BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15330.1
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904462 jgi|Araly1|904462|Al_scaffold_0003_1590 811 0.0
Ahg950054 jgi|Araly1|950054|scaffold_801941.1 150 1e-35
> Ahg904462 jgi|Araly1|904462|Al_scaffold_0003_1590
Length=813
Score = 811 bits (439), Expect = 0.0
Identities = 517/555 (93%), Gaps = 3/555 (1%)
Strand=Plus/Plus
Query 43 TCATCATCTTCTTCTAGTAGTAATTGTAGTCATTTGTTTGTTCGTCACGGAATCTGCTTC 102
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 13 TCATCATCTTCTTCTAGTAGTAATTGTAGTCATTTGTTCGTTCGTCACGGAATCTGCTTC 72
Query 103 GCCTGTAAAAAGAAGGTGAGTTGTGTCCATGGCCGAGAATTCGGTTATCTTTTCTCCGGT 162
||||||||| |||||| || | ||| | || |||| ||||| ||||||||||||||||
Sbjct 73 ACCTGTAAAACGAAGGTCAGCTACGTCGAAGGTCGAGCATTCGATTATCTTTTCTCCGGT 132
Query 163 TTACGTCTGAGTCACGAAGCTGTATCCTTTACAAAGCATCTCACAACCCTAGTCTCAGTC 222
||||| || || |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 133 TTACGCCTAAGCCACGAAGCTGTATCCTTTACAAAGCAACTCACAACCCTAGTCTCAGTC 192
Query 223 TACGGACGCAAGAAGCTTCAC---TTGGTACTTGACTTGGACCACACGCTAATCCACTCC 279
||||||| ||||||||||||| || || ||||||||||||||||||||||||||||||
Sbjct 193 TACGGACACAAGAAGCTTCACTTATTAGTCCTTGACTTGGACCACACGCTAATCCACTCC 252
Query 280 ATGAAGACTTCAAATCTTTCCAAAGCAGAGAAATATCTAATCAAAGAAGAGAAATCAGGT 339
|||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 253 ATGAAGACTTTAAATCTTTCCAACGCAGAGAAGTATCTAATCAAAGAAGAGAAATCAGGT 312
Query 340 TCAAGGAAAGATCTGCGTAAATATAACAATAGATTAGTTAAGTTTCGACCTTTTGTTGAA 399
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 313 TCAAGGAAAGATCTGCGAAAATATAACGATAGATTAGTTAAGTTTCGACCTTTTGTTGAA 372
Query 400 GAGTTCCTTAAAGAAGCCAACAAGCTTTTCACCATGACTGCTTACACAAAAGGCGGTTCC 459
||||||||||||||||||||||||||||| || |||||||||||||||| || |||||
Sbjct 373 GAGTTCCTTAAAGAAGCCAACAAGCTTTTTACAATGACTGCTTACACAAGGGGAGGTTCG 432
Query 460 ACTTACGGTCAAGCTGTTGTGAGGATGATTGATCCAAACAAAATCTATTTCGGGGATCGA 519
||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 433 ACTTACGCTAAAGCTGTTGTGAGGATGCTTGATCCAAACAAAATCTATTTCGGGGATCGA 492
Query 520 ATAATAACTAGAAAAGAGAGTCCTGACTTGAAAACACTTGATCTTGTCTTAGCTGATGAG 579
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 493 ATAATAACCAGAAAAGAGAGTCCTGACTTAAAAACACTTGATCTTGTCTTAGCTGATGAG 552
Query 580 CGTGGAATCGTGATT 594
|||||||||||||||
Sbjct 553 CGTGGAATCGTGATT 567
Score = 287 bits (155), Expect = 1e-76
Identities = 197/218 (90%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 632 GAAACTTGTTGGAGATCACAAGCTACTTTTATTTCAAAAACGATGGCAAAAACATGATGA 691
|||||||||||||||||||||||||||| ||||||||||||||| || |||||| ||||
Sbjct 569 GAAACTTGTTGGAGATCACAAGCTACTTCTATTTCAAAAACGATCACAGAAACATCATGA 628
Query 692 GGTCAAGATTATCCTACGCCGAGAGGAAGAGTGATGAGAGCAGAACCAAAAGAGCATTGG 751
|||||||| |||| ||||| |||||||||| ||| ||||| |||||||||||||||||||
Sbjct 629 GGTCAAGACTATCGTACGCAGAGAGGAAGACTGACGAGAGTAGAACCAAAAGAGCATTGG 688
