BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15280.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478960 jgi|Araly1|478960|fgenesh2_kg.3__1661__AT3G15280.1 857 0.0
> Ahg478960 jgi|Araly1|478960|fgenesh2_kg.3__1661__AT3G15280.1
Length=637
Score = 857 bits (464), Expect = 0.0
Identities = 585/643 (91%), Gaps = 10/643 (2%)
Strand=Plus/Plus
Query 1 AATCAAGACAACGAAAATTAACAATGGCGACTAGGTTTTTGGTGAAGAGACTCACGGCGG 60
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 AATCAAGAAAACGAAAAGTAACAATGGCGACTAGGTTTTTGGTGAAGAGACTCACGGAGG 60
Query 61 TGAATGTTTCAAGAACTCCTGGGGGAGATTTCTCCGGTTATGCTCTCCGACAAGCTACAA 120
||||||||||||||||||| ||||||||||| |||||||||| | | |||||||||||||
Sbjct 61 TGAATGTTTCAAGAACTCCAGGGGGAGATTTATCCGGTTATGTTTTACGACAAGCTACAA 120
Query 121 TCGGAATCAACCACTTCTCAACCGGATTTAAGCAAACGGAGGGCTCTACTCATGACGATA 180
||| ||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||
Sbjct 121 CCGGTATCAACCGCTTCTCAACCGGATTTAAGCAAACGGAGGGCACTAGTCACGACGATA 180
Query 181 AGTCCACGACGAGTTACGTGGCAGACAAGGCAAAGGAAGGGGTGAAGAAAGCGACCGACG 240
||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 181 AGTCCACAACGAATTACGTGGCGGACAAGGCAAAGGAAGGGGTGAAGAAAGCGACAGACG 240
Query 241 CAGCCGTCAGCACGGGTGATAACATGAAGGATGCGATGGATGGTGCGTGGAAAGCGGCTA 300
||||||||| | | || |||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 241 CAGCCGTCAACGCAGGAGATAACGTGAAGGATGCGATGGACGGTGCATGGAAAGCGGCTA 300
Query 301 AGGAAACGGGTCAAAACATTAGCGATGCGGTTACGGGCGATGATGATGACGGCAGAATTC 360
|||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| ||||
Sbjct 301 AGGAAACGGGTCAAAACATTAGTGATGCGGTTGCGGGCGATGATGACGACGGCAGGATTC 360
Query 361 AAGAGGATAAGGTCGCAGTGGAATTGAAGGATGTGCAACAGCCTGTGGATACGACGGAGT 420
|||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 361 AAGAGGATAAGGTCGCTGTGGAGTTGAAGGATGTTCAACAGCCTGTGGATACGACGGAGT 420
Query 421 ATAGAGGTGTGGAGGATCTACATCAGCAAACCGGCGGAGAAGTTAAGTCACCCTAAGCTA 480
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 ATAGAGGCGTGGAGGATCTACATCAGCAAACCGGCGGCGAAGTTAAGTCACCCTAAGCTA 480
Query 481 ATGTGTTAGGGTGTCTATCCTTTCTTTCATTGTTGTTTCAGTGAGAG---G-TTGCTTGT 536
|||| ||| || ||| |||||| | ||||||||||||||||||||| | ||||||||
Sbjct 481 TTGTGATAGTGTTTCTTTCCTTT-TCTCATTGTTGTTTCAGTGAGAGCTAGGTTGCTTGT 539
Query 537 GCCTCGTGGTTCAAATTAAAGGTTTATGAATGGACCGTGGCTTAGATCGCATTACAATTT 596
||||||||||||| | |||||||||||||||||| ||||||||||| || ||||||
Sbjct 540 GCCTCGTGGTTCAGA-----GGTTTATGAATGGACCGTAGCTTAGATCGCTTTGCAATTT 594
Query 597 ACTCTTATTACTAGTTGAACTAAAGCAAAATAAACAACTACTC 639
| |||||||||||||||||||||||||||||||||| ||||
Sbjct 595 GTTTTTATTACTAGTTGAACTAAAGCAAAATAAACAACCACTC 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5