BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15340.1
Length=2293
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478964 jgi|Araly1|478964|fgenesh2_kg.3__1665__AT3G15340.1 2996 0.0
Ahg493672 jgi|Araly1|493672|fgenesh2_kg.7__3105__AT3G15340.1 1711 0.0
Ahg314636 jgi|Araly1|314636|fgenesh1_pm.C_scaffold_1003416 185 1e-45
Ahg328945 jgi|Araly1|328945|fgenesh1_pm.C_scaffold_7001172 115 1e-24
> Ahg478964 jgi|Araly1|478964|fgenesh2_kg.3__1665__AT3G15340.1
Length=2226
Score = 2996 bits (1622), Expect = 0.0
Identities = 2052/2252 (91%), Gaps = 59/2252 (3%)
Strand=Plus/Plus
Query 67 tttttttctctctttagatttcatttctttttttttttCCAGTAATCAAATTAAACTTTG 126
||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 1 TTTTTTTCTCTCTTTAGATTTCA-------TTTTTTTCCCAGTAATCAAATTAAAATTTG 53
Query 127 CCTC-TTCAGCCCAAAAACCCTGAGATTTTTGGGAGAATCTGTGTGACACTCATTTC-TT 184
|||| ||||| || ||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 54 CCTCTTTCAGTCC-AAAACCCTGAGATTTTTGGGAGAATCTCTGTGACACTCATTTCTTT 112
Query 185 CTTTCTAGGAAAGAATCAAAAATGGGTGCGCAAATTATACTCTCTGAAGGCTTCGAGGTG 244
||||||||||||||||| ||||||||| || | |||||||||| ||| ||||||||||||
Sbjct 113 CTTTCTAGGAAAGAATCCAAAATGGGTTCGGAGATTATACTCTGTGATGGCTTCGAGGTG 172
Query 245 GTTCCTCCGCCGGAGATGAACGATTTGGTACTCTTCGGAAGCA-ACCAATCTGTATCAAG 303
||||||||||| ||| ||||||||| ||||||||||||| | |||||||||||||||
Sbjct 173 GTTCCTCCGCC---GATAAACGATTTGATACTCTTCGGAAG-AGGCCAATCTGTATCAAG 228
Query 304 TTGCGATGTATCAACGGTCACCACC---GAAGATGGCACTGTTTTTTCCGGTGATAGTTC 360
|||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||||
Sbjct 229 TTGCGATGTATCAACGATCACTACCGAAGAAGACGGCACTGTTTTTTCCGGTGATAGTTC 288
Query 361 ACCGGGAGGTGCAACTGAAGAGGATTTCCCTGAAGAGAAACCTTTCTC-TTTCTACTTTG 419
|||||||||||| |||||||||||| |||||||| ||| |||| || ||| |||||||
Sbjct 289 GCCGGGAGGTGCAGCTGAAGAGGATTGGCCTGAAGATAAATCTTTATCGTTT-TACTTTG 347
Query 420 TTAAGCAACCAGCTTACGATGATCCCGAGATCAAAGCTAAGATCGATGAAGCTGGTCATG 479
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 348 TTAAGCAACCAGCTTACGATGATCCCGAGATCCAAGCCAAGATCGATGAAGCTGGTCATG 407
Query 480 AGATTAATCGA-TATAATAAAGACCGAATTGTTGTCTCCAATGCTCAGGAATCCGAAAAG 538
||||||| | | | |||| || ||| |||| |||||||| ||||||| |||||||||||
Sbjct 408 AGATTAAGC-ACTGTAATCAACTCCGTATTGGTGTCTCCAGTGCTCAGAAATCCGAAAAG 466
Query 539 GCTGAGATTTTGTCTCTGTTTGGTCA-A-ATGAAGAGTTTGGTTTCTAAATCGGAAGGAT 596
|||||||||| |||| ||||| ||| | ||| ||||||| | ||||||| |||||||
Sbjct 467 GCTGAGATTTCGTCTTTGTTT--TCACATATGGTGAGTTTGACTCCTAAATCAGAAGGAT 524
