BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15250.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478956 jgi|Araly1|478956|fgenesh2_kg.3__1657__AT3G15250.1 1020 0.0
> Ahg478956 jgi|Araly1|478956|fgenesh2_kg.3__1657__AT3G15250.1
Length=812
Score = 1020 bits (552), Expect = 0.0
Identities = 689/754 (91%), Gaps = 14/754 (2%)
Strand=Plus/Plus
Query 11 AAATGGAGAATCATCGAGTAACAACAAACTCCGACGAGCCACCACCGGAGTTTGAGTTCG 70
|||||||||||||| ||| ||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1 AAATGGAGAATCATAGAGAAACCACAAACTCCGACGAGCCACCACCGGATTTTGAGTTCG 60
Query 71 GATCGTTGACTCCAACTTCTCCGTCGCAAGACTCTTTCTCAGAGAATTCTCCCGCCGATC 130
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 61 GATCGTTGACTCCAACTTCTCCGTCGCAAGACTCTTTCACTGAGAATTCTCCCGCCGATC 120
Query 131 ATCTCTTTTTCAACGGCCGTCTCTTGCCACACGCATTCCCGGCGGCGAGCAGTATTTATA 190
| ||||| |||||||||||||||||||||||| | ||||| ||| ||| |||||||||||
Sbjct 121 ACCTCTTCTTCAACGGCCGTCTCTTGCCACACTCTTTCCCAGCGCCGACCAGTATTTATA 180
Query 191 CAAAGCGGTCAATCTCGAGTACGACCAGCGAATACACCTCCCGGTGCAATAGTACGAACA 250
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 181 CAAAGCGGTCAATCTCGAGTACGACCAGCGAATACACCTCCCGGAGCAGTAGTACGAACA 240
Query 251 GCAGCAGTAGTTTTGGTAGTAACAACAGCTCAACTTCTCAATCTCCGAGAACGAGCTA-T 309
|| | ||||||||||| ||||| | ||||||||||||||||||||||||||||||| | |
Sbjct 241 GCCGAAGTAGTTTTGGGAGTAATAGCAGCTCAACTTCTCAATCTCCGAGAACGAGC-AGT 299
Query 310 T-CAACCAGTAACAAGAACAACAGCCCCATTAATCAAGAGCCACTGGATTTGAAGTTGAA 368
| ||| || |||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 300 TGCAA-CATTAACAAGAACAACAGCCCCAATAATCAAGAGCCACTGGA--T----TTGAA 352
Query 369 GCCTCCAATTAGCAGATGTGACAAAACCGTAAATACGATGAGCAGTAGCTCCTACTCGTC 428
|||||||||||||||||||| ||||||||||||||||| | || ||||| ||||||||
Sbjct 353 GCCTCCAATTAGCAGATGTGGCAAAACCGTAAATACGACCAACAACAGCTCGTACTCGTC 412
Query 429 GCCACAACACAAGAGAAGGAAGGCGATGGAGATGGCGACAACGTCTCTGTACAGGTCGTA 488
||| ||| ||||||| ||||| |||| |||||||| |||| ||||||| |||||||| ||
Sbjct 413 GCCGCAATACAAGAGGAGGAAAGCGACGGAGATGGTGACAGCGTCTCTATACAGGTCTTA 472
Query 489 TTCATCGCAGCGGTGGCAATATATAACTCCGGTACCGGTGAGAATGAGTGGAGGGATAAG 548
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 473 TTCATCGCAGCGGTGGCAATATGTAACTCCGGTACCGGTGAAAATGAGTGGAGGGATAAG 532
Query 549 GGTCGGTGGCCGgaagaagaaggcggtgagggtgaggaagaagacggaagagagaag-gg 607
|||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| ||
Sbjct 533 GGTCGGTGGCCGGAAGAAGAAGGCGGCGAGGGTGAGGAAGGAGACGGAGGAGAGAAGAGG 592
Query 608 tgagtagggtgatgaagTTGTGGAGAAAACTTTTGATGGCGGCTATTTTTGTTTGTAGAG 667
||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||
Sbjct 593 -GAGTAGGGTGATGAAGTTGTGGAGAAAACTTTTAATGGCGGCAATTTTTGCTTGTAGAG 651
Query 668 AGTGTCATGCATTGGAGGGAGCTTGAGTGAGACTTGTGATTTTGTGACGTGGTTATGATT 727
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 652 AGTGTCATGCATTGGAGGGAGCTTGAGTGAGACTTGTGAAATTGTGACGTGGTTATGAT- 710
Query 728 AAG-AAAGTATTGATTGTTCAATAGTGAAGACTT 760
||| |||||||||||| ||||||| || ||||||
Sbjct 711 AAGGAAAGTATTGATTATTCAATACTGTAGACTT 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5