BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15220.1
Length=2574
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929309 jgi|Araly1|929309|scaffold_301766.1 3386 0.0
Ahg474438 jgi|Araly1|474438|fgenesh2_kg.1__4392__AT1G53165.1 1707 0.0
> Ahg929309 jgi|Araly1|929309|scaffold_301766.1
Length=2122
Score = 3386 bits (1833), Expect = 0.0
Identities = 2028/2123 (96%), Gaps = 9/2123 (0%)
Strand=Plus/Plus
Query 180 GTTTTTCCTTGTATGTGGAGATGGACGATGTTGCGGGTTTACAAGAGGCAGCTGGAGCCA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 GTTTTTCCTTGTATGTGGAGATGGACGATGTTGCGGGTTTACAAGAGGCAGCTGGAGCCA 61
Query 240 GATTTAGCCAGATTGAGTTGATTGGAAGAGGCTCTTTTGGTGATGTCTATAAAGCGTTTG 299
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 62 GATTTAGCCACATTGAGTTGATTGGAAGAGGTTCTTTTGGTGATGTCTATAAAGCGTTTG 121
Query 300 ATAAGGACCTCAATAAAGAAGTTGCCATTAAAGTAATCGACCTGGAAGAATCAGAAGATG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 ATAAGGACCTCAATAAAGAAGTTGCCATTAAAGTAATCGACCTGGAAGAATCAGAAGATG 181
Query 360 AGATCGAAGATATTCAGAAGGAAATTTCAGTATTGTCACAATGTCGTTGCCCATATATCA 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 182 AGATCGAAGATATTCAGAAGGAAATTTCAGTATTGTCACAATGCCGTTGCCCATATATCA 241
Query 420 CCGAATACTATGGTTCTTACCTTCATCAGACCAAGTTGTGGATCATCATGGAATATATGG 479
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 242 CCGAATACTATGGTTCTTACCTTCATCAGACCAAGTTGTGGATCATTATGGAATATATGG 301
Query 480 CCGGTGGCTCTGTTGCTGATCTTCTTCAATCTAATAATCCGTTGGATGAAACATCAATCG 539
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 302 CCGGTGGCTCTGTTGCTGATCTTCTTCAATCTAGTAATCCATTGGATGAAACATCAATCG 361
Query 540 CTTGTATCACACGCGATTTGCTTC-ATGCTGTTGAATATCTGCATAATGAGGGAAAGATC 598
||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 362 CTTGTATCACACGCGATCTGCTTCTA-GCTGTTGAATATCTGCATAATGAGGGAAAGATC 420
Query 599 CACAGAGACATTAAAGCTGCGAATATTTTGTTGAGCGAGAATGGCGATGTTAAGGTGGCG 658
||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 421 CACAGAGACATCAAAGCTGCTAATATTTTGTTGACCGAGAATGGCGATGTTAAGGTGGCG 480
Query 659 GACTTTGGTGTGTCTGCTCAGCTAACGCGGACAATATCAAGAAGGAAGACTTTTGTAGGA 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GACTTTGGTGTGTCTGCTCAGCTAACGCGGACAATATCAAGAAGGAAGACTTTTGTAGGA 540
Query 719 ACCCCATTTTGGATGGCACCAGAAGTTATTCAGAACTCAGAAGGGTATAATGAGAAGGCA 778
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 541 ACCCCATTTTGGATGGCACCAGAAGTGATTCAGAACTCAGAAGGGTATAACGAGAAGGCA 600
Query 779 GATATTTGGTCGCTCGGAATAACAGTTATTGAGATGGCAAAAGGAGAACCTCCCCTAGCT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATATTTGGTCGCTCGGAATAACAGTTATTGAGATGGCAAAAGGAGAACCTCCCCTAGCT 660
Query 839 GACCTTCATCCCATGAGAGTGCTTTTTATCATTCCTCGAGAAACTCCACCACAGTTAGAT 898
