BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15350.1
Length=1964
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478965 jgi|Araly1|478965|fgenesh2_kg.3__1666__AT3G15350.1 2549 0.0
Ahg474430 jgi|Araly1|474430|fgenesh2_kg.1__4384__AT1G53100.1 745 0.0
> Ahg478965 jgi|Araly1|478965|fgenesh2_kg.3__1666__AT3G15350.1
Length=1928
Score = 2549 bits (1380), Expect = 0.0
Identities = 1662/1794 (93%), Gaps = 36/1794 (2%)
Strand=Plus/Plus
Query 186 ACAAAAGCTTCATTGCCTCGAGATTAAACAGCATCAAGACAACATCCAA-AAATTACCCA 244
|||||||||||||||||||||||||| ||||||||||| ||||| ||| ||| | |||
Sbjct 150 ACAAAAGCTTCATTGCCTCGAGATTATACAGCATCAAGGCAACA-ACAACAAAAAAGCCA 208
Query 245 GGTTTTTGTGTTTGAAACTCGAAGATTGTTGCGGATTCCTGAAAGATTAAGGCTTTTAGC 304
|||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 209 GGTTTTTGTGTTTGGAACTC-AAGATTGTTGCGGATTCCTGAAAGATTCAGGCTTTTAGC 267
Query 305 TCCAAGTTTCCAAGAGTGCTGTGAATCAGCTCCCACT-C-TGTCTCTGCATAT-TGCAAG 361
|||||||||||||||| ||||||||||||||| || | | | | || || | |||||
Sbjct 268 TCCAAGTTTCCAAGAGGGCTGTGAATCAGCTCACA-TCCGGGGATTTG-AT-TCGGCAAG 324
Query 362 ACACCGGTTTTGTTTCAGAAGTTTGTTTCTTCTTGTCTCATGATCACTAGTTTTCAGCAA 421
| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 325 AAACCGGTTTTCTTTCAGAAGTTTGTTTCTTCTTGTCTCATGATCACTAGCTTTCACCAA 384
Query 422 TGGGGTATGTAAACGTGGAGAAGAGATGGGTTTTTCCTCTTGTCATCACATCTCTCGTCT 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 385 TGGGGTATGTAAACGTGGAGAAGAGATGGGTTTTTCCTCTTGTCATCACATCTCTTGTCT 444
Query 482 GCGTTTTCCTTCTTGCAACTTCTTTCAACATGGGACTAGTCTCTTCCCTCCGAACAATCA 541
||||||| || |||||||| |||||||| ||||| ||||||||||| |||||||||||||
Sbjct 445 GCGTTTTTCTCCTTGCAACGTCTTTCAATATGGGCCTAGTCTCTTCGCTCCGAACAATCA 504
Query 542 ACGGGATTTTCTCCATCATACCTTCCCGTCTCGTCAAGAACCAAACGAGACTTGATTTTG 601
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 505 ACGGGATTTTCTCCATCATCCCTTCCCGTCTTGTCAAGAACCAAACGAGACTTGATTTTG 564
Query 602 CAGAGTCTAAAGTTGCTAGACAAACCCGTGTTTTGCCTCATGAAGACAAGCTTCCCCGTT 661
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 565 CAGAGTCTAAAGTAGCTAGACAAACCCGTGTTTCGCCTCATGAAGACAAGCTTCCCCGTT 624
Query 662 TTGCATACCTTGTTTCCGGGTCTAAAGGGGATGTAGAAAAGCTTTGGAGAACACTTAGAG 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 TTGCATACCTTGTTTCCGGGTCTAAAGGGGATGTAGAAAAGCTTTGGAGAACACTTAGAG 684
Query 722 CAGTGTACCATCCAAGAAACCAGTATGTTGTTCACTTGGATCTTGAATCACCTGTGAATG 781
||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 685 CAGTGTACCATCCCAGGAACCAGTATGTTGTTCACTTGGATCTTGAATCACCGGTGGATG 744
Query 782 AGAGATTAGAGCTGGCCTCTCGGATTAATAACGATCCTATGTACTCTAAAACCGGGAATG 841
||||||||||||| || |||||||||||||| ||||||||||| ||| ||||||||||||
Sbjct 745 AGAGATTAGAGCTAGCTTCTCGGATTAATAATGATCCTATGTATTCTGAAACCGGGAATG 804
Query 842 TATATATGATAACCAAGGCTAACCTTGTGACATATAAAGGACCAACGATGGTGGCAAATA 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 TATATATGATAACCAAGGCTAACCTTGTGACATATAAAGGACCAACGATGGTGGCAAATA 864
