BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15200.1
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929307 jgi|Araly1|929307|scaffold_301764.1 2045 0.0
> Ahg929307 jgi|Araly1|929307|scaffold_301764.1
Length=1595
Score = 2045 bits (1107), Expect = 0.0
Identities = 1436/1588 (90%), Gaps = 50/1588 (3%)
Strand=Plus/Plus
Query 1 ATGGGAGGGAAAAACAAAATTGAAATCTTGTTTCAGCTACAAAGTGCTCTATCGCGGCGC 60
||||||||||||||||||||| |||||||| || | | | |||||||| |||||||
Sbjct 21 ATGGGAGGGAAAAACAAAATTCAAATCTTG-TT----T-C--A-TGCTCTATGGCGGCGC 71
Query 61 CGGATCTCATCATTGGTCGAT-TTTCGCCGT-GTTTTTCCTCCCGAGACACCGAATCATA 118
|||||||| || || || || || | || | | || | | | | ||| |||||||
Sbjct 72 CGGATCTCTTC-TTCCTC-ATCCTT-G--GTGGATCTT-C-GCAGTG-TACCTAATCATA 123
Query 119 AGAACAATATCACTCTCTCCAGGTTCCACTTTCT-GG----------G-TACACACTTTC 166
||||||| ||||||||||||||||| ||||| || || | |||||||||||
Sbjct 124 AGAACAACATCACTCTCTCCAGGTTTCACTTGCTGGGTATTAATCAAGCTACACACTTTC 183
Query 167 TTCATTCTCTTGGAGCTCCCGACAAATTTCCAAATAGATTCAACGACGACAAAGACAAGC 226
|||||||||||| |||||||||||||||||| || | | | | | ||| |
Sbjct 184 TTCATTCTCTTGCAGCTCCCGACAAATTTCC---TA-A-T----G--G----ATTCAATC 228
Query 227 AATCTGCTCTTGATGTTCATAACATCATAAAGCATCACCGTGGAAGTTCACCTGAAAAGA 286
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 229 AATCTGCTGTTGATGTTCATAACATCATAAAGCATCACCGTGGAAGTTCACCTGAAGAGA 288
Query 287 TTAAGCGGATTCTCGATAAGTGCGGGATAGACTTAACCGAAGAGCTTGTTTTAGAAGTGG 346
|| |||||||||||||||||||||||||| | || ||||||||||| ||||| ||||||
Sbjct 289 TTGAGCGGATTCTCGATAAGTGCGGGATACAATTGACCGAAGAGCTGGTTTTTGAAGTGC 348
Query 347 TTAATCGGAATCGATCTGATTGGAAACCAGCTTATATACTTTCTCAATTGGTCGTTAAAC 406
|| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 349 TTCATCGGAATCGATCTGATTGGAAACCAGCTTATATACTTTCTCGATTGATCGTTAAAC 408
Query 407 AATCTGTTCATCTATCTAGCTCGAT-GTTGTATAACGAGATTCTCGATGTTCTTGGGAAA 465
| |||||| || |||||||||| | ||| || |||||||||||||||||||||||||||
Sbjct 409 ATTCTGTTTATATATCTAGCTCCTTGGTT-TACAACGAGATTCTCGATGTTCTTGGGAAA 467
Query 466 ATGCGGCGATTTGAAGAGTTTCACCAAGTGTTCGACGAAATGTCTAAGAGAGATGGATTT 525
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 468 ATGCGGCGCTTTGAAGAGTTACACCAAGTGTTCGACGAAATGTCTAAGAGAGATGGATTT 527
Query 526 GTTAACGAGAAGACGTACGAAGTTTTGTTAAACCGTTACGCTGCTGCACATAAAGTTGAT 585
||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 528 GTTGACGAGAAGACGTATGAAGTTTTGTTAAACCGATACGCTGCTGCACACAAAGTTGAT 587
Query 586 GAAGCTGTAGGAGTCTTTGAGAGGAGGAAAGAGTTTGGGATAGATGATGATCTGGTTGCG 645
||||| |||||||| ||||||||||||| ||||||||||||||| |||||| |||||||
Sbjct 588 GAAGCAGTAGGAGTGTTTGAGAGGAGGAGAGAGTTTGGGATAGAGGATGATTTGGTTGCA 647
Query 646 TTTCATGGGCTTTTGATGTGGTTGTGTAGGTATAAGCATGTTGAATTTGCGGAAACTTTG 705
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 648 TTTCATGGGCTTTTGATGTGGTTGTGTAGGTATAAGCATGTCGAATTTGCGGAAACTTTG 707
Query 706 TTTTGCTCTCGTAGAAGAGAGTTTGGTTGCGATA-TAAAAGCGATGAATATGATTCTCAA 764
|| ||||||||||||||||||||||| ||||||| | || ||| ||| || ||||||||
Sbjct 708 TTCTGCTCTCGTAGAAGAGAGTTTGGCTGCGATATTCGAA-CGAGGAACATTATTCTCAA 766