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 661 GACCTTCATCCCATGAGAGTGCTTTTTATCATTCCTCGAGAAAATCCACCTCAGTTAGAT 720
Query 899 GAGCATTTTTCCCGTCAAGTAAAGGAGTTTGTTTCATTATGCCTGAAGAAGGCCCCTGCC 958
|||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 721 GAGCATTTTTCCCGTCCAGTAAAGGAGTTTGTTTCATTATGCTTGAAGAAGGTCCCTGCT 780
Query 959 GAGAGACCAAGTGCCAAAGAACTTATTAAACACAGATTTATTAAGAATGCTAGGAAAAGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 781 GAGAGACCAAGTGCCAAAGAACTTATTAAACACAGATTTATTAAGAATGCTAGAAAAAGT 840
Query 1019 CCGAAACTTCTTGAGAGGATAAGAGAGCGGCCAAAGTACCAAGTAAAAGAAGATGAAGAG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CCGAAACTTCTTGAGAGGATAAGAGAGCGGCCAAAGTACCAAGTAAAAGAAGATGAAGAG 900
Query 1079 ACTCCTAGGAATGGGGCCAAAGCTCCAGTTGAATCATCTGGTACTGTTAGGATAGCTAGA 1138
|||||||||||||| |||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 901 ACTCCTAGGAATGGTCCCAAAGCTCCAGTTGACTCATCTGGTACTGTTAGGGTGGCTAGA 960
Query 1139 GATGAAAGAAGCCAAGGCGCGCCTGGAT--A--TA--GTTTTCAGGGGAATACCGTCAAA 1192
|||||||||||||||||| | ||||||| | || |||||||||||||||||||||||
Sbjct 961 GATGAAAGAAGCCAAGGCACTCCTGGATCTAGCTACAGTTTTCAGGGGAATACCGTCAAA 1020
Query 1193 AATGCTGGATGGGACTTTACCGTTGGGGGGTCACAGAGTATTGGAACAGTTCGTGCTTTA 1252
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1021 AATGCTGGATGGGACTTTAGCGTTGGGGGGTCACAGAGTATTGGAGCAGTTCGTGCTTTA 1080
Query 1253 AAACCTCCTCAAGCAAGGGAGAGGCGCCAAGAAGTTTCTCCTAATCGGATTTCGCAAAGA 1312
||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||| ||
Sbjct 1081 AAACCTCCTCAAGCAAGGGAGAGGCGCCACGAAGTTTCTTCTAATCAGATTTCGCAACGA 1140
Query 1313 ACAACAAGACCTAGTGGTAATCAATGGTCATCTGCGACTGGGAGTACAATTTCTGAAGCT 1372
||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||
Sbjct 1141 ACAACAAGAGCTAGTGGTAATCAGTGGTCATCTTCGACTGGTAGTACAATTTCTGAAGCC 1200
Query 1373 TCTGAAGGAGGTTTTGTCAGAAGACACCCTTTTCAGAATGACCATGAAGATGGCTTCCAC 1432
|||||| |||||||||| |||||||| |||||||||||||| || |||||||||||||||
Sbjct 1201 TCTGAAAGAGGTTTTGTAAGAAGACATCCTTTTCAGAATGATCACGAAGATGGCTTCCAC 1260
Query 1433 GAAGAGGACGATTCATCGCTCAGTGGATCGGGAACTGTTGTCATAAGAACCCCAAGAAGT 1492
||||| |||||||||||||||| ||||||||||||||| ||||||||| |||||||||||
Sbjct 1261 GAAGAAGACGATTCATCGCTCACTGGATCGGGAACTGTCGTCATAAGAGCCCCAAGAAGT 1320
Query 1493 TCTCAATCATCTTCAGTATTCCGTGAACCAAGCTCTGGGTCTAGCGGCAGGTATGCAGCT 1552
||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||| ||
Sbjct 1321 TCTCAATCATCTTCAATATTCCGTGAACAAAGCTCTGTGTCTAGCGGCAGGTATGCACCT 1380
Query 1553 TTTGATGATGCTTCAGCAAGTGGAACTGTTGTTGTCCGTGGACAGTACGATGACTCTGGA 1612
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1381 TTTGATGATGCTTCAGCAAGTGGAACTGTTGTTGTTCGTGGGCAGTACGATGACTCTGGA 1440
