BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15240.2 Length=1269 Score E Sequences producing significant alignments: (Bits) Value Ahg478955 jgi|Araly1|478955|fgenesh2_kg.3__1656__AT3G15240.2 1912 0.0 > Ahg478955 jgi|Araly1|478955|fgenesh2_kg.3__1656__AT3G15240.2 Length=1238 Score = 1912 bits (1035), Expect = 0.0 Identities = 1188/1256 (95%), Gaps = 33/1256 (3%) Strand=Plus/Plus Query 28 AAAACTAGAGGAGAAACCCATATAACACAC------ACCGACATATTCATATAGATGGTG 81 ||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||| Sbjct 1 AAAACTAGAAGAGAAACACATATAACACACATATATACCGACATATTTATATAGATGGTG 60 Query 82 GGCTCGGaacatcatcaccatcatcaacaacatcatcatcaaaaccatcaGCAGCAGCAA 141 ||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 61 GGCTCGGAACATCAT---CATCAT------CATCATCATCAAAACCATCAGCAGCAGCAA 111 Query 142 CAAAGGAGCAAAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGT 201 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct 112 CAAAGGAGCAAAGAAGCTTTAGGGATGGTGGCTCTCCACGAGGCCCTAAGAACCGTTTGT 171 Query 202 CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCGAGAGTTCGA 261 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 172 CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCGAGAGTTCGA 231 Query 262 GGCGGTGGCAACGGCTGCAAAGTTGGCGACGACAATGGAAGCTTGATGTTGATGTGGGAA 321 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 232 GGCGGTGGCAACGGCTGCAAAGTGGGCGACGACAATGGAAGCTTGATGTTGATGTGGGAA 291 Query 322 GATGGATACTGCAGAGGAAGAGGAGGAACAGAAGGTTGCTATGGAGACATGGAAGGAGAA 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 292 GATGGATACTGCAGAGGAAGAGGAGGAACAGAAGGTTGCTATGGAGACATGGAAGGAGAA 351 Query 382 GATCCTGTTCGTAAATCTTTCAGCAAGATGTCTATTCAGTTATATAATTATGGCGAAGGG 441 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 352 GATCCTGTTCGTAAATCTTTCAGCAAGATGTCAATTCAGTTATATAATTATGGCGAAGGG 411 Query 442 TTAATGGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAA 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 412 TTAATGGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAA 471 Query 502 TCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTATTCCTTCAGAGTGG 561 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 472 TCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTATTCCTTCGGAGTGG 531 Query 562 AATGATCAGTTCGAATCTGGGATTCGGACCATAGCTGTTATTCAAGCCGGACATGGCCTT 621 |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 532 AATGATCAATTCGAATCTGGGATTCAGACCATAGCTGTTATTCAAGCCGGACATGGCCTT 591 Query 622 TTACAACTTGGTTCTTGCAAGATTATACCTGAAGATCTGCACTTTGTTCTTCGGATGAGG 681 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 592 TTACAACTCGGTTCTTGCAAGATTATACCTGAAGATCTGCACTTTGTACTTCGGATGAGG 651 Query 682 CACACGTTTGAATCACTTGGCTACCAATCCGGATTTTACCTCTCTCAGCTCTTCTCCTCA 741 ||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| Sbjct 652 CACACGTTTGAATCACTCGGCTACCAATCCGGCTTTTACCTCTCTCAGCTATTCTCCTCA 711 Query 742 AACCGAACCACTTCGTCTTCAAACACACCGCTCATGGCCTCGAACCACCCTCTACTACCT 801 ||||||||||||||| ||||||||||| ||||||||| ||||||||| ||| |||| ||| Sbjct 712 AACCGAACCACTTCGACTTCAAACACATCGCTCATGGGCTCGAACCATCCTATACTTCCT 771 Query 802 ACACAGACTCAGCCATTGCAACCCACTCTTCCCCACTACAACTGGAGTGGTACGAGCCAA 861 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 772 CCACAGACTCAGCCATTGCAACCCACTCTTCCCCACTACAACTGGAGTGGTACGAGCCAA 831 Query 862 CGACCAATGATGCCTCAAACCTCTTTGCCTACCTACCAGCCTCACATGACTATGCCTTTC 921 |||||||||||| |||||||||||||||||||||||||||||||||| | | |||| Sbjct 832 CGACCAATGATGGTTCAAACCTCTTTGCCTACCTACCAGCCTCACATG-C----C-TTTC 885 Query 922 CCAGTAATGCCACACTCAAACAAAGAACAAGACCCTGACGTGAAATGGCCCACGGGCCTA 981 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 886 CCAGTAATGCCACACTCAAACAAAGAACAAGACCCTGACGTGAAATGGCCCACGGGGCTA 945 Query 982 TCTTTCTTCAATGCGTTGACTAACAATGTCAACGCTAAGCTTCTGTTTGATTCAGAGGGG 1041 || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 946 TCATTCTTCAATGCGTTGACTAACAATGTCAATGCTAAGCTTCTGTTTGATTCAGAGGGG 1005 Query 1042 TTAGGTGACAAAACAGACCACCA--G--A--A---CCAGAGCCAGGAACAGAGCAACTCT 1092 ||||||||||||||||||||||| | | | ||||||||||||||||||||||||| Sbjct 1006 TTAGGTGACAAAACAGACCACCAAAGCCACCAAAACCAGAGCCAGGAACAGAGCAACTCT 1065 Query 1093 GAGAGTCAAGCGAATCCGAGCGAGTTCTTGAGCCTTGATAGTCACCACCGAAACATGAGT 1152 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1066 GAGAGTCAAGCGAATCCGAGCGAGTTCTTGAGCCTTGATAGTCACCACCGAAACATGAGT 1125 Query 1153 TTCTTAGAGTGATATGACTTCATGTATTCCCCTCGTAAGAACTTAGTTTGGTCTTTTTTC 1212 ||||| ||||||||||||||| ||||| || |||||||||||||||||||||| |||||| Sbjct 1126 TTCTTGGAGTGATATGACTTCGTGTATGCCTCTCGTAAGAACTTAGTTTGGTCCTTTTTC 1185 Query 1213 TATGCCTCTTGTTTGTTGTTTGGATCATTTTATCATCACTTATGTTAAACCTAGTT 1268 |||||||||||||||||||||||||| |||||||| | || |||||||||||||| Sbjct 1186 TATGCCTCTTGTTTGTTGTTTGGATCGTTTTATCA-C--TTGTGTTAAACCTAGTT 1238 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47424908748 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5