BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15290.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929316 jgi|Araly1|929316|scaffold_301773.1 1461 0.0
Ahg951679 jgi|Araly1|951679|scaffold_105800001.1 861 0.0
> Ahg929316 jgi|Araly1|929316|scaffold_301773.1
Length=925
Score = 1461 bits (791), Expect = 0.0
Identities = 876/918 (95%), Gaps = 1/918 (0%)
Strand=Plus/Plus
Query 42 AGAAGCAGATAGAAAAATGGCGGAGATGAAGAGTGTCGGAGTAGTTGGTGCTGGACAAAT 101
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 5 AGAAGCAGATAGAAAAATGGCGGAGATGAAGTGTGTCGGAGTAGTTGGTGCTGGACAGAT 64
Query 102 GGGTTCAGGAATCGCGCAACTCGCCGCCACGAGTGGCCTCGACGTTTGGCTCATGGACGC 161
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 65 GGGTTCAGGAATCGCACAACTCGCCGCCACGAGTGGCCTCGATGTTTGGCTCATGGACGC 124
Query 162 TGATCGAGATGCCCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGATTCGT 221
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 125 TGATCGAGATGCGCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGTTTCGT 184
Query 222 CTCCAAAGGTCTAATCTCCAAGGAAGTTGGTGATGATGCTATGCATCGTCTACGATTAAC 281
||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct 185 CTCCAAAGGTCTAATCTCCAAGGAAATTGGTGATGATTCTATGCATCGTCTACGTTTAAC 244
Query 282 ATCGAATCTTGAAGATTTGTGTTCTGCTGATATCATCGTTGAAGCCATTGTGGAATCAGA 341
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 245 ATCGAATCTTGAAGATTTGTGTTCCGCTGATATCATTGTTGAAGCCATTGTGGAATCAGA 304
Query 342 AGACATTAAGAAGAAGCTGTTTAAGGATCTAGATGGTATAGCTAAGAGTTCTGCGATTTT 401
||||||||||||||| ||||| |||||| ||||||||||||| ||||||| |||||||||
Sbjct 305 AGACATTAAGAAGAAACTGTTCAAGGATTTAGATGGTATAGCCAAGAGTTGTGCGATTTT 364
Query 402 AGCTTCTAACACAAGTTCTATATCCATTACTCGTCTTGCATCTGCTACGAGAAGACCCAG 461
||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||
Sbjct 365 AGCTTCTAACACAAGTTCTATCTCCATTACTCGTCTTGCATCTGCAACGAAAAGACCAAG 424
Query 462 CCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGAAATCAT 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 425 CCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGAGATCAT 484
Query 522 TCGCGGTGCAGATACCTCAGAAGAGACGTTTCTTGCTACAAAAGTTCTGGCTGAAAGGTT 581
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 485 TCGTGGTGCAGATACCTCAGAAGAGACGTTTATTGCTACAAAAGCTCTGGCTGAAAGGTT 544
Query 582 TGGCAAGACAACAGTCTGCTCACAAGACTATGCGGGATTCGTAGTGAACCGAATCCTCAT 641
|||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 545 TGGCAAGACAACAGTCTGTTCACAAGACTATGCGGGCTTCGTTGTGAACCGGATCCTCAT 604
Query 642 GCCTATGATCAATGAAGCGTTCCACACACTTTACACAGGGGTAGCTACAAAGGAAGACAT 701
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 605 GCCTATGATCAATGAAGCCTTCCACACACTTTACACAGGGGTAGCTACAAAGGAAGACAT 664
Query 702 TGACAGCGGAATGAAACACGGCACAAACCACCCGATGGGTCCTTTGGAGTTGGCGGACTT 761
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 665 AGACAGCGGAATGAAACACGGCACAAACCACCCGATGGGTCCTCTGGAGTTGGCGGACTT 724