Query 1613 TCACCTCGAACCCCGAAATCTAGACTAGGGATTCAAGAGAGAACTTCGAGTGCATCAGAA 1672
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 1441 TCACCTCGAACCCCAAAATCTAGACTAGGGATTCAAGAGAGAACTTCAAGTGCCTCCGAA 1500
Query 1673 GATAGCAACGCAAATCTCGCGGAGGCAAAGGCAGCACTCGACGCAGGTTTCAGAAGGGGT 1732
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 1501 GATAGCAACGTAAATCTCGCGGAGGCAAAGGCAGCACTTGACGCAGGTTTCAGAAAGGGA 1560
Query 1733 AAGGCTAGAGAAAGACTTGGAATGGGAAATAACAATAATGATGGGAAGGTTAACAGAAGA 1792
|| ||||||||||||||||||||||| || ||||||||||||||||||||| || | |||
Sbjct 1561 AATGCTAGAGAAAGACTTGGAATGGGGAAGAACAATAATGATGGGAAGGTTCACCGGAGA 1620
Query 1793 AGGGAGCAAATGGCAGATGATTCTGACTATTCAAGAAATTCCGGCGATAAGTCTAGTAAA 1852
||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct 1621 AGGGACCAAACGGCAGATGATTCTGATTATTCAAGAAATTCCGGCGTTAAGTCTAGTAAA 1680
Query 1853 CAAAAAGTAGTTCCAAGGTCAGAACAAGTGAGTGATGAAGAAGATGACTCCATATGGGAA 1912
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1681 CAAAAAGCACTTCCAAGGTCAGAACAAGTGAGTGATGAAGAAGATGACTCCATATGGGAA 1740
Query 1913 TCATTGCCTGCATCATTGTCAGTGTTGCTCATACCGTCCCTAAAAGAAGCTCTTGGTGAC 1972
||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||
Sbjct 1741 TCATTGCCTGCATCATTGTCAATATTGCTCATACCGTCCCTAAAAGAGGCTCTTGGTGAC 1800
Query 1973 GATTCTAAAGAATCTACTGTGCGTACAGTGTCGAGATCCCTTGTGATGATGGAACGTGAA 2032
||||| |||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1801 GATTCAAAAGAATCTATTGGGCGTACAGTGTCGAGATCCCTAGTGATGATGGAACGTGAA 1860
Query 2033 AAGCCTGGTTCTTGTGAAGCTTTTGTTGCCAAGCTGATTGAACTTTTGGGAAGTTCAAAA 2092
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1861 AAGCCTGGTTCTTGTGAAGCTTTTGTTGCCAAGCTGATTGAACTTTTGGGAAGTTCAAAA 1920
Query 2093 GAAGCTTCGGTGAAAGAATTGCACGATATGGCGGTCTGTGTTTTTGCCAAGACCACACCC 2152
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1921 GAAGCTTCGGTGAAAGAATTGCACGATATGGCGGTCCGTGTTTTTGCCAAGACCACACCC 1980
Query 2153 GACAATGCAGAGAACAAAATGAAACAAGCTAACAAGGAGTTTAGTTCCAACACAAATGTT 2212
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1981 AACGATGCAGAGAACAAAAGGAAACAAGCTAACAAGGAGTTTAGTTCCAACACAAACGTT 2040
Query 2213 AGCCCACTCGGCAGATTCTTACTCTCAAGATGGCTAGGCCAATCATCACGTGATCTTTAA 2272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2041 AGCCCACTCGGCAGATTCTTACTCTCAAGATGGCTAGGCCAATCATCACGTGATCTTTAA 2100
Query 2273 TCCCCCACCCTGAGACAACCTAC 2295
|| |||||| ||||||| |||||
Sbjct 2101 TCTCCCACC-TGAGACAGCCTAC 2122
> Ahg474438 jgi|Araly1|474438|fgenesh2_kg.1__4392__AT1G53165.1
Length=2547
Score = 1707 bits (924), Expect = 0.0
Identities = 1801/2211 (81%), Gaps = 114/2211 (5%)
Strand=Plus/Plus
Query 188 TTGTATGTGGAGATGGACGATGTTGCGGGTTTACAAGAGGCAGCTGGAGCCAGATTTAGC 247
