAAATCGCCA 60
|||||||||||||||||||||||||||||| ||| |||||||| |||||||||||
Sbjct 1 ATTCAGCTTGCTCGCAACGAAACATATTTTACTGG---AAAAAAAC---GGAAATCGCCA 54
Query 61 TGGAAGACGTTAACCAGTTGTTCGATGCTGCTTTCGAGTTCGCACACTATCCCGGCGCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 TGGAAGACGTTAACCAGTTGTTCGATGCTGCTTTCGAGTTCGCACACTATCCCGGCGCTC 114
Query 121 AAAACGAAACTTCCGTTAAGGAATTCCTCGATCGCTTCCCTCTTCCTGTTATCTTCAATG 180
|||||||| | || || |||||||| |||||||||||||||||||| |||||||||||||
Sbjct 115 AAAACGAAGCCTCGGTCAAGGAATTTCTCGATCGCTTCCCTCTTCCCGTTATCTTCAATG 174
Query 181 CTTTGCAAACCGATCCGGATATACCAGGATTTGAAAACACGTTGGTGACTTGCTTGGAGA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 175 CTTTGCAAACCGATCCGGATATACCAGGATTTGAAAACACGTTGGTGACTTGCTTAGAGA 234
Query 241 GGTTGTTTAAGACTAAGTATGGCGCTTCACTTATTCCTCAGTATATGCCTGTTCTGCAAG 300
|| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 235 GGCTGTTTAAGACTAAGTATGGTGCCTCACTTATTCCTCAGTATATGCCTGTTCTGCAAG 294
Query 301 TTGGTCTCAAGGCAGATTCTGCAGTTGTGAAATCTCTGGCTTGCAAAACTGTTCTGTGTC 360
||||||||||||||||||||||| | || ||||||||||||||||||||||| || ||||
Sbjct 295 TTGGTCTCAAGGCAGATTCTGCAATAGTTAAATCTCTGGCTTGCAAAACTGTCCTTTGTC 354
Query 361 TCTTGGAGGATTGCGATACAAACGACGTTTCTTCTGTTCAGCTAGTTGTTAACAATGGCA 420
||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||
Sbjct 355 TCTTGGAGGATTGCGATACAAACGATGTTTCTCCTGTTCAGCTAGTTGTTAGCAATGGCA 414
Query 421 TATACCCTCTTCTACTTGACTATATCATTAACAGCGATGATGAAGTTGCAAATGCTGCAA 480
||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 415 TATACCCTCTTCTGCTTGATTATATCATTAACAGCGATGATGAAGTGGCACATGCTGCAA 474
Query 481 GTGAGACAATTAAGAGCCTAGCTCGCTTTCC-AGATGCAATGTCCGTAATTTTCCCTTCT 539
|||||||||||||||| ||||| ||||| || | |||||||||| |||||||||||||||
Sbjct 475 GTGAGACAATTAAGAGTCTAGCACGCTTCCCTA-ATGCAATGTCTGTAATTTTCCCTTCT 533
Query 540 GAAACCAACGATCCTACACATCTTCGTAACCTTGCTGCAAGGTGTTCATCACTGGCACGA 599
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 534 GAAACCAACGATGCTACACATCTTCGTAACCTTGCTGCAAGGTGTTCGTCACTGGCACGA 593
Query 600 GTCCGGGTTTTGTCGTTGATAGTGAAGCTTTTTTCGATTTCTCGACTTGTAGCTTCAGAA 659
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GTCCGGGTTTTGTCTTTGATAGTGAAGCTTTTTTCGATTTCTCGACTTGTAGCTTCAGAA 653
Query 660 GTTAAGAAATCGGGGCTTCTTGATTTACTGGAGGCAGAAATGAAGGGTACAAAAGACACT 719
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 654 ATTAAGAAATCAGGGCTTCTTGATTTGCTGGAGGCAGAAATGAAGGGTACAAAAGACACT 713
Query 720 CTTGTGATCTTAAATGTTCTGGAACTCTACTATGAGTTAATGGAAGTGGAGCACAGTTCA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CTTGTGATCTTAAATGTTCTGGAACTCTACTATGAGTTAATGGAAGTGGAGCACAGTTCA 773
Query 780 GAGTTCGTGCCACAAACATCACTTATTCAGCTGTTGTGTTCTATCATCAGTGGTACATCG 839
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 774 GAGTTCGTGCCACAAACTTCTCTTATTCAGCTGTTGTGTTCTATCATCAGTGGTACATCG 833
Query 840 ACGGGACCCTATGAAAAGTTAAGAGCAATGATGATAAGTGGCAGACTACTCTCAAAGGAA 899
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 834 ACGGGACCCTATGAAAAGTTAAGAGCAATGATGATTAGTGGCAGGCTACTCTCAAAGGAA 893
Query 900 AATATCTACAAAGTCGTGGAAGAAGCTAG 928
|||||||||||||||||||||||||||||
Sbjct 894 AATATCTACAAAGTCGTGGAAGAAGCTAG 922
Score = 1373 bits (743), Expect = 0.0
