BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15280.1 Length=652 Score E Sequences producing significant alignments: (Bits) Value Ahg478960 jgi|Araly1|478960|fgenesh2_kg.3__1661__AT3G15280.1 857 0.0 > Ahg478960 jgi|Araly1|478960|fgenesh2_kg.3__1661__AT3G15280.1 Length=637 Score = 857 bits (464), Expect = 0.0 Identities = 585/643 (91%), Gaps = 10/643 (2%) Strand=Plus/Plus Query 1 AATCAAGACAACGAAAATTAACAATGGCGACTAGGTTTTTGGTGAAGAGACTCACGGCGG 60 |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || Sbjct 1 AATCAAGAAAACGAAAAGTAACAATGGCGACTAGGTTTTTGGTGAAGAGACTCACGGAGG 60 Query 61 TGAATGTTTCAAGAACTCCTGGGGGAGATTTCTCCGGTTATGCTCTCCGACAAGCTACAA 120 ||||||||||||||||||| ||||||||||| |||||||||| | | ||||||||||||| Sbjct 61 TGAATGTTTCAAGAACTCCAGGGGGAGATTTATCCGGTTATGTTTTACGACAAGCTACAA 120 Query 121 TCGGAATCAACCACTTCTCAACCGGATTTAAGCAAACGGAGGGCTCTACTCATGACGATA 180 ||| ||||||| ||||||||||||||||||||||||||||||| ||| ||| ||||||| Sbjct 121 CCGGTATCAACCGCTTCTCAACCGGATTTAAGCAAACGGAGGGCACTAGTCACGACGATA 180 Query 181 AGTCCACGACGAGTTACGTGGCAGACAAGGCAAAGGAAGGGGTGAAGAAAGCGACCGACG 240 ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 181 AGTCCACAACGAATTACGTGGCGGACAAGGCAAAGGAAGGGGTGAAGAAAGCGACAGACG 240 Query 241 CAGCCGTCAGCACGGGTGATAACATGAAGGATGCGATGGATGGTGCGTGGAAAGCGGCTA 300 ||||||||| | | || |||||| |||||||||||||||| ||||| ||||||||||||| Sbjct 241 CAGCCGTCAACGCAGGAGATAACGTGAAGGATGCGATGGACGGTGCATGGAAAGCGGCTA 300 Query 301 AGGAAACGGGTCAAAACATTAGCGATGCGGTTACGGGCGATGATGATGACGGCAGAATTC 360 |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| Sbjct 301 AGGAAACGGGTCAAAACATTAGTGATGCGGTTGCGGGCGATGATGACGACGGCAGGATTC 360 Query 361 AAGAGGATAAGGTCGCAGTGGAATTGAAGGATGTGCAACAGCCTGTGGATACGACGGAGT 420 |||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 361 AAGAGGATAAGGTCGCTGTGGAGTTGAAGGATGTTCAACAGCCTGTGGATACGACGGAGT 420 Query 421 ATAGAGGTGTGGAGGATCTACATCAGCAAACCGGCGGAGAAGTTAAGTCACCCTAAGCTA 480 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 421 ATAGAGGCGTGGAGGATCTACATCAGCAAACCGGCGGCGAAGTTAAGTCACCCTAAGCTA 480 Query 481 ATGTGTTAGGGTGTCTATCCTTTCTTTCATTGTTGTTTCAGTGAGAG---G-TTGCTTGT 536 |||| ||| || ||| |||||| | ||||||||||||||||||||| | |||||||| Sbjct 481 TTGTGATAGTGTTTCTTTCCTTT-TCTCATTGTTGTTTCAGTGAGAGCTAGGTTGCTTGT 539 Query 537 GCCTCGTGGTTCAAATTAAAGGTTTATGAATGGACCGTGGCTTAGATCGCATTACAATTT 596 ||||||||||||| | |||||||||||||||||| ||||||||||| || |||||| Sbjct 540 GCCTCGTGGTTCAGA-----GGTTTATGAATGGACCGTAGCTTAGATCGCTTTGCAATTT 594 Query 597 ACTCTTATTACTAGTTGAACTAAAGCAAAATAAACAACTACTC 639 | |||||||||||||||||||||||||||||||||| |||| Sbjct 595 GTTTTTATTACTAGTTGAACTAAAGCAAAATAAACAACCACTC 637 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23903068959 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5