|||| |||||| ||||| |||||||| ||||||||||||||||||||| |||||||||||
Sbjct 195 TTGT-TGTGGAAATGGATGATGTTGCTGGTTTACAAGAGGCAGCTGGAACCAGATTTAGC 253
Query 248 CAGATTGAGTTGATTGGAAGAGGCTCTTTTGGTGATGTCTATAAAGCGTTTGATAAGGAC 307
||| ||||||| || |||||||| || |||||||||||||| ||||||||||||| ||
Sbjct 254 CAGTTTGAGTTAATCGGAAGAGGATCGTTTGGTGATGTCTACAAAGCGTTTGATACGGTG 313
Query 308 CTCAATAAAGAAGTTGCCATTAAAGTAATCGACCTGGAAGAATCAGAAGATGAGATCGAA 367
|| || ||||| |||||||||||||| || || |||||||||||||||| ||||| |||
Sbjct 314 CTTAACAAAGATGTTGCCATTAAAGTTATTGATTTGGAAGAATCAGAAGACGAGATTGAA 373
Query 368 GATATTCAGAAGGAAATTTCAGTATTGTCACAATGTCGTTGCCCATATATCACCGAATAC 427
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 374 GATATACAGAAGGAAATTTCAGTATTGTCACAATGCCGTTGCCCATATATTACCGAATAC 433
Query 428 TATGGTTCTTACCTTCATCAGACCAAGTTGTGGATCATCATGGAATATATGGCCGGTGGC 487
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 434 TATGGTTCTTACCTTCACCAGACCAAGTTATGGATCATCATGGAATATATGGCTGGTGGC 493
Query 488 TCTGTTGCTGATCTTCTTCAATCTAATAATCCGTTGGATGAAACATCAATCGCTTGTATC 547
|| |||||||| ||||||||| | |||||| |||||||||| ||||| ||||||||
Sbjct 494 TCAGTTGCTGACCTTCTTCAACCGGGTAATCCATTGGATGAAATTTCAATTGCTTGTATT 553
Query 548 ACACGCGATTTGCTTCATGCTGTTGAATATCTGCATAATGAGGGAAAGATCCACAGAGAC 607
|| ||||| | |||||||||||||||||||| || ||||||||| |||||||||||
Sbjct 554 ACGCGCGACCTACTTCATGCTGTTGAATATCTCCACGCTGAGGGAAAAATCCACAGAGAT 613
Query 608 ATTAAAGCTGCGAATATTTTGTTGAGCGAGAATGGCGATGTTAAGGTGGCGGACTTTGGT 667
|||||||| || |||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 614 ATTAAAGCCGCTAATATTTTGTTGAGTGAGAATGGTGATGTTAAGGTCGCGGACTTTGGT 673
Query 668 GTGTCTGCTCAGCTAACGCGGACAATATCAAGAAGGAAGACTTTTGTAGGAACCCCATTT 727
|| ||||| || |||| |||||||||||||| || ||||| ||||| ||||| ||||||
Sbjct 674 GTTTCTGCACAATTAACCCGGACAATATCAAGGAGAAAGACATTTGTGGGAACACCATTT 733
Query 728 TGGATGGCACCAGAAGTTATTCAGAACTCAGAAGGGTATAATGAGAAGGCAGATATTTGG 787
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 734 TGGATGGCACCAGAAGTGATTCAGAACTCAGAAGGGTATAATGAGAAGGCAGATATATGG 793
Query 788 TCGCTCGGAATAACAGTTATTGAGATGGCAAAAGGAGAACCTCCCCTAGCTGACCTTCAT 847
|| || ||||||||| | || |||||||| |||||||||||||| || ||||||||||||
Sbjct 794 TCTCTTGGAATAACAATGATCGAGATGGCCAAAGGAGAACCTCCACTTGCTGACCTTCAT 853
Query 848 CCCATGAGAGTGCTTTTTATCATTCCTCGAGAAA-CTCCACCACAGTTAGATGAGCATTT 906
|| ||||||||||||||||||||||| || |||| | || || |||||||||||||||||
Sbjct 854 CCTATGAGAGTGCTTTTTATCATTCCCCGGGAAAGC-CCTCCTCAGTTAGATGAGCATTT 912
Query 907 TTCCCGTCAAGTAAAGGAGTTTGTTTCATTATGCCTGAAGAAGGCCCCTGCCGAGAGACC 966
||| |||| | ||||| |||||||| || ||| |||| ||||| ||||| ||||||||
