BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15240.2
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478955 jgi|Araly1|478955|fgenesh2_kg.3__1656__AT3G15240.2 1912 0.0
> Ahg478955 jgi|Araly1|478955|fgenesh2_kg.3__1656__AT3G15240.2
Length=1238
Score = 1912 bits (1035), Expect = 0.0
Identities = 1188/1256 (95%), Gaps = 33/1256 (3%)
Strand=Plus/Plus
Query 28 AAAACTAGAGGAGAAACCCATATAACACAC------ACCGACATATTCATATAGATGGTG 81
||||||||| ||||||| |||||||||||| ||||||||||| ||||||||||||
Sbjct 1 AAAACTAGAAGAGAAACACATATAACACACATATATACCGACATATTTATATAGATGGTG 60
Query 82 GGCTCGGaacatcatcaccatcatcaacaacatcatcatcaaaaccatcaGCAGCAGCAA 141
||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 61 GGCTCGGAACATCAT---CATCAT------CATCATCATCAAAACCATCAGCAGCAGCAA 111
Query 142 CAAAGGAGCAAAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGT 201
||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 112 CAAAGGAGCAAAGAAGCTTTAGGGATGGTGGCTCTCCACGAGGCCCTAAGAACCGTTTGT 171
Query 202 CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCGAGAGTTCGA 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCGAGAGTTCGA 231
Query 262 GGCGGTGGCAACGGCTGCAAAGTTGGCGACGACAATGGAAGCTTGATGTTGATGTGGGAA 321
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 232 GGCGGTGGCAACGGCTGCAAAGTGGGCGACGACAATGGAAGCTTGATGTTGATGTGGGAA 291
Query 322 GATGGATACTGCAGAGGAAGAGGAGGAACAGAAGGTTGCTATGGAGACATGGAAGGAGAA 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 GATGGATACTGCAGAGGAAGAGGAGGAACAGAAGGTTGCTATGGAGACATGGAAGGAGAA 351
Query 382 GATCCTGTTCGTAAATCTTTCAGCAAGATGTCTATTCAGTTATATAATTATGGCGAAGGG 441
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 352 GATCCTGTTCGTAAATCTTTCAGCAAGATGTCAATTCAGTTATATAATTATGGCGAAGGG 411
Query 442 TTAATGGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAA 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTAATGGGGAAGGTTGCTTCTGACAAATGCCATAAATGGGTTTTCAAGGAACAAACTGAA 471
Query 502 TCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTATTCCTTCAGAGTGG 561
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 472 TCTGAATCTAATGCCTCTAGTTACTGGCAAAGCTCATTCGATGCTATTCCTTCGGAGTGG 531
Query 562 AATGATCAGTTCGAATCTGGGATTCGGACCATAGCTGTTATTCAAGCCGGACATGGCCTT 621
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 532 AATGATCAATTCGAATCTGGGATTCAGACCATAGCTGTTATTCAAGCCGGACATGGCCTT 591
Query 622 TTACAACTTGGTTCTTGCAAGATTATACCTGAAGATCTGCACTTTGTTCTTCGGATGAGG 681
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 592 TTACAACTCGGTTCTTGCAAGATTATACCTGAAGATCTGCACTTTGTACTTCGGATGAGG 651
Query 682 CACACGTTTGAATCACTTGGCTACCAATCCGGATTTTACCTCTCTCAGCTCTTCTCCTCA 741
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 652 CACACGTTTGAATCACTCGGCTACCAATCCGGCTTTTACCTCTCTCAGCTATTCTCCTCA 711
Query 742 AACCGAACCACTTCGTCTTCAAACACACCGCTCATGGCCTCGAACCACCCTCTACTACCT 801
||||||||||||||| ||||||||||| ||||||||| ||||||||| ||| |||| |||
Sbjct 712 AACCGAACCACTTCGACTTCAAACACATCGCTCATGGGCTCGAACCATCCTATACTTCCT 771
Query 802 ACACAGACTCAGCCATTGCAACCCACTCTTCCCCACTACAACTGGAGTGGTACGAGCCAA 861
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CCACAGACTCAGCCATTGCAACCCACTCTTCCCCACTACAACTGGAGTGGTACGAGCCAA 831
Query 862 CGACCAATGATGCCTCAAACCTCTTTGCCTACCTACCAGCCTCACATGACTATGCCTTTC 921
|||||||||||| |||||||||||||||||||||||||||||||||| | | ||||
Sbjct 832 CGACCAATGATGGTTCAAACCTCTTTGCCTACCTACCAGCCTCACATG-C----C-TTTC 885
Query 922 CCAGTAATGCCACACTCAAACAAAGAACAAGACCCTGACGTGAAATGGCCCACGGGCCTA 981
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 886 CCAGTAATGCCACACTCAAACAAAGAACAAGACCCTGACGTGAAATGGCCCACGGGGCTA 945
Query 982 TCTTTCTTCAATGCGTTGACTAACAATGTCAACGCTAAGCTTCTGTTTGATTCAGAGGGG 1041
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 946 TCATTCTTCAATGCGTTGACTAACAATGTCAATGCTAAGCTTCTGTTTGATTCAGAGGGG 1005
Query 1042 TTAGGTGACAAAACAGACCACCA--G--A--A---CCAGAGCCAGGAACAGAGCAACTCT 1092
||||||||||||||||||||||| | | | |||||||||||||||||||||||||
Sbjct 1006 TTAGGTGACAAAACAGACCACCAAAGCCACCAAAACCAGAGCCAGGAACAGAGCAACTCT 1065
Query 1093 GAGAGTCAAGCGAATCCGAGCGAGTTCTTGAGCCTTGATAGTCACCACCGAAACATGAGT 1152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1066 GAGAGTCAAGCGAATCCGAGCGAGTTCTTGAGCCTTGATAGTCACCACCGAAACATGAGT 1125
Query 1153 TTCTTAGAGTGATATGACTTCATGTATTCCCCTCGTAAGAACTTAGTTTGGTCTTTTTTC 1212
||||| ||||||||||||||| ||||| || |||||||||||||||||||||| ||||||
Sbjct 1126 TTCTTGGAGTGATATGACTTCGTGTATGCCTCTCGTAAGAACTTAGTTTGGTCCTTTTTC 1185
Query 1213 TATGCCTCTTGTTTGTTGTTTGGATCATTTTATCATCACTTATGTTAAACCTAGTT 1268
|||||||||||||||||||||||||| |||||||| | || ||||||||||||||
Sbjct 1186 TATGCCTCTTGTTTGTTGTTTGGATCGTTTTATCA-C--TTGTGTTAAACCTAGTT 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5