Query 597 ATAGAGTGGTTATTGAAGAGAAGAAGATGGAATTTGATGCTCTACATGAATCTCTACGGA 656
||||||||||| ||||||||||||||| |||||||||| ||||||| ||| |||||||||
Sbjct 525 ATAGAGTGGTTTTTGAAGAGAAGAAGAGGGAATTTGATACTCTACAAGAAGCTCTACGGA 584
Query 657 ATCTCCGGTGCTCTACTAGTGATCAACTTTGTTTTTCGAAGGAGGAGCTCGATCATCTTA 716
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 585 ATCTCCGGTGCTCTACTAGTGATCAACTTTGTTTTTCAAAGGAGGAACTCGATCATCTTA 644
Query 717 TTTATATAGCTCATTATCAGATTGAACATGGTAGCATTGGTTTTGAGGAAGAAGATTGGG 776
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 645 TGTATATAGCTCATTATCAGATTGAACATGGTAGCATTGGTTTGGAGGAAGAAGATTGGG 704
Query 777 TGCTTAAGGAGACTGAGAAGGCTGATGGGATAGTTCTAAGTGAGGATTCTCTTGCGGAGA 836
||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 705 TGCTTAAAGAGACCGAGAAGCCTGATGGGATAGTTCTAAGTGAGGATTCTCTTGCGGAGA 764
Query 837 AAGAAGCCTCCATAAACCGTGTCAAGTCTATGGCTGTGGAATTGAATGAAGTAAAGAAGG 896
||||||| |||||||||||||| ||||||| ||| ||||||||| || ||||||||||||
Sbjct 765 AAGAAGCTTCCATAAACCGTGTTAAGTCTAAGGCCGTGGAATTGTATCAAGTAAAGAAGG 824
Query 897 AGCTTGATGCGATTACATGGAAGATAAACCAT-TTGAG-TGACAAAGTGGGGAAGAGTCA 954
|||| ||||||||||||||||||||||||| | ||| | ||| ||| ||||||||||||
Sbjct 825 AGCTCGATGCGATTACATGGAAGATAAACC-TCTTG-GCTGAAAAAATGGGGAAGAGTCG 882
Query 955 GAACAACCTCAGGGTTTTGGATGTAAAAAAGGCACACATACTTGAGGAA-AGGGACAGAT 1013
|||||| ||| | ||||||||||| || |||||||||||||||| || ||||||||||
Sbjct 883 GAACAAGATCAAGATTTTGGATGTAGAACTGGCACACATACTTGAG-AAGAGGGACAGAT 941
Query 1014 CCTATGAAAGGATTAAGATGTTGAGAATACAACGAGACAAAGGGAAAGCTGCCTTTTACC 1073
||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |
Sbjct 942 CCTATGAAAGGATTAGGATGTTGAGGATACAACGAGACAAAGGGAAAGATGCCTTTTTCG 1001
Query 1074 AGAGCCTTCCTGTTATGAGGAAAGCTAGAGAATTGGCTGCTTCTGGAAATGTTAGAGATC 1133
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1002 AGAGCCTTCCTGTTATGAGGAAAGCTAAAGAATTGGCTGCTTCTGGAAATGTTCGAGATC 1061
Query 1134 TTGAAGTGTTTGCCAGCTCCGAGGCTGATAGATTCATGACTCAATGGAATGATGACAAGG 1193
||||||||||||||| ||| |||| ||| |||||||||||||| ||||||||||||||||
Sbjct 1062 TTGAAGTGTTTGCCAACTCTGAGGTTGAAAGATTCATGACTCATTGGAATGATGACAAGG 1121
Query 1194 CTTTTAGGGATGATTACGTAAAAAGAATATCTCCTTCACTATGTGAAAGACAGCTGAACC 1253
|||||||||||||||||||||||||||| || | |||||| |||||||||||||||||||
Sbjct 1122 CTTTTAGGGATGATTACGTAAAAAGAATCTCGCTTTCACTTTGTGAAAGACAGCTGAACC 1181
Query 1254 AAGATGGTCGGATTAAAGATCCTGAAGTTCAGGTTGTTTGGGAAAAGAAAGTGCCGGTTA 1313
||||||| |||||||||||||||||||||||||||||| |||||||| |||| |||||||
