BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15210.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929308 jgi|Araly1|929308|scaffold_301765.1 1018 0.0
> Ahg929308 jgi|Araly1|929308|scaffold_301765.1
Length=702
Score = 1018 bits (551), Expect = 0.0
Identities = 662/714 (93%), Gaps = 14/714 (2%)
Strand=Plus/Plus
Query 28 CTCTCTAATCTATCTATCCGAGA-ATGGCCAAGATGGGCTTGAAACCCGACCCGGCTACT 86
|||||| ||| ||| ||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1 CTCTCT-CTCTTTCTCTCC-AAATATGGCCAAGATGGGCTTGAAACCCGACCCGGCTACT 58
Query 87 ACTAACCAGACCCACAATAATGCCAAGGAGATTCGTTACAGAGGCGTTAGGAAGCGTCCT 146
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACTAACCCGACCAACAATAATGCCAAGGAGATTCGTTACAGAGGCGTTAGGAAGCGTCCT 118
Query 147 TGGGGCCGTTATGCCGCCGAGATCCGAGATCCGGGCAAGAAAACCCGCGTCTGGCTTGGC 206
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 119 TGGGGCCGTTATGCCGCCGAGATCCGAGATCCGGGTAAGAAAACCCGTGTCTGGCTTGGT 178
Query 207 ACTTTCGATACGGCTGAAGAGGCGGCGCGTGCTTACGATACGGCGGCGCGTGATTTTCGT 266
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 179 ACTTTCGATACGGCTGAAGAGGCGGCGCGTGCTTATGATACGGCGGCGCGTGATTTTCGT 238
Query 267 GGTGCTAAGGCTAAGACCAATTTCCCAACTTTTCTCGAGCTGAGTGACCAGAAGGTCCCT 326
|| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||
Sbjct 239 GGAGCTAAGGCTAAGACCAATTTCCCGACTTTTCTCGAGCTGAGTGATCAGAAGGTGCCT 298
Query 327 ACCGGTTTCGCGCGTAGCCCTAGCCAGAGCAGCACGCTCGACTGTGCTTCTCCTCCGACG 386
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 299 ACCGGTTTCGCGCGTAGCCCTAGCCAGAGCAGCACGCTTGACTGTGCTTCTCCTCCGACG 358
Query 387 TTAGTTGTGCCTTCAGCGACGGCTGGGAATGTTCCCCCGCAGCTCGAGCTTAGTCTCGGC 446
| |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 359 GTGGTTGTGCCATCAGCGACGGCTGGGAATGTTCCGCCGCAGCTCGAGCTTAGCCTCGG- 417
Query 447 GGAGGAGGCGGCGGCTCGTGTTATCAGATCCCGAT-GTCGCGTCCTGTCTACTTTTTGGA 505
|||||||| || | || | ||||||||||||| | ||||||||||||||||||||||
Sbjct 418 --AGGAGGCG-CG--T-GT-T-ATCAGATCCCGATTG-CGCGTCCTGTCTACTTTTTGGA 468
Query 506 CCTGATGGGGATCGGTAACGTAGGTCGTGGTCAGCCTCCTCCTGTGACATCGGCGTTTAG 565
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 469 CCTGATGGGAATCGGAAACGTAGGTCGTGGTCAGCCTCCTCCTGTGACGTCGGCGTTTAG 528
Query 566 ATCGCCGGTGGTGCATGTTGCGACGAAGATGGCTTGTGGTGCCCAAAGCGACTCTGATTC 625
|||| |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||
Sbjct 529 ATCGTCGGTGGTGCATGTTCCGACGAAGATGGCTTGTGGGGCCCAGAGCGACTCTGATTC 588
Query 626 GTCATCGGTCGTTGATTTCGAAGGTGGGATGGAGAAGAGATCTCAGCTGTTAGATCTAGA 685
||| || |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||
Sbjct 589 GTCTTCCGTCGTTGATTTCGAAGGTGGAATGGAGAAGAGATCTCAGCCGTTCGATCTAGA 648
Query 686 TCTTAATTTGCCTCCTCCATCGGAACAGGCCTGAGCTTTTAACGGTGTCGTTTC 739
||| || |||||||| || |||||||| |||||||||| |||||||||||||||
Sbjct 649 TCTAAACTTGCCTCCCCCGTCGGAACAAGCCTGAGCTTCTAACGGTGTCGTTTC 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5