BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15330.1 Length=849 Score E Sequences producing significant alignments: (Bits) Value Ahg904462 jgi|Araly1|904462|Al_scaffold_0003_1590 811 0.0 Ahg950054 jgi|Araly1|950054|scaffold_801941.1 150 1e-35 > Ahg904462 jgi|Araly1|904462|Al_scaffold_0003_1590 Length=813 Score = 811 bits (439), Expect = 0.0 Identities = 517/555 (93%), Gaps = 3/555 (1%) Strand=Plus/Plus Query 43 TCATCATCTTCTTCTAGTAGTAATTGTAGTCATTTGTTTGTTCGTCACGGAATCTGCTTC 102 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 13 TCATCATCTTCTTCTAGTAGTAATTGTAGTCATTTGTTCGTTCGTCACGGAATCTGCTTC 72 Query 103 GCCTGTAAAAAGAAGGTGAGTTGTGTCCATGGCCGAGAATTCGGTTATCTTTTCTCCGGT 162 ||||||||| |||||| || | ||| | || |||| ||||| |||||||||||||||| Sbjct 73 ACCTGTAAAACGAAGGTCAGCTACGTCGAAGGTCGAGCATTCGATTATCTTTTCTCCGGT 132 Query 163 TTACGTCTGAGTCACGAAGCTGTATCCTTTACAAAGCATCTCACAACCCTAGTCTCAGTC 222 ||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 133 TTACGCCTAAGCCACGAAGCTGTATCCTTTACAAAGCAACTCACAACCCTAGTCTCAGTC 192 Query 223 TACGGACGCAAGAAGCTTCAC---TTGGTACTTGACTTGGACCACACGCTAATCCACTCC 279 ||||||| ||||||||||||| || || |||||||||||||||||||||||||||||| Sbjct 193 TACGGACACAAGAAGCTTCACTTATTAGTCCTTGACTTGGACCACACGCTAATCCACTCC 252 Query 280 ATGAAGACTTCAAATCTTTCCAAAGCAGAGAAATATCTAATCAAAGAAGAGAAATCAGGT 339 |||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 253 ATGAAGACTTTAAATCTTTCCAACGCAGAGAAGTATCTAATCAAAGAAGAGAAATCAGGT 312 Query 340 TCAAGGAAAGATCTGCGTAAATATAACAATAGATTAGTTAAGTTTCGACCTTTTGTTGAA 399 ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 313 TCAAGGAAAGATCTGCGAAAATATAACGATAGATTAGTTAAGTTTCGACCTTTTGTTGAA 372 Query 400 GAGTTCCTTAAAGAAGCCAACAAGCTTTTCACCATGACTGCTTACACAAAAGGCGGTTCC 459 ||||||||||||||||||||||||||||| || |||||||||||||||| || ||||| Sbjct 373 GAGTTCCTTAAAGAAGCCAACAAGCTTTTTACAATGACTGCTTACACAAGGGGAGGTTCG 432 Query 460 ACTTACGGTCAAGCTGTTGTGAGGATGATTGATCCAAACAAAATCTATTTCGGGGATCGA 519 ||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 433 ACTTACGCTAAAGCTGTTGTGAGGATGCTTGATCCAAACAAAATCTATTTCGGGGATCGA 492 Query 520 ATAATAACTAGAAAAGAGAGTCCTGACTTGAAAACACTTGATCTTGTCTTAGCTGATGAG 579 |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 493 ATAATAACCAGAAAAGAGAGTCCTGACTTAAAAACACTTGATCTTGTCTTAGCTGATGAG 552 Query 580 CGTGGAATCGTGATT 594 ||||||||||||||| Sbjct 553 CGTGGAATCGTGATT 567 Score = 287 bits (155), Expect = 1e-76 Identities = 197/218 (90%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 632 GAAACTTGTTGGAGATCACAAGCTACTTTTATTTCAAAAACGATGGCAAAAACATGATGA 691 |||||||||||||||||||||||||||| ||||||||||||||| || |||||| |||| Sbjct 569 GAAACTTGTTGGAGATCACAAGCTACTTCTATTTCAAAAACGATCACAGAAACATCATGA 628 Query 692 GGTCAAGATTATCCTACGCCGAGAGGAAGAGTGATGAGAGCAGAACCAAAAGAGCATTGG 751 |||||||| |||| ||||| |||||||||| ||| ||||| ||||||||||||||||||| Sbjct 629 GGTCAAGACTATCGTACGCAGAGAGGAAGACTGACGAGAGTAGAACCAAAAGAGCATTGG 688 