Query 902 CTCTTCACGCTTGTGCTG-TTCTTCTCAAGAGAAATGCGAACTGGGATTGGTTTATTAAC 960
|||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 865 CTCTTCACGCTTGTGC-GATTCTTCTTAAGAGAAGCGCGAACTGGGATTGGTTTATTAAC 923
Query 961 CTTAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATCTGCTTCATACGTTTTCAACA 1020
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 924 CTCAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATCTGCTTCAAACGTTTTCGACA 983
Query 1021 TTGGACCGGAACCTCAACTTTATCGAACACACAAGTCAACTGGGATGGAAAGAGGAGAAG 1080
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 984 TTGGATCGGAACCTCAACTTTATCGAACACACAAGTCAACTGGGTTGGAAAGAGGAGAAG 1043
Query 1081 CGAGCACAGCCATTAATGATTGATCCTGGACTCTACTTGTTGAACAAATCTGATATTTAC 1140
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1044 CGAGCACAGCCATTAATGATTGATCCTGGACTCTACTTGTTGAACAAATCAGATATTTAC 1103
Query 1141 TGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTTAAGTTATTCACTGGATCAGCTTGG 1200
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1104 TGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTCAAGTTATTCACTGGATCAGCTTGG 1163
Query 1201 ATGGCTCTATCACGCCCGTTTGTAGAGTATTGCATATGGGGATGGGACAATTTACCACGA 1260
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ATGGCTCTATCACGCCCATTTGTAGAGTATTGCATATGGGGATGGGACAATTTACCACGA 1223
Query 1261 ACTCTCCTAATGTATTACACCAACTTCGTTTCATCGCCCGAAGGTTACTTCCAGACCGTG 1320
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1224 ACCCTCCTAATGTATTACACCAACTTCGTTTCATCACCCGAAGGTTACTTCCAGACAGTG 1283
Query 1321 ATTTGCAACGTGCCTGAGTTTGCAAAAACTGCAGTAAACCATGACCTACACTACATTTCC 1380
|||||||| || || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1284 ATTTGCAATGTACCCGAGTTTGCAAAAACTGCAGTAAACCATGACCTCCACTACATTTCC 1343
Query 1381 TGGGACAATCCGCCGCAGCAGCACCCACACGTGTTGTCACTCAACGACACAATGCCGATG 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1344 TGGGACAATCCGCCGCAGCAGCACCCACACGTGTTGTCACTCAACGACACAATGCAGATG 1403
Query 1441 ATATGGAGCGGTGCTGCGTTTGCTAGGAAATTCAGAAGAGATGAT-GAAGTACTTAATAA 1499
|||| ||| |||||||||||||||||||||||||||||||| || || |||||| ||
Sbjct 1404 ATATCGAGTGGTGCTGCGTTTGCTAGGAAATTCAGAAGAGACGACAGA-GTACTTGATCT 1462
Query 1500 GATCGATAAGGAATTACTTAAACGGAGGAATGATAAAGATAGTTTTACTCCTGGTGGATG 1559
||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1463 TATCGATAAGGAATTACTTAGACGGAGGAATGGTAAAGATAGTTTTACTCCTGGTGGATG 1522
Query 1560 GTGCAGTGGGAAACCAAAATGCTCCAGGGTCGGTAATGTGGCTAAGATTGTTCCTAGCTT 1619
|||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| |
Sbjct 1523 GTGCAGTGGGAAACCAAAATGCTCCAAGGTCGGTGACATGGCTAAGATTGATCCTAGCGT 1582
Query 1620 TGGAGCTCAGAGGCTTCAAGGACTTGTGACCAGGTTAGTCAACGAAGCTAATACAGGAGT 1679
||||||||||||||| || |||||||||| |||||||||||||||||||| |||||||||
Sbjct 1583 TGGAGCTCAGAGGCTCCAGGGACTTGTGAACAGGTTAGTCAACGAAGCTATTACAGGAGT 1642
Query 1680 TAGTCAGTGTAAATAGAAAGAATTCGAAGaaaaaaaG-AACCATTATCGAAG-TAATGGA 1737
||||||||||||||||| |||||||||||||||||| || |||| | | | | || |