Sbjct 1182 AAGATGGCCGGATTAAAGATCCTGAAGTTCAGGTTGTTGGGGAAAAGCAAGTACCGGTTA 1241
Query 1314 AG-----G--G--AGGCGAGAAGGTTCACGAGACGAATAGAGAAGATTCCAGCTCCAACT 1364
|| | | |||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1242 AGACTATGAAGGGAGGCGAGAAGGTTCACAAGACGAATAGAGAAGATCCCAGCTCCAACT 1301
Query 1365 CGTCTCAATATGGAAGTGTAATTACAGATAAACGaaaaaaaGAAACGAGGAAAAAGGCGA 1424
|| |||| ||||||||||||||| |||||||| || | |||| ||||||||||||||||
Sbjct 1302 TGTTTCAAGATGGAAGTGTAATTATAGATAAACCAACACAAGAGACGAGGAAAAAGGCGA 1361
Query 1425 TGGATTTCAACAGGTCGAGTGCTGAGGAGAGTGATGTTACAGATTTGGAATTCTCGGTGT 1484
|||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1362 TGGATTTCAACAGGTCAAGTGCTGAGGAGAGTGATGTTATAGATTTGGAATTCCCGGTGT 1421
Query 1485 ATgagaaaccaaagaaggaagaagaagaggtcgatgaagaaactttgaaggagagggaaa 1544
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1422 ATGAGAAACCAAAGAAGGAAGAAGAAGAGGTCGATGAAGAAACTTTGAAGGAGAGGAAAA 1481
Query 1545 gagaagagcagttagagaaagCCCGGTTAGCAATGGAAAGGAAGAGGAAGCTTCAAGAGA 1604
|||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1482 GAGAAGAGCAGTTAGAGAAAGCTCGGTTAGCGATGGAAAGGAAGAGGAAGCTGCAAGAGA 1541
Query 1605 AAGCTGCTGCTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAGGAGT 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 AAGCTGCTGCTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAGGAGT 1601
Query 1665 GTGAGAAGAAGGCCAAGAAGAAAGCTGCTGCAAATTCTTCCTCTCCTTCAGAATCAGACC 1724
||||||| ||||| |||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1602 GTGAGAAAAAGGCGAAGAAGAAAGCTGC---AAATTCTTCTTCTCCTTCAGAATCAGACC 1658
Query 1725 ACTCACAAGAAGTAACCAAAGACCTGGAAAAGGTTAGGACTCTAGCAGTTTCAG-GTAAA 1783
| ||||||||||| | ||| || |||||||||| ||||||| |||| ||||||| | |||
Sbjct 1659 AATCACAAGAAGTTATCAATGAGCTGGAAAAGGGTAGGACTTTAGCTGTTTCAGTG-AAA 1717
Query 1784 GAAAAACACCAAAAGGAGAGATCATTGTTTCCAAAGCAGAGAAGTTTCAGGTACAAACAC 1843
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1718 GAGAAACCCCAAAAGGAGAGATCATTGTTTCCAAAGCAGAGAAGTTTCAGGTACAAACAC 1777
Query 1844 CGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAAGGCTCATAAA 1903
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||
Sbjct 1778 CGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCAATCCTAAACCGTAGAAGGGCTCAAAAA 1837
Query 1904 TATTGGGTTTGGGGACTTTCATCTGCTGCACTTGCTGTCGCACTCTTCCTTGTGGTTTTA 1963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1838 TATTGGGTTTGGGGACTTTCATCTGCTGCACTTGCTGTCGCACTCTTCCTTGTGGTTTTA 1897
Query 1964 CTTCTACGGTAAATTGAGAAAGGAAAGAGACATTAAAGAGGTTT-GAGTTTGCCTAATGG 2022