Identities = 813/846 (96%), Gaps = 8/846 (1%)
Strand=Plus/Plus
Query 1024 GTGTGAAGGCGTTAATTTCAGCTATTGATGGGAGTCTGGAGTCAGTTGAGATGAATGATA 1083
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 922 GTGTGAAGGCGTTAATTTCAGCTATTGATGGGAGTCTGGAGTCGGTGGAGATGAATGATA 981
Query 1084 CTGATGCACAGGAAGCTGCCATTGATGCACTTGGTCAGATGGGATCAACAACGAAGGGAG 1143
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 982 CTGATGCACAGGAAGCTGCCATTGATGCACTTGGTCAGATTGGATCAACAACGAAGGGAG 1041
Query 1144 CGGATCTTGTCCTTTCAACTTCACCTCCAGCTGCAAGACATGTTGTAGCTTCTGCCTTTG 1203
||||| | || ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1042 CGGATATGGTGCTTTCAACTTCACTTCCAGCTGCAAGACATGTTGTAGCTTCTGCCTTTG 1101
Query 1204 ATCGTAATGCACATGGAAAACAGTTGGCTGCACTGCATGCACTGGCAAACATCGCAGGTG 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 ATCGTAATGCACATGGAAAACAGTTGGCTGCACTGCATGCACTGGCAAACATCGCAGGTG 1161
Query 1264 AAACACGACCTAAGAGCAACAGAATAGTTGATGGAAAAGCTGAAGAAAGCCTTAGATGTT 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AAACACGACCTAAGAGCAACAGAATAGTTGATGGAAAAGCTGAAGAAAGCCTTAGATGTT 1221
Query 1324 TGATATACGACGCTGCAGCACAGAGCACAAAACTAACCCCATCCGGTTTATTCCTCTCAG 1383
|||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1222 TGATATACGATGTTGCAGCACAGAGCACAAAACTAACCCCATCTGGTTTATTCCTCTCAG 1281
Query 1384 TTCTTCAACAAAGCTCAGAGATTCGTCTTGCGGGTTATCGAACGTTAACAGCATTAGTGG 1443
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct 1282 TTCTTCAACAAAGCTCAGAGATTCGTCTTGCGGGTTATAGAACGTTAACAGCATTGGTGG 1341
Query 1444 CTCGGCCATGGTGCCTGGTGGAAATCTTGGCCAAAGAAGAGATAATAAACATAGTTACGG 1503
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1342 CACGGCCATGGTGCCTGGTGGAAATCTTGTCCAAAGAAGAGATAATAAACATAGTTACGG 1401
Query 1504 ATGCAACCACTGAAACTGCAAAAATAGCAATGGAAGCAAGGTATAACTGCTGCAAAGCAA 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 ATGCAACCACTGAAACTGCAAAAATAGCAATGGAAGCAAGGTATAACTGCTGCAAAGCAA 1461
Query 1564 TTCACGAAGCGTTCTTGTGTAGTAACTTTGTTGATGACCCTCGTCGTCTAAAAACCGGTG 1623
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1462 TTCACGAAGCGTTCTTGTGTAGTAACTTTGTTGATGACCCTCGTCGTAAAAAAACCGGTG 1521
Query 1624 ACAAGTTGCAAGAAGCTGTTCGAAGTGGACCATATATGTCGAAGAAGCACAGAGGCGCAC 1683
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1522 AAAAGTTGCAAGAAGCTGTTCGAAGTGGACCATACATGTCGAAGAAGCACAGAGGTGCAC 1581
Query 1684 GACCAGAAGTAATGACAGGCGAAGGATTTTAAAGACA-A-CTAAAGaaaaaaaGTTAAAA 1741
|||||||||||||||| |||||||||||||||||||| | |||||||||||| ||| |||
Sbjct 1582 GACCAGAAGTAATGACTGGCGAAGGATTTTAAAGACATAACTAAAGAAAAAA-GTTTAAA 1640
Query 1742 CTTCTTTGTTAACCAAAGTTTTTTATATCTTCTCTGGCTGTTCGATAAGTAAACTTTAGT 1801
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1641 CTTCTTTGTTAACCAAAGTTTTTTTTATCTTCTCTGGCTGTTCGATAAGTAAACTTTAGT 1700
Query 1802 TCTTTCTATAAACAACGAAGGCTAGGAGTAAACGTTTTGGCGGTTGAAATTTGTGTTCTT 1861
|||||||| || | | | |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1701 TCTTTCTA-AA-CGA-G--GGCTAGGACTAAACGTTTTGGCGGTTGAAATTTGTGTTCTT 1755
Query 1862 TAATTT 1867
|| |||
Sbjct 1756 TACTTT 1761
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72104833785
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5