Sbjct 1643 TAGTCAGTGTAAATAGATCGAATTCGAAGAAAAAAAGGAATCATTTTGGG-GCTT-TG-A 1699
Query 1738 GAGCGACTGTCATGAT-ATATATATT--TATACAACATATAGAGAATCTTGCAGTTGCAG 1794
| ||| | ||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1700 -ATCGAAT-TCATGATGATATATATAAATATACAACATATAGAGAATCTTGCAGTTGCAG 1757
Query 1795 GCTTTAGATAAGACTATTAGACATTGTTTGCATTGAGTAGAGATGCCTTGTAATGCCACG 1854
|||||||| || |||||||| |||||||| |||||||||||||||||||||| |||||||
Sbjct 1758 GCTTTAGAAAA-ACTATTAGCCATTGTTTTCATTGAGTAGAGATGCCTTGTA-TGCCACG 1815
Query 1855 ACCTACTGGGATTCA-TTTTTGTTTGTTTGAAGTCATCTCCTTCAAAAT-C----CAA-T 1907
||||||||||||| | ||||| || |||||||||||||||||||||| | | ||| |
Sbjct 1816 ACCTACTGGGATTAAATTTTTCTT-GTTTGAAGTCATCTCCTTCAAATTTCAAATCAAAT 1874
Query 1908 AAAA-TTATAACC-tttttttATT-GAGATGTTTTCAGTTATAACAGAATATAC 1958
|||| |||||||| ||||||| || |||||||||||| ||||||||||||||||
Sbjct 1875 AAAAATTATAACCCTTTTTTTTTTTGAGATGTTTTCAATTATAACAGAATATAC 1928
Score = 148 bits (80), Expect = 1e-34
Identities = 142/168 (85%), Gaps = 20/168 (12%)
Strand=Plus/Plus
Query 1 ATAGATTCCAGAAATAAAGGAACAGAGAGACACACACAAGATaaaaaaaaaaGTAACGAA 60
|||||||||||||||||||||||||||||||| | |||||| ||||||||
Sbjct 1 ATAGATTCCAGAAATAAAGGAACAGAGAGACA-A-------TAAAAA-----GTAACGAA 47
Query 61 ATTGAGAGCTGAATGAAACCAAAGATTTGGAATTTTTCTTTGTA-TAGT-T--TTT--CC 114
||| |||| |||| ||| ||||||||||||||||||||||||| |||| | ||| ||
Sbjct 48 ATTTAGAGGTGAAAGAA-CCAAAGATTTGGAATTTTTCTTTGTTGTAGTATAATTTTTCC 106
Query 115 ACGAATCGGAGTATCACACACGGAGTGTCCCGTGTTCTTGAGCACAAA 162
||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 107 ACGAATCGGAGTATCTCACACGAAGTGTCCCGTGTTCTTGAGCACAAA 154
> Ahg474430 jgi|Araly1|474430|fgenesh2_kg.1__4384__AT1G53100.1
Length=1386
Score = 745 bits (403), Expect = 0.0
Identities = 851/1060 (80%), Gaps = 59/1060 (6%)
Strand=Plus/Plus
Query 646 GACAAGCTTCCC-CGTTTTGCATACCTTGTTTCCGGG-TCTAAAGGGGATGTAGAAAAG- 702
||||||| |||| ||||| || |||||||||| |||| |||||||| ||| | | ||||
Sbjct 297 GACAAGC-TCCCACGTTTCGCTTACCTTGTTT-CGGGATCTAAAGGAGATCTTG-AAAGC 353
Query 703 CTTTGGAGAACACTTAGAGCAGTGTACCATCCAAGAAACCAGTATGTTGTTCACTTGGAT 762
||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||
Sbjct 354 CTTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTGGAT 413
Query 763 CTTGAATCACCTG-TGAATGAGAGATTAGAGCTGGCCTCTCGGATTAATAACGATCCTAT 821
||||||||||| | || ||||||| | |||| |||| ||||| ||||| |||||||||||
Sbjct 414 CTTGAATCACCCGTTG-ATGAGAGGTCAGAGTTGGCTTCTCGCATTAAAAACGATCCTAT 472
Query 822 GTACTCTAAAACCGGGAATGTATATATGATAACCAAGGCTAACCTTGTGACATATAAAGG 881
||| || |||| |||||||| ||||||||| |||| ||||| |||||||| |||| ||
Sbjct 473 GTATTCAAAAATAGGGAATGTCTATATGATAGCCAAAGCTAATCTTGTGACTTATACCGG 532
Query 882 ACCAACGATGGTGGCAAATACTCTTCACGCTTGTGCTG-TTCTTCTCAAGAGAAATGCGA 940
|||||| |||||||| ||||| |||||||| || || | |||| || || |||| ||
Sbjct 533 ACCAACAATGGTGGCGAATACCCTTCACGCATGCGC-GATTCTACTTAAAAGAACCCCGG 591