Query 752 TGAATCTTCTGAAATTCCTCAAAGAAGTTCATAACGGATTCTTTACCTGTGGACTTGAAG 811 |||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 689 TGAAACTTCTCAAATTCCTCAAGGAAGTTCATAATGGATTCTTTACCTGTGGACTTGAAG 748 Query 812 AAGAGTTAGATTTTAAGGACGTCAGGTATTTGATAAAG 849 || |||| ||| | |||||||| ||||| ||||||||| Sbjct 749 AACAGTTGGATATCAAGGACGTTAGGTACTTGATAAAG 786 > Ahg950054 jgi|Araly1|950054|scaffold_801941.1 Length=961 Score = 150 bits (81), Expect = 1e-35 Identities = 459/632 (73%), Gaps = 64/632 (10%) Strand=Plus/Plus Query 228 ACG-CAAGAAGCTTCACTTGGTACTTGACTTGGACCACACGCTAATCCACTCCATGAAGA 286 ||| |||||||||||||||||||||||||||||| |||||||| ||||| || | | | Sbjct 283 ACGACAAGAAGCTTCACTTGGTACTTGACTTGGATCACACGCTTCTCCACACCGTTATGG 342 Query 287 CTTCAAATCTTTCCAAAGCAGAGAAA--TATCTAATCAAAGAAGAGAAATCAGGTTCAAG 344 ||| |||||||| |||| | ||||| |||||||| | ||||| ||| |||||| Sbjct 343 TTTCGAATCTTTCTAAAG-A-AGAAACGTATCTAATT---G--GAGAAG-CAGATTCAAG 394 Query 345 GAAAGATCTGCGTAAATATAAC--A--ATA-----G--A-TTAGT--TAA-GTTTCGACC 389 | ||||||| | || | |||| | ||| | | || | ||| | || |||| Sbjct 395 GGAAGATCTATGGAAGTTTAACGGAGGATACTCAAGCGAGTTCTTGATAAAGCTTAGACC 454 Query 390 TTTTGTTGAAGAGTTCCTTAAAGAAGCCAACAAGCT-TTTCACCATG-ACTGCTTACACA 447 || |||| | ||||| ||||||||||||||| || | ||| ||||| | || |||||| Sbjct 455 TTATGTTCACGAGTTTCTTAAAGAAGCCAACGAGATGTTTT-CCATGTA-TGTTTACACG 512 Query 448 AAAGGCGGT--TCCACTTACGGTCA-AGC-TGTTGTGAGGATGATTGATCCAAACAAAAT 503 | || | | | | ||||| | | | ||||| || | |||||||| | ||||| Sbjct 513 ATGGGAGATCGTG-A-TTACGCAAATAACGTGTTGA-AGC-TAATTGATCCGGAGAAAAT 568 Query 504 CTA-TTTCGGGGATCGAATAATAACTAGAAAAGAGAGTCCTGACT-TGAAA-ACACTTGA 560 || ||| || ||||| | ||||| ||||| ||||||||| | | | ||| |||||||| Sbjct 569 ATACTTT-GGACATCGAGTGATAACCAGAAACGAGAGTCCTTA-TAT-AAAGACACTTGA 625 Query 561 TCTTGTCTTAGCTGATGAGCGTGGAATCGTGATTGTGGATAATACGCCA-AATGTTTGGC 619 |||||| || ||||||||| ||||| | |||||||||||| |||| || || ||||||| Sbjct 626 TCTTGTTTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGATACTCCTCAA-GTTTGGC 684 Query 620 CTCATCATAAGAGAAACTTGTTGGAGATCAC-AAGCTACTTTTATTTCAAAAACGATGGC 678 || || | ||||| ||| || | |||||||| || ||| |||||| | || | | | Sbjct 685 CTGATGACAAGAGGAACCTGCTAGAGATCACCAAA-TACAATTATTTTAGTGACAA-GAC 742 Query 679 AAAAA-C-ATGATGAGGT-CAAGATTATCCTACGCCGAG-AGGAAGAGTGATGAGAG-CA 733 || | | ||| ||| || | || ||| || || ||| || ||||| || ||| | | Sbjct 743 AAGACGCGATG-TGAAGTACTCGAA-ATCTTATGCAGAGGAG-AAGAGAGACGAGGGTC- 798 Query 734 GAACCAAAAGAGCATTGGTGAATCTTCTGAAA-TTCCTCAAAGAAGTTCAT-AACGGATT 791 ||| | | || | |||| |||| || ||||| || |||| ||| || || || ||||| Sbjct 799 GAAACGATGGATCGTTGGCGAATGTTTTGAAAGTTA-TCAAGGAAATTTATGAA-GGATT 856 Query 792 CTTTACCTGTGGACTTGAAGAA-GAGTTAGAT 822 ||||| | | ||| |||| ||| ||||||||| Sbjct 857 CTTTAGCGGCGGAGTTGA-GAAAGAGTTAGAT 887 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31413283608 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5