Query 765 CGGGTGGTGTGTATTAGGAAATGTTCATGAAGCTAAGAGGTTTTGGAAAGATATCATTGC 824
||| |||||||| || ||||||||||||||||| |||||| ||||||||||||| |||||
Sbjct 767 CGGTTGGTGTGTTTTGGGAAATGTTCATGAAGCAAAGAGGATTTGGAAAGATATAATTGC 826
Query 825 TTCTAAATGCAGGCCAGATGTTGTTAGCTATGGGACAATGATAAATGCATTGACGAAGAA 884
||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 827 TTCTAAATGCAAGCCAGATGTTGTCAGCTACGGGACAATGATAAATGCATTGACGAAGAA 886
Query 885 GGGGAAATTGGGAAAGGCTATGGAATTATACAGAGCAATGTGGGACACCAGAAGAAACCC 944
||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||
Sbjct 887 GGGGAAATTGGGAAAGGCTATGGAATTATACAGAGCATTGTGGGAAACCGGAAGAAATCC 946
Query 945 GGATGTTAAAATCTGCAATAACGTTATTGATGCTTTGTGTTTCAAGAAGAGAATCCCTGA 1004
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 947 GGATGTTAAAATCTGCAATAACGTTATTGATGCATTGTGTTTTAAGAAGAGAATCCCAGA 1006
Query 1005 GGCTCTTGAAGTATTCAGGGAGATTAGTGAGAAAGGTCCCGACCCGAATGTTGTGACGTA 1064
||||||||||| ||||| |||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1007 GGCTCTTGAAGAATTCAAGGAGATGAGTGAGAAAGGTCCCTCCCCGAATGTTGTGACGTA 1066
Query 1065 TAACTCACTTTTGAAGCATCTCTGCAAGATAAGGAGAACTGAGAAAGTTTGGGAGCTAGT 1124
||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1067 CAACTCGCTTTTAAAGCATCTTTGCAAGATAAGGAGAACTGAGAAAGTTTGGGAGCTGGT 1126
Query 1125 GGAAGAGATGGAACTTAAAGGTGGTAGTTGTTCGCCTAACGATGTGACATTCAGTTACTT 1184
|||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 1127 GGAAGAGATGGAACATAAAGGTGGTACTTGTTCGCCTAACGATGTGACATTCGGTTACTT 1186
Query 1185 GCTCAAGTATTCGCAGAGATCGAAGGATGTTGACATAGTTTTGGAAAGGATGGCAAAGAA 1244
||| |||||||||||||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 1187 GCTTAAGTATTCGCAGAGATCGAAGGATGTTGACGCAGTTCTGGAAAGGATGGCGAAGAA 1246
Query 1245 CAAGTGTGAAATGACAAGCGATTTGTACAATTTGATGTTTAGGTTATATGTGCAATGGGA 1304
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1247 CAAGTGTGAAATGACAAGCGACTTGTACAATCTGATGTTTAGGTTATATGTGCAATGGGA 1306
Query 1305 CAAggaagagaaagtgagagagatatggagtgagatggagagaagtggattaggaccaga 1364
||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 1307 CAATGAAGAGAAAGTGAGAGAGATATGGGGTGAGATGGAGAGAATTGGATTAGGACCAGA 1366
Query 1365 tcagagaaCATATACTATTAGGATTCATGGTCTGCACACAAAGGGGAAAATTGGAGAAGC 1424
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1367 TCAGAGAACATATACTATTAGAATTCATGGTCTGCACACAAAGGGGAAAATTGGAGAAGC 1426
Query 1425 ATTGAGTTACTTTCAAGAGATGATGTCAAAAGGAATGGTACCAGAGCCAAGAACTGAGAT 1484
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1427 ATTGAGTTACTTTCAAGAGATGATGTCTAAAGGAATGGTGCCAGAGCCAAGAACTGAGAT 1486
Query 1485 GTTACTGAACCAGAACAAGACCAAGCCAAGAGTAGAAGACAAAATGCTTAGATCGAACTT 1544
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1487 GTTACTGAACAAGAACAAGACCAAGCCAAGAGTAGAAGACAAAATGCTTAGATCAAACTT 1546
Query 1545 AACAAGCGAAGAGTCTGAAAGCGACTAA 1572
||||||||||||||||||||||||||||
Sbjct 1547 AACAAGCGAAGAGTCTGAAAGCGACTAA 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58887518770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5