||||||||||||| || |||||||||||||||||||| |||||| || | |||||||| |
Sbjct 1898 CTTCTACGGTAAACTGGGAAAGGAAAGAGACATTAAAAAGGTTTTGACTCTGCCTAATTG 1957
Query 2023 AGAGATAGAGTGAGTGAAGGAAGAGCTGCTTCTAGACTTTCAAAGTTAGCTTTTAGTTTC 2082
||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1958 -GAGATGGAGCAAGTGAAGGAAGAGCTGCTTCTGGACTTTCAAAGTTAGCTTTTAGTTTC 2016
Query 2083 ATAACCTTAGATGTTGGTTAATATGTTTCTGTCTCTTCGGAGAGTTGTGTGATAAAAAAG 2142
||||||||||||||| |||||||||| |||||||||| |||||||||| | | |||||||
Sbjct 2017 ATAACCTTAGATGTTAGTTAATATGTATCTGTCTCTTTGGAGAGTTGTCTTAAAAAAAAG 2076
Query 2143 AGAAACATCCTAAT----AG--G-AGCTTCTGTAAGTCCATAGAGACTCCATGTTGTCTT 2195
|||||||||||||| || | |||||||| |||||||||||||||||||||||||||
Sbjct 2077 AGAAACATCCTAATTGTTAGTAGGAGCTTCTGAAAGTCCATAGAGACTCCATGTTGTCTT 2136
Query 2196 TATGTGAACATTGTGGATTGAATCCACTTTATA-TCTAGTCAAGTATCTTGACTA-CATA 2253
||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | ||
Sbjct 2137 TATGTGAACATTGTGGATTGAATCCACTTTATAGT-TAGTCAAGTATCTTGACTAAC-TA 2194
Query 2254 TATACTTAGAAATTGCAAATAACATAAAGCTT 2285
||||||||||||||||||||||||||||||||
Sbjct 2195 TATACTTAGAAATTGCAAATAACATAAAGCTT 2226
> Ahg493672 jgi|Araly1|493672|fgenesh2_kg.7__3105__AT3G15340.1
Length=1869
Score = 1711 bits (926), Expect = 0.0
Identities = 1309/1488 (88%), Gaps = 49/1488 (3%)
Strand=Plus/Plus
Query 206 ATGGGTGCGCAAATTATACTCTCTGAAGGCTTCGAGGTGGTTCCT----CC--GCCG--- 256
|||| || ||| |||||||||| ||| |||||||||||||||||| || ||||
Sbjct 1 ATGGATGGGCAGATTATACTCTGTGATGGCTTCGAGGTGGTTCCTCCGCCCGAGCCGCCC 60
Query 257 GAGATGAACGATTTGGTACTCTTCGGAAGCAACCAATCTGTATCAAG-TTGCGATGTATC 315
| ||||||||| | | |||| || |||| |||||||||| || || | |||| | |||
Sbjct 61 GTGATGAACGAGCTAATTCTCTCCGAAAGCGACCAATCTGTGTC-AGATGGCGA-G-ATC 117
Query 316 AACGGTCACC-ACCGAAGATGGCACTGTTTTTTCCGGTGATAGTTCACCGGGAGGTGCAA 374
|| |||| | |||||| | ||||||||||||||||||||||||||||| || || |
Sbjct 118 -AC---CACCGA-CGAAGAAGACACTGTTTTTTCCGGTGATAGTTCACCGGAAGTTGGAG 172
Query 375 C---TGAAGAGGATTTCCCTGAAGAGAAACCTTTCTCTTTCTACTTTGTTAAGCAACCAG 431
| ||||||||||| | || ||| ||||||||||||||||||||||||||||||||||
Sbjct 173 CTGATGAAGAGGATTGGCATGGAGATAAACCTTTCTCTTTCTACTTTGTTAAGCAACCAG 232
Query 432 CTTACGATGATCCCGAGATCAAAGCTAAGATCGATGAAGCTGGTCATGAGATTAATCGA- 490
|| ||||||||||||||||||||| ||||||||||||||| | | |||||| || |
Sbjct 233 TTTTCGATGATCCCGAGATCAAAGCCAAGATCGATGAAGCTAATGAGGAGATTTTTC-AT 291
Query 491 TATAATAAAGACCGAATTGTTGTC-TCCAATGCTCAGGAATCCGAAAAGGCTGAGATTTT 549