Query 752 TGAATCTTCTGAAATTCCTCAAAGAAGTTCATAACGGATTCTTTACCTGTGGACTTGAAG 811
|||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 689 TGAAACTTCTCAAATTCCTCAAGGAAGTTCATAATGGATTCTTTACCTGTGGACTTGAAG 748
Query 812 AAGAGTTAGATTTTAAGGACGTCAGGTATTTGATAAAG 849
|| |||| ||| | |||||||| ||||| |||||||||
Sbjct 749 AACAGTTGGATATCAAGGACGTTAGGTACTTGATAAAG 786
> Ahg950054 jgi|Araly1|950054|scaffold_801941.1
Length=961
Score = 150 bits (81), Expect = 1e-35
Identities = 459/632 (73%), Gaps = 64/632 (10%)
Strand=Plus/Plus
Query 228 ACG-CAAGAAGCTTCACTTGGTACTTGACTTGGACCACACGCTAATCCACTCCATGAAGA 286
||| |||||||||||||||||||||||||||||| |||||||| ||||| || | | |
Sbjct 283 ACGACAAGAAGCTTCACTTGGTACTTGACTTGGATCACACGCTTCTCCACACCGTTATGG 342
Query 287 CTTCAAATCTTTCCAAAGCAGAGAAA--TATCTAATCAAAGAAGAGAAATCAGGTTCAAG 344
||| |||||||| |||| | ||||| |||||||| | ||||| ||| ||||||
Sbjct 343 TTTCGAATCTTTCTAAAG-A-AGAAACGTATCTAATT---G--GAGAAG-CAGATTCAAG 394
Query 345 GAAAGATCTGCGTAAATATAAC--A--ATA-----G--A-TTAGT--TAA-GTTTCGACC 389
| ||||||| | || | |||| | ||| | | || | ||| | || ||||
Sbjct 395 GGAAGATCTATGGAAGTTTAACGGAGGATACTCAAGCGAGTTCTTGATAAAGCTTAGACC 454
Query 390 TTTTGTTGAAGAGTTCCTTAAAGAAGCCAACAAGCT-TTTCACCATG-ACTGCTTACACA 447
|| |||| | ||||| ||||||||||||||| || | ||| ||||| | || ||||||
Sbjct 455 TTATGTTCACGAGTTTCTTAAAGAAGCCAACGAGATGTTTT-CCATGTA-TGTTTACACG 512
Query 448 AAAGGCGGT--TCCACTTACGGTCA-AGC-TGTTGTGAGGATGATTGATCCAAACAAAAT 503
| || | | | | ||||| | | | ||||| || | |||||||| | |||||
Sbjct 513 ATGGGAGATCGTG-A-TTACGCAAATAACGTGTTGA-AGC-TAATTGATCCGGAGAAAAT 568
Query 504 CTA-TTTCGGGGATCGAATAATAACTAGAAAAGAGAGTCCTGACT-TGAAA-ACACTTGA 560
|| ||| || ||||| | ||||| ||||| ||||||||| | | | ||| ||||||||
Sbjct 569 ATACTTT-GGACATCGAGTGATAACCAGAAACGAGAGTCCTTA-TAT-AAAGACACTTGA 625
Query 561 TCTTGTCTTAGCTGATGAGCGTGGAATCGTGATTGTGGATAATACGCCA-AATGTTTGGC 619
|||||| || ||||||||| ||||| | |||||||||||| |||| || || |||||||
Sbjct 626 TCTTGTTTTGGCTGATGAGTGTGGAGTTGTGATTGTGGATGATACTCCTCAA-GTTTGGC 684
Query 620 CTCATCATAAGAGAAACTTGTTGGAGATCAC-AAGCTACTTTTATTTCAAAAACGATGGC 678
|| || | ||||| ||| || | |||||||| || ||| |||||| | || | | |
Sbjct 685 CTGATGACAAGAGGAACCTGCTAGAGATCACCAAA-TACAATTATTTTAGTGACAA-GAC 742
Query 679 AAAAA-C-ATGATGAGGT-CAAGATTATCCTACGCCGAG-AGGAAGAGTGATGAGAG-CA 733
|| | | ||| ||| || | || ||| || || ||| || ||||| || ||| | |
Sbjct 743 AAGACGCGATG-TGAAGTACTCGAA-ATCTTATGCAGAGGAG-AAGAGAGACGAGGGTC- 798
Query 734 GAACCAAAAGAGCATTGGTGAATCTTCTGAAA-TTCCTCAAAGAAGTTCAT-AACGGATT 791
||| | | || | |||| |||| || ||||| || |||| ||| || || || |||||
Sbjct 799 GAAACGATGGATCGTTGGCGAATGTTTTGAAAGTTA-TCAAGGAAATTTATGAA-GGATT 856
Query 792 CTTTACCTGTGGACTTGAAGAA-GAGTTAGAT 822
||||| | | ||| |||| ||| |||||||||
Sbjct 857 CTTTAGCGGCGGAGTTGA-GAAAGAGTTAGAT 887
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31413283608
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5