Sbjct 913 TTCACGTCCTTTGAAGGAATTTGTTTCGTTCTGCTTGAAAAAGGCTCCTGCTGAGAGACC 972
Query 967 AAGTGCCAAAGAACTTATTAAACACAGATTTATTAAGAATGCTAGGAAAAGTCCGAAACT 1026
|||||||||||||||| | ||||| |||||||| |||||||||||||||| ||||||||
Sbjct 973 AAGTGCCAAAGAACTTCTCAAACATAGATTTATAAAGAATGCTAGGAAAAACCCGAAACT 1032
Query 1027 TCTTGAGAGGATAAGAGAGCGGCCAAAGTACCAAGTAAAAGAAGATGAAGAGACTCCTAG 1086
|||||| || ||||||||||||||||| |||||||||||||| || ||||||| ||| |
Sbjct 1033 TCTTGAAAGAATAAGAGAGCGGCCAAAATACCAAGTAAAAGAGGACGAAGAGATTCCAAC 1092
Query 1087 GAATGGGGCCAAAG-CTCCAGTTGAATCATCTGGTACTGTTAG-GATAGCTAGAGATGAA 1144
|| || ||||| |||| || ||||||||||| |||||||| | | ||| |||||||
Sbjct 1093 AAACGGT-CCAAAATCTCCCGTGGAATCATCTGGGACTGTTAGAG-TGGCTGGAGATGAG 1150
Query 1145 AGAAGCCAAGGCGCGCCTGGATA-TAGTTTTCAGGGGAATACCGTCAAAAATGCTGGATG 1203
|| |||| || | ||||| | ||||||||||| || || |||| |||||| || ||
Sbjct 1151 AGGGGCCAGGGAACTTCTGGA-ACTAGTTTTCAGGTAAAAACTGTCAGAAATGCGGGGTG 1209
Query 1204 GGACTTTACCGTTGGGGGGTCACAGAGTATTGGAACAGTTCGTGCTTTAAAACCTCCTCA 1263
|||||||| | ||||||| |||||| || |||||| ||||| |||||||||||||| ||
Sbjct 1210 GGACTTTAGCTTTGGGGGTTCACAGGGTGCTGGAACTGTTCGAGCTTTAAAACCTCCACA 1269
Query 1264 AGCAAGGGAGAGGCGCCAAGAAGTTTCTCCTAATCGGATTTCGCAAAGAACAACAAGA-C 1322
||| ||||| ||||||||||||||| | |||||| || ||| |||| |||| || || |
Sbjct 1270 AGCCAGGGAAAGGCGCCAAGAAGTTAGTTCTAATCAGACTTCTCAAAAAACATCACGAGC 1329
Query 1323 CTAGTGGTAATCAATGGTCATCTGCGACTGGGAGTACAATTTCTGAAG-CTTCTGAAGGA 1381
| ||||||| ||||| |||||| | ||| || || | ||| || ||||||||
Sbjct 1330 C-AGTGGTAGTCAATTGTCATCCACTTTTGGT-GTCCA-T----GAAATCT-CTGAAGGA 1381
Query 1382 GGTTTTGTCAGAAGACACCCTTTTCAGAATGACCATGAAGATGGCTTCCACGAAGAGGAC 1441
|||||| | | |||| | ||| ||||||| || || |||| | ||||| ||
Sbjct 1382 GGTTTTATTAAAAGAGATTCTTATCAGAATAACAATCAAGA--------A-GAAGATGA- 1431
Query 1442 GATTCATCGCTCAGTGGATCGGGAACTGTTGTCATAAGAACCCCAAGAAGTTCTCAATCA 1501
|||| ||||| || |||||||||||||||||| | || ||||| ||||| ||
Sbjct 1432 --TTCA------AGTGGTTCTGGAACTGTTGTCATAAGATCTCCGAGAAGCTCTCAGCCA 1483
Query 1502 TCTTCAGTATTCCGTGAACCAAGCTCTGGGTCTAGCGGCAGGTATGCAG-CTTTTGATGA 1560
|||||| | || ||||| | |||||||||||||| | |||||| | | ||||||||||
Sbjct 1484 TCTTCAATGTTTCGTGATCAAAGCTCTGGGTCTAAC---AGGTATAC-GTCTTTTGATGA 1539
Query 1561 TGCTTC-AGCAAGTGGAACTGTTGTTGTCCGTGGACAGTACGATGACTCTGGATCACCTC 1619
|||||| | | |||||||| || ||||||||||| ||| | ||||| |||||||||||||
Sbjct 1540 TGCTTCTA-CGAGTGGAACAGTCGTTGTCCGTGGGCAGAATGATGATTCTGGATCACCTC 1598
Query 1620 GAACCCCGAA-ATCTAGACTAGGGATTCAAGAGAGAACTTCGAGTGCATCAGAAGATAGC 1678
|||| || || ||||||||||||| ||||||| |||| ||| ||||| ||||||||||||
Sbjct 1599 GAACACC-AAGATCTAGACTAGGGCTTCAAGAAAGAAGTTCCAGTGCCTCAGAAGATAGC 1657