Query 762 AATCGGTCTAGACGTGTGCTTGTCCGTAATGAAAGTGTTGCACGAGGGACTTGGGGACTC 821
||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 725 AATTGGTCTAGACGTGTGCTTGTCCGTAATGAAAGTGCTGCATGAGGGACTTGGGGACTC 784
Query 822 AAAGTACGCACCTTGCCCTCTTCTTGTTCAATACGTTGATGCTGGGAGATTAGGAAGAAA 881
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 785 AAAGTACGCACCTTGCCCTCTTCTTGTTCGATACGTTGATGCTGGAAGATTAGGAAGAAA 844
Query 882 ACGAGGAGTAGGAGTTTATGATTACCGTGAAGCTACACAGAAGCTGTCTCCGCGGCTCTG 941
|||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||
Sbjct 845 ACGAGGAGTAGGAGTTTATGATTACCGTAAAGCTACACAGAAGCCATCTCCTCGGCTCTG 904
Query 942 AGAAAGCAAATACCAAAG 959
|||| || ||||||||||
Sbjct 905 AGAA-GCGAATACCAAAG 921
> Ahg951679 jgi|Araly1|951679|scaffold_105800001.1
Length=586
Score = 861 bits (466), Expect = 0.0
Identities = 521/548 (95%), Gaps = 2/548 (0%)
Strand=Plus/Plus
Query 37 TTCAAAGAAGCAGATAGAAAAATGGCGGAGATGAAGAGTGTCGGAGTAGTTGGTGCTGGA 96
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 TTCGAAGAAGCAGATAGAAAAATGGCGGAGATGAAGTGTGTCGGAGTAGTTGGTGCTGGA 60
Query 97 CAAATGGGTTCAGGAATCGCGCAACTCGCCGCCACGAGTGGCCTCGACGTTTGGCTCATG 156
|| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 61 CAGATGGGTTCAGGAATCGCACAACTCGCCGCCACGAGTGGCCTCGATGTTTGGCTCATG 120
Query 157 GACGCTGATCGAGATGCCCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGA 216
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GACGCTGATCGAGATGCGCTCTCTCGAGCCACCGCAGCTATCTCCTCCTCCGTCAAACGT 180
Query 217 TTCGTCTCCAAAGGTCTAATCTCCAAGGAAGTTGGTGATGATGCTATGCATCGTCTACGA 276
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TTCGTCTCCAAAGGTCTAATCTCCAAGGAAATTGGTGATGATGCTATGCATCGTCTACG- 239
Query 277 T-TAACATCGAATCTTGAAGATTTGTGTTCTGCTGATATCATCGTTGAAGCCATTGTGGA 335
| |||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 240 TGTAACATTGAATCTTGAAGATTTGTCTTCTGCTGATATCATTGTTGAAGCCATTGTGGA 299
Query 336 ATCAGAAGACATTAAGAAGAAGCTGTTTAAGGATCTAGATGGTATAGCTAAGAGTTCTGC 395
||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||| |||
Sbjct 300 ATCAGAAGACATTAAGAAGAAACTGTTCAAGGATTTAGATGGTATAGCCAAGAGTTGTGC 359
Query 396 GATTTTAGCTTCTAACACAAGTTCTATATCCATTACTCGTCTTGCATCTGCTACGAGAAG 455
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 360 GATTTTAGCTTCTAACACAAGTTCTATCTCCATTACTCGTCTTGCATCTGCAACGAAAAG 419
Query 456 ACCCAGCCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGA 515
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 ACCAAGCCAGGTCATTGGAATGCACTTTATGAACCCTCCTCCAATAATGAAACTGGTTGA 479
Query 516 AATCATTCGCGGTGCAGATACCTCAGAAGAGACGTTTCTTGCTACAAAAGTTCTGGCTGA 575
|||||||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||
Sbjct 480 GATCATTCGTGGTGCAGATACCTCAGAAGAGACGTTTATTGCTACGAAAGCTCTGGCTGA 539
Query 576 AAGGTTTG 583
||||||||
Sbjct 540 AAGGTTTG 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5