| |||||| |||||| | |||| | ||||||| || |||||||||||| ||||||||
Sbjct 292 TGTAATAATCTCCGAATCGATGTCGT-CAATGCTAAGAAATCCGAAAAGGTTGAGATTTC 350
Query 550 GTCTCTGTTTGGTCAAATGAAGAGTTTGGTTTCTAAATCGGAAGGATATAGAGTGGTTAT 609
|||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||| |
Sbjct 351 GTCTTTGTTTGCTCAAATGAAGAGTTTGGTTCCTAAATCGGAACAATATAGAGTGGTTTT 410
Query 610 TGAAGAGAAGAAGATGGAATTTGATGCTCTACATGAATCTCTACGGAATCTCCGGTGCTC 669
|||||||||||||| |||||||||| |||||| |||| ||||||||||||| ||||||||
Sbjct 411 TGAAGAGAAGAAGAGGGAATTTGATACTCTACTTGAAGCTCTACGGAATCTTCGGTGCTC 470
Query 670 TACTAGTGATCAACTTTGTTTTTCGAAGGAGGAGCTCGATCATCTTATTTATATAGCTCA 729
|||||||||||||||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 471 TACTAGTGATCAACTTTGTTTTTCAAAGGAGGAACTAGATCATCTTATTTATATAGCTCA 530
Query 730 TTATCAGATTGAACATGGTAGCATTGGTTTTGAGGAAGAAGATTGGGTGCTTAAGGAGAC 789
||||||||||||| |||||||||||||||| |||||||| ||||||| |||||| |||||
Sbjct 531 TTATCAGATTGAATATGGTAGCATTGGTTTGGAGGAAGACGATTGGGAGCTTAAAGAGAC 590
Query 790 TGAGAAGGCT-GATGGGAT-AGTTCTAAGTGAGGATTCTCTTGCGGAGAAAGAAGCCTCC 847
|||||| || |||||||| | |||||||||||||||||||||||||||||||||| ||
Sbjct 591 CGAGAAG-CTTGATGGGATCA-TTCTAAGTGAGGATTCTCTTGCGGAGAAAGAAGCTTCT 648
Query 848 ATAAACCGTGTCAAGTCTATGGCTGTGGAATTGAATGAAGTAAAGAAGGAGCTTGATGCG 907
|||||||||||||||||||||| |||||| || |||||||||||||| ||| | ||||||
Sbjct 649 ATAAACCGTGTCAAGTCTATGGTTGTGGAGTTAAATGAAGTAAAGAATGAGGTCGATGCG 708
Query 908 ATTACATGGAAGATAAACCATTTGAGTGACAAAGTGGGGAAGAGTCAGAACAACCTCAGG 967
|||||||||||||||||||| |||| ||||||| |||||||||||||||| || | |||
Sbjct 709 ATTACATGGAAGATAAACCACTTGAATGACAAAATGGGGAAGAGTCAGAATAATATTAGG 768
Query 968 GTTTTGGATGTAAAAAAGGCACACATACTTGAGGAA-AGGGACAGATCCTATGAAAGGAT 1026
| |||||||||| ||| ||||||||| |||||| || ||||||| |||||||||||||||
Sbjct 769 GGTTTGGATGTAGAAATGGCACACATTCTTGAG-AAGAGGGACAAATCCTATGAAAGGAT 827
Query 1027 TAAGATGTTGAGAATACAACGAGACAAAGGGAAAGCTGCCTTTTACCAGAGCCTTCCTGT 1086
||||||| |||| |||||||||||||||||||| ||||| |||| ||| ||||||| |||
Sbjct 828 TAAGATGCTGAGGATACAACGAGACAAAGGGAATGCTGCATTTTTCCATAGCCTTCTTGT 887
Query 1087 TATGAGGAAAGCTAGAGAATTGGCTGCTTCTGGAAATGTTAGAGATCTTGAAGTGTTTGC 1146
|||||| ||||||| |||||||||||||||||||||||| | ||| ||||||||||||||
Sbjct 888 TATGAGTAAAGCTAAAGAATTGGCTGCTTCTGGAAATGTAACAGAGCTTGAAGTGTTTGC 947
Query 1147 CAGCTCCGAGGCTGATAGATTCATGACTCAATGGAATGATGACAAGGCTTTTAGGGATGA 1206
|| ||| |||| |||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 948 CAACTCTGAGGTTGATAGATTCATGACTCATTGGAATGATGACAAGGCTTTTAGGGAAGA 1007
