BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15260.1
Length=1159
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478958 jgi|Araly1|478958|fgenesh2_kg.3__1659__AT3G15260.2 1626 0.0
> Ahg478958 jgi|Araly1|478958|fgenesh2_kg.3__1659__AT3G15260.2
Length=1254
Score = 1626 bits (880), Expect = 0.0
Identities = 978/1025 (95%), Gaps = 8/1025 (1%)
Strand=Plus/Plus
Query 11 AGAAAGCGGCGGTGGAAGCTGAGACATGCAACAATGGCGTTCGTGTCAttctcttcttct 70
|||||||||||||||||||| |||||||| | |||| |||||||||||||||||||||
Sbjct 1 AGAAAGCGGCGGTGGAAGCT--GACATGCATCGGTGGCTTTCGTGTCATTCTCTTCTTCT 58
Query 71 ccttctctctctcttACACTCGCGATTCAACATTAATTTCGTTCTTCTTCATACACATAT 130
||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||
Sbjct 59 CCTTCTCTCTCTCTTACGCTCGCGATTCAAGATTAATTTCGTTCTTCTTCACACACATAT 118
Query 131 A-TAGAT-A--GTGTCTTCATTTTCCAACCATGACCGGTAGAGAAATCCTCCACAAGATG 186
| ||||| | ||||||| || ||| | ||||||||||||||||||| ||||||||||||
Sbjct 119 ATTAGATAATCGTGTCTTTATCTTCGAGCCATGACCGGTAGAGAAATTCTCCACAAGATG 178
Query 187 AAGGAATCCGTCAAGGAGAAAGTTGGGCTTGGTGCATCTGCTTCATCTGCAGATTCAGGG 246
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 179 AAGGAATCCGTCAAGGAGAAAGTTGGGCTTGGTGCATCTGCTTCTTCTGCAGATTCATGG 238
Query 247 AAAGGTAAGAGCAAGATGTTGAAGCAGATCACACATGGTTTTCATTTGGTGAAAGGGAAA 306
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 AAAGGTAAGAGCAAGATGTCGAAGCAGATTACACATGGTTTTCATTTGGTGAAAGGGAAA 298
Query 307 GCTTTTCACGAGATGGAAGATTATGTGGTTGCCAAATTCAAGGAAGTTGATGATAATGAG 366
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 299 GCTTTTCACGAGATGGAGGATTATGTGGTTGCCAAATTCAAGGAAGTTGATGACAATGAG 358
Query 367 CTTGGTC-TGTTTGCTATCTTCGATGGCCATCTTAGCCACGAGATTCCGGACTACTTGTG 425
||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 CTTGG-CTTGTTTGCTATCTTCGATGGCCATCTTAGCCACGAGATTCCTGACTACTTGTG 417
Query 426 CTCCCATTTGTTTGAGAACATCTTGAAAGAGCCGAATTTCTGGCAAGAACCTGAGAAAGC 485
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 418 CTCCCATTTGTTTGAGAACATCTTGAATGAGCCGAATTTCTGGCAAGAGCCTGAGAAAGC 477
Query 486 GATAAAGAAAGCTTACTATATAACGGATACAACGATTCTAGACAAGGCAGATGATTTGGG 545
||||||||||||||| ||||||||||||||||||||||| |||||||| | |||||||||
Sbjct 478 GATAAAGAAAGCTTATTATATAACGGATACAACGATTCTGGACAAGGCTGCTGATTTGGG 537
Query 546 AAAAGGAGGTTCTACTGCTGTGACTGCGATATTGATCAATTGCCAGAAGCTGGTGGTTGC 605
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GAAAGGAGGTTCTACTGCTGTGACTGCGATATTGATCAATTGCCAGAAGCTGGTGGTTGC 597
Query 606 TAATGTTGGTGACTCTCGAGCTGTTATTTGCCAAAATGGTGTTGCGAAGCCACTCTCAGT 665
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TAATGTCGGAGACTCTCGAGCTGTTATTTGCCAAAATGGTGTTGCGAAGCCACTCTCAGT 657
Query 666 TGATCATGAGCCGAACATGGAGAAGGATGAAATCGAGAACAGAGGAGGATTCGTTTCTAA 725
|||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 658 TGATCATGAGCCGAGCATGGAGAAGGATGAAATTGAGAACAGAGGCGGATTCGTTTCTAA 717
Query 726 CTTTCCTGGGGATGTTCCTCGAGTTGATGGTCAACTGGCTGTGGCAAGGGCATTTGGTGA 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CTTTCCTGGGGATGTTCCTCGAGTTGATGGTCAACTGGCTGTGGCAAGGGCATTTGGTGA 777
Query 786 TAAGAGTTTAAAGATGCATTTGAGTTCAGAACCATATGTTACGGTGGAGATAATTGATGA 845
||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||
Sbjct 778 TAAGAGTTTAAAGATGCATCTGAGTTCAGAACCATATGTCACGGTGGAGACAATTGATGA 837
Query 846 TGATGCAGAATTTCTTATCCTAGCAAGTGATGGACTATGGAAGGTCATGTCAAACCAAGA 905
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 838 TGATGCAGAATTTCTTATCCTAGCAAGTGATGGGCTGTGGAAGGTCATGTCAAACCAAGA 897
Query 906 AGCCGTTGACTCAATCAAGGGAATAAAAGATGCGAAGGCTGCAGCAAAGCACCTTGCAGA 965
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 AGCCGTTGACTCGATCAAGGGAATAAAAGATGCGAAGGCTGCAGCAAAGCACCTTGCAGA 957
Query 966 GGAGGCTGTTGCAAGGAAAAGCTCAGACGATATCTCAGTCGTCGTCGTGAAATTTCAGTG 1025
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 958 GGAGGCTGTTGCAAGGAAAAGCTCGGACGATATCTCAGTCGTCGTCGTGAAATTTCAGCG 1017
Query 1026 ACATT 1030
|||||
Sbjct 1018 ACATT 1022
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43231387878
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5