Query 941 ACTGGGATTGGTTTATTAACCTTAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATC 1000
| |||||||||||||| || ||||||||||| |||||||| || ||||| ||||| ||||
Sbjct 592 ATTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGACGATC 651
Query 1001 TGCTTCATACGTTTTCAACATTGGACCGGAACCTCAACTTTATCGAACACACAAGTCAAC 1060
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 652 TGATTCATACGTTTTCAACATTGGACCGGAACCTCAACTTTATCGAACACACAAGTCG-C 710
Query 1061 TG-GGATGGAAAGAGGAGAAGCGAGCACA-GCCATTAATGATTGATCCTGGACTCTACT- 1117
| || |||||| | ||||||| ||| | ||||||| |||||||||| |||||||| |
Sbjct 711 TTAGGCTGGAAAAACAAGAAGCGGGCA-ATGCCATTAGTGATTGATCCCGGACTCTA-TA 768
Query 1118 TGTTGAACAAATCTGATATTT-ACTGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTT 1176
|||| |||||||| | ||| | ||||||| ||| |||||||| ||| |||| |||
Sbjct 769 TGTTAAACAAATCAAACGTTTTA-TGGGTCAGGCCTAATCGAAGTTTACCAGCTGC-TTT 826
Query 1177 -AAGTTATTCACTGGATCAGCTTGGATGGCTCTATCACGCCCGTTTGTAGAGTAT-TGCA 1234
|||||||| || ||||||||||||||||||||||| | | | || || |||||| | ||
Sbjct 827 CAAGTTATTTACCGGATCAGCTTGGATGGCTCTATCGCACTCATTCGTGGAGTATAT-CA 885
Query 1235 TATGGGGATGGGACAATTTACCACGAACTCTCCTAATGTATTACACCAACTTCGTTTCAT 1294
||||||| ||||||||||||||| ||||| | || ||||| |||||||| |||||||| |
Sbjct 886 TATGGGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTT 945
Query 1295 CGCCCGAAGGTTACTTCCAGACCGTGATTTGCAACGTGCCTGAGTT-TGCAAAAACTGCA 1353
| || |||||||||||||| || || || || |||||||||||||| | ||||| | ||
Sbjct 946 CTCCTGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACC-GCG 1004
Query 1354 GTAAACCATGACCTACACTACATTTCCTGGGACAATCCGCCGCAG-CAGCACCCACACGT 1412
|| |||||||| || ||||||||| | ||||| || |||||| || ||||| || | | |
Sbjct 1005 GTGAACCATGATCTTCACTACATTGCATGGGATAAGCCGCCG-AGGCAGCATCCTCGCAT 1063
Query 1413 GTTGTCACTCAACGACACAATGCCGAT-GAT-A-TG-GAGCGG-TGCTGCGTTTGCTAGG 1467
|||||| || || || ||| || || ||| | || |||||| | |||| |||| | ||
Sbjct 1064 GTTGTCCCT-AA-GAGACA-TGG-GAAAGATGACTGCGAGCGGAT-CTGCATTTGGTCGG 1118
Query 1468 AAATTCAGAAGAGATGATGA-AGTACTTA-ATAAGATCGATAAGGAATTACTTAAACGGA 1525
|||||||||||| |||| | ||| || |||||||||||||| | | ||| ||||
Sbjct 1119 AAATTCAGAAGAAATGAC-ACAGTT-TTGGATAAGATCGATAAGTTACTGCTTCTTCGGA 1176
Query 1526 GGAATGATAAAGATAGTTTTACTCCTGGTGGATGGTGCAGTGGGAAACCAAAATGCTCCA 1585
||| || | || |||||||||| || || |||||| ||||||||||| | |||||
Sbjct 1177 TGAAGGA-A--GACGGTTTTACTCCCGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTC-- 1231
Query 1586 GG--GTCGGTA-ATGTGGCTAAGATT-GTTCCTAGCTTTGGAGCTCAGAGGCTTCAAGGA 1641
|| |||| | | ||||||| ||| | ||||||| || ||| |||||| |||||
Sbjct 1232 GGTTGTCGA-AGACGTGGCTAGGATCAGG-CCTAGCTCAGGGGCTGTGAGGCT-CAAGGG 1288
Query 1642 -CTTGT-GACCAGGTTAGTCAACGAAG-CTAA-TACAGGA 1677
||||| || | |||||| | || || |||| | |||||
Sbjct 1289 GCTTGTAGAT-ATGTTAGTTA-CGGAGGCTAAAT-CAGGA 1325
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73818894810
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5