BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15300.1
Length=901
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478962 jgi|Araly1|478962|fgenesh2_kg.3__1663__AT3G15300.1 1279 0.0
> Ahg478962 jgi|Araly1|478962|fgenesh2_kg.3__1663__AT3G15300.1
Length=816
Score = 1279 bits (692), Expect = 0.0
Identities = 782/823 (95%), Gaps = 15/823 (2%)
Strand=Plus/Plus
Query 87 AAAACATCAATGGAGATTTCAACAAACCCACcatcatcttcttcatcatctgtttcatct 146
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAAAGATCAATGGAGATTTCAACAAACCCACCATCATCTTCTTCATCATCTGCTTCATCT 60
Query 147 tccattatcaatggatcttt--a-catcatcacatcatAACTAGATCTGATCATTATCCA 203
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 61 TCCATTATCAATGGATCTTTACATCATCATCACATCATAACTAGATCTGATCATTATCCA 120
Query 204 ACAACTTTTGTTCAAGCTGACTCTTCTTCTTTCAAACAAGTCGTTCAGATGCTCACCGGA 263
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAACTTTTGTTCAAGCAGACACTTCTTCTTTCAAACAAGTCGTTCAGATGCTCACCGGA 180
Query 264 AGCTCCTCCCCAAGATCTCCAGACTCTCCGCGTCCTCCGACGACTCCTTCCGGCAAGGGT 323
||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 181 AGCTCTTCCCCGAGATCTCCTGACTCGCCGCGTCCTCCGACGACTCCTTCCGGCAAGGGT 240
Query 324 AATTTTGTGATTCCACCGATCAAAACCGCACAACCGAAGAAACATTCTGGTAACAAACTT 383
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATTTCGTGATTCCACCGATCAAAACCGCACAACCGAAGAAACATTCTGGTAACAAACTT 300
Query 384 TACGAGAGAAGATCACACGGCGGATTTAACAACAACCTCAAGAACAGTCTCATGATTAAT 443
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TACGAGAGAAGATCACACGGCGGATTTAACAACAACCTCAAGAACAGTCTCATGATTAAC 360
Query 444 ACACTCATGATC---GGTGGTGGTGGCGCCGGAAGTCCAAGATTCTCGCCGAGAAATCAG 500
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACACTCATGATCGGTGGTGGTGGTGGCGCCGGAAGTCCAAGATTCTCGCCGAGAAATCAG 420
Query 501 GAGATTTTGTCGCCTAGCTGTCTTGATTTCCCCAAGCTTGCACTTAACAGTCCCGTGACG 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAGATTTTGTCGCCTAGCTGTCTTGATTTCCCCAAGCTTGCACTTAACAGTCCCGTGACG 480
Query 561 CCGTTAAAGCAGGGAACCAACGGAAACGAAGGCGATCCTTTCGACAAGATGTCGCCATTA 620
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 481 CCGTTAAAGCAGGGAAACAACGGAAACGACGGCGATCCTTTCGATAAGATGTCGCCATTA 540
Query 621 TCGGAGGAAGAGAGAGGTATCGCAGACAAGGGTTATTACCTGCACCGGTCTCCGATTTCA 680
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct 541 TCGGAGGAAGAGAGAGCTATCGCTGACAAGGGTTATTACCTGCACCAGTCTCCGATTTCA 600
Query 681 ACTCCGAGAGATTCTGAGCCGCAGCTTCTGCCTCTGTTCCCGGTGACTTCTCCGAGATTA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 ACTCCGAGAGATTCTGAGCCGCAGCTTCTGCCTCTGTTCCCGGTGACTTCTCCGAGAGTA 660
Query 741 TCGCCGGAGATGTAGACTGAGAGACCTGTTTATAAATTTTTACTGCGACTGGAACTTTCA 800
||||||||||||||| |||||| || ||||||||||||||||||||||||| || ||||
Sbjct 661 TCGCCGGAGATGTAGGCTGAGAAAC-TGTTTATAAATTTTTACTGCGACTGTAATTTTCG 719
Query 801 TTTCTTTTTTAA-CTTTGCTCTGCTTTTAATATATCGTTATCCC-TGTTTCGGCTTATTA 858
|||||||| ||| |||||||||||||||||||| | ||||||| || ||||||||||||
Sbjct 720 TTTCTTTTATAAACTTTGCTCTGCTTTTAATATCT--TTATCCCCTGCTTCGGCTTATTA 777
Query 859 TACTATTTACTTTAAAATAGTAAAATATGCTAATTAAGTTTTT 901
|||||||||| ||| |||||||||||| |||||||||||||
Sbjct 778 --CTATTTACTT-AAA-TAGTAAAATATGTTAATTAAGTTTTT 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33395675292
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5