Query 1207 TTACGTAAAAAGAATATC-TCCTTCACTATGTGAAAGACAGCTGAACCAAGATGGTCGGA 1265
||||||||||||||| || | |||||| |||||||| | |||||| ||||||| ||||
Sbjct 1008 TTACGTAAAAAGAATCTCGTT-TTCACTCGGTGAAAGAGAACTGAACGAAGATGGCCGGA 1066
Query 1266 TTAAAGATCCTGAAGTTCAGGT-TGTTTGGGAAAAGAAAGTGCCGGTTAAGG----GA-G 1319
||||||||||||| |||||| | | ||||||||||| ||||| ||||||| || |
Sbjct 1067 TTAAAGATCCTGAGGTTCAGATCT-TTTGGGAAAAGCAAGTGATGGTTAAGACTATGAAG 1125
Query 1320 G----CGAGAAGGTTCACGA-GACGAATAGAGAAGATTCCAGCTCCAACTCGTCTCAATA 1374
| |||||||||||| || ||||||||||||||||||||||||||||| ||||||| |
Sbjct 1126 GGAAGCGAGAAGGTTCA-GAAGACGAATAGAGAAGATTCCAGCTCCAACTTGTCTCAAGA 1184
Query 1375 TGGAA-GTGTAATTACAGATAAACGaaaaaaaGAAACGAGGAAAAAGGCGATGGATTTCA 1433
||||| | ||||||||| ||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1185 TGGAAAG-GTAATTACACATAAAAGAAAAAAAGAAACGAAGAAAAAGGCGATGGATTTCA 1243
Query 1434 ACAGGTCGAGTGCTGAGGAGAGTGATGTTACAGATTTGGAATTCTCGGTGTATgagaaac 1493
||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1244 ACATGTCGAGTGCTGAGGAGAGTGATGTTATAGATTTGGAATTCCCGGTGTATGAGAAAC 1303
Query 1494 caaagaaggaagaagaagaggtcgatgaagaaactttgaaggagagggaaagagaagagc 1553
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1304 CAAAGAAGGAAGAAGAAGTGGTCGATGAAGAAACTTTGAAGGAGAGGAAAAGAGAAGAGC 1363
Query 1554 agttagagaaagCCCGGTTAGCAATGGAAAGGAAGAGGAAGCTTCAAGAGAAAGCTGCTG 1613
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1364 AGTTAGAGAAAGCCCGATTAGCAATGGAAAGGAAGAGGAAGCTGCAAGAGAAAGCTGCTG 1423
Query 1614 CTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAGG 1661
||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 CTAAAGCAGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAACTCAAGG 1471
Score = 346 bits (187), Expect = 4e-94
Identities = 215/228 (94%), Gaps = 3/228 (1%)
Strand=Plus/Plus
Query 1782 AAGAAAAACACCAAAAGGAGAGATCATTGTTTCCAAAGCAGAGAAGTTTCAGGTACAAAC 1841
|||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1643 AAGAGAAACACCAAAAGGAGAGATCGTTGTTTCCAAAGCAGAGAAGTTTCAGATACAAAC 1702
Query 1842 ACCGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAAGGCTC-AT 1900
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1703 ACCGCGGAAGAGGAACCGAAGCTCTCCCTAAGGCCATCCTAAACCGTAGAAGGGCTCGA- 1761
Query 1901 AAATATTGGGTTTGGGGACTTTCATCTGCTGCACTTGCTGTCGCACTCTTCCTTGTGGTT 1960
||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||
Sbjct 1762 AAATATTGGGTTTGGGGACTTTCGTCTGCTGCACTTGCTGTTGCGCTCTTCCTTGTGGTT 1821
Query 1961 TTACTTCTACGGTAAA-TTGAGAAAGGAAAGAGACATTAAAGAGGTTT 2007