Query 1679 AACGCAAATCTCGCGGAGGCAAAGGCAGCACTCGACGCAGGTTTCAGAAG-GGGTAAGGC 1737
| | ||||||| || |||||||| |||||| || |||||||||||||| ||| || ||
Sbjct 1658 ATCTCAAATCTTGCAGAGGCAAAATTAGCACTTGAAGCAGGTTTCAGAAGAGGG-AATGC 1716
Query 1738 TAGAGAAAGACTTGGAATGGGAAATAACAATAATGATGGGAAGGTTAACAGAAGAAGGGA 1797
||| |||| |||||| | || | | || |||||||||| |||||| ||
Sbjct 1717 TAGGGAAAAACTTGG--T---AA-T---------G--GG-AAGGTTAACAAAAGAAGAGA 1758
Query 1798 GCAAATGGCAGATGATTCTGA-CTA-TTCAAGAAATTCCGGCGATAAGTCT-AGTAAACA 1854
||| ||||| ||||||| | | || | |||||||| ||||| | ||| | ||||||
Sbjct 1759 ACAAGCAACAGATAATTCTGATC-ACTTGA-GAAATTCCCGCGATCATTCTGA-TAAACA 1815
Query 1855 AAAAGTAGTTCC-AAGGTCAGAACAAGTGAGTGATGAAGAAGATGACTCCATATGGGAAT 1913
|||| ||| | ||| ||| |||||||||||||||| ||||||||||||| || | ||
Sbjct 1816 AAAACCAGT-CATAAGATCACAACAAGTGAGTGATGATGAAGATGACTCCAAATTAGCAT 1874
Query 1914 CATTGCCTGCATCATTGTCAGTGTTGCTCAT-ACCGTCCCTAAAAGAAGCTCTTGG---T 1969
||||| |||||||||||||| | ||||| || ||| ||||||||||| ||| | || |
Sbjct 1875 CATTGTCTGCATCATTGTCACTATTGCT-ATTACCATCCCTAAAAGAGGCTGTCGGGGGT 1933
Query 1970 GACGATTCTAAAGAATCTACTGTG-CGTACAGTGTCGAGATCCCTT-GTGATGATGGAAC 2027
||||| || |||| |||| || | | || ||| ||||||||| || |||| |||||||
Sbjct 1934 GACGACTCAAAAGGATCTGTTG-GACATAGAGTTTCGAGATCC-TTAGTGAACATGGAAC 1991
Query 2028 GTGAAAAGCCTGGTTCTTGTGAAGCTTTTGTTGCCAAGCTGATTGAACTTTTGGGAAGTT 2087
| |||||||||||||||| |||||||||| ||||||| || || |||| |||||||||
Sbjct 1992 GCGAAAAGCCTGGTTCTTCTGAAGCTTTTATTGCCAAACTTATCGAACAGTTGGGAAGTA 2051
Query 2088 CAAAAGAAGCT-TCGGTGAAAGAATTGCACGATATGGCGGTCTGTGTTTTTGCCAAGACC 2146
|||| |||| | || |||||||| |||| || |||||| || |||| || || |||||
Sbjct 2052 CAAATGAAG-TGTCAGTGAAAGAGGTGCAAGACATGGCGATCCGTGTGTTCGCTAAGACA 2110
Query 2147 AC-ACCCGACAATGCAGAGAACAAAATGAAA-CAAGCTAACAAGGAGTTTAGTTCCAACA 2204
| | | | ||||||||||||||| |||| ||||||| ||| || |||||||||||
Sbjct 2111 ATGAACA-ATGATGCAGAGAACAAAA-GAAAGCAAGCTAGCAAAGAATTTAGTTCCAATG 2168
Query 2205 CAAA-TGTTAGCCCACTCGGCA-GATTCTTACTCTCAAGATGGCTAGGCCAATCATCACG 2262
|||| | |||| ||||| | || |||||||| |||||||||||||||| ||| |||| ||
Sbjct 2169 CAAACT-TTAGTCCACTTG-CAAGATTCTTATTCTCAAGATGGCTAGGTCAAACATCGCG 2226
Query 2263 TGATCTTTAATCCCCCACCCTGAGACAAC-CTACAGA-GATGGAATCAT-----TG--GT 2313
||||||| || || | ||||||| | | ||||| || ||| ||| || ||
Sbjct 2227 TGATCTT-AA-CCAA-AGT-TGAGACA-CGC-ACAGAAGACAGAA-CATAAGAATGTTGT 2279
Query 2314 TTGTGCT-TCTTT-ATTTTC-TTTGATGCATTGATTTTTGGTAATTTATGT 2361
||||| | ||||| | || ||||||||||||| |||||||| |||||||
Sbjct 2280 TTGTG-TGTCTTTTACATTGATTTGATGCATTGAATTTTGGTA-TTTATGT 2328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97053944260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5