|||||||||||||||| |||| ||||||||||| ||||||| ||||||
Sbjct 1822 TTACTTCTACGGTAAACTTGAAAAAGGAAAGAGGCATTAAAAAGGTTT 1869
Score = 76.8 bits (41), Expect = 6e-13
Identities = 57/64 (89%), Gaps = 4/64 (6%)
Strand=Plus/Plus
Query 1795 AAAGGAGAGATCATTGTTTCCAAA-GCAGAGAAGTTTCAGGTACAAACACCGCGGAAGAG 1853
||| |||||||| |||||| ||| | |||||||||||||||||||||||||||||||||
Sbjct 1591 AAA-GAGAGATCGTTGTTT--AAATGGAGAGAAGTTTCAGGTACAAACACCGCGGAAGAG 1647
Query 1854 GAAC 1857
|||
Sbjct 1648 AAAC 1651
> Ahg314636 jgi|Araly1|314636|fgenesh1_pm.C_scaffold_1003416
Length=2280
Score = 185 bits (100), Expect = 1e-45
Identities = 199/246 (81%), Gaps = 10/246 (4%)
Strand=Plus/Plus
Query 993 TACTTGAGGAAAGGGACAGATCCTAT-GAAAGGATTAAGATGTTGAGAATACAACGAGAC 1051
||||||| |||| |||| | || | |||||||||||| | ||||| ||||||||||||
Sbjct 422 TACTTGATCAAAGAGACAAAGCC-GTCGAAAGGATTAAGTTCTTGAGGATACAACGAGAC 480
Query 1052 AAAGGGAAAGCTGCCTTTTACCAGAGCCTTCCTGTTATGAGGAAAGCTAGAGAATTGGCT 1111
|||||||| ||||||||||||| ||| | | ||| |||| |||||||| ||| ||||||
Sbjct 481 AAAGGGAATGCTGCCTTTTACCGGAGTCGTGTTGTCATGAAGAAAGCTATAGAGTTGGCT 540
Query 1112 GCTTCTGGAAATGTTAGAGATCTTGAAGTGTTTGCC-AGCTCCGAGGCTGATAGATTC-A 1169
|||||||||||||||||||||||||||| | | || | | |||| ||| | ||| |
Sbjct 541 GCTTCTGGAAATGTTAGAGATCTTGAAGAGCTCGCTGATTTT-GAGGTTGAAA-ATTTTA 598
Query 1170 TGACTCAATGGAATGATGACAAGGCTTTTAGGGATGATTACGTA-AAAAGAATATCT-CC 1227
|| ||| ||||| ||||||||||||||||||| |||||| | |||||||| | | ||
Sbjct 599 TGTCTCGTTGGAACAATGACAAGGCTTTTAGGGAAGATTACA-AGAAAAGAATCT-TGCC 656
Query 1228 TTCACT 1233
||||||
Sbjct 657 TTCACT 662
> Ahg328945 jgi|Araly1|328945|fgenesh1_pm.C_scaffold_7001172
Length=1854
Score = 115 bits (62), Expect = 1e-24
Identities = 129/161 (80%), Gaps = 6/161 (4%)
Strand=Plus/Plus
Query 1497 agaaggaagaagaagaggtcgatgaagaaactttgaaggaga-gggaaagagaagagcag 1555
||||||||||| || ||| |||| || || ||||| | | ||||| ||||| ||
Sbjct 1370 AGAAGGAAGAAAAACCGGTTGATGCAGCTACGGCAAAGGAAATGAGAAAG-CAAGAGGAG 1428
Query 1556 -ttagagaaagCCCGGTTAGCAATGGAAAGGAAGAGGAAGCT-TCAAGAGAAAGCTGCTG 1613
|| | |||||| | ||| ||||||||||||| |||||| | |||||||||||||
Sbjct 1429 ATT-GCTAAAGCCAAGCAAGCCATGGAAAGGAAGAAGAAGCTGGC-GGAGAAAGCTGCTG 1486
Query 1614 CTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAAAAGAAA 1654
|||||||||||||||||||||||||||||||||| ||||||
Sbjct 1487 CTAAAGCTGCTATAAGAGCTCAAAAGGAAGCTGAGAAGAAA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86350585415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5