BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15350.1 Length=1964 Score E Sequences producing significant alignments: (Bits) Value Ahg478965 jgi|Araly1|478965|fgenesh2_kg.3__1666__AT3G15350.1 2549 0.0 Ahg474430 jgi|Araly1|474430|fgenesh2_kg.1__4384__AT1G53100.1 745 0.0 > Ahg478965 jgi|Araly1|478965|fgenesh2_kg.3__1666__AT3G15350.1 Length=1928 Score = 2549 bits (1380), Expect = 0.0 Identities = 1662/1794 (93%), Gaps = 36/1794 (2%) Strand=Plus/Plus Query 186 ACAAAAGCTTCATTGCCTCGAGATTAAACAGCATCAAGACAACATCCAA-AAATTACCCA 244 |||||||||||||||||||||||||| ||||||||||| ||||| ||| ||| | ||| Sbjct 150 ACAAAAGCTTCATTGCCTCGAGATTATACAGCATCAAGGCAACA-ACAACAAAAAAGCCA 208 Query 245 GGTTTTTGTGTTTGAAACTCGAAGATTGTTGCGGATTCCTGAAAGATTAAGGCTTTTAGC 304 |||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||| Sbjct 209 GGTTTTTGTGTTTGGAACTC-AAGATTGTTGCGGATTCCTGAAAGATTCAGGCTTTTAGC 267 Query 305 TCCAAGTTTCCAAGAGTGCTGTGAATCAGCTCCCACT-C-TGTCTCTGCATAT-TGCAAG 361 |||||||||||||||| ||||||||||||||| || | | | | || || | ||||| Sbjct 268 TCCAAGTTTCCAAGAGGGCTGTGAATCAGCTCACA-TCCGGGGATTTG-AT-TCGGCAAG 324 Query 362 ACACCGGTTTTGTTTCAGAAGTTTGTTTCTTCTTGTCTCATGATCACTAGTTTTCAGCAA 421 | ||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 325 AAACCGGTTTTCTTTCAGAAGTTTGTTTCTTCTTGTCTCATGATCACTAGCTTTCACCAA 384 Query 422 TGGGGTATGTAAACGTGGAGAAGAGATGGGTTTTTCCTCTTGTCATCACATCTCTCGTCT 481 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 385 TGGGGTATGTAAACGTGGAGAAGAGATGGGTTTTTCCTCTTGTCATCACATCTCTTGTCT 444 Query 482 GCGTTTTCCTTCTTGCAACTTCTTTCAACATGGGACTAGTCTCTTCCCTCCGAACAATCA 541 ||||||| || |||||||| |||||||| ||||| ||||||||||| ||||||||||||| Sbjct 445 GCGTTTTTCTCCTTGCAACGTCTTTCAATATGGGCCTAGTCTCTTCGCTCCGAACAATCA 504 Query 542 ACGGGATTTTCTCCATCATACCTTCCCGTCTCGTCAAGAACCAAACGAGACTTGATTTTG 601 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 505 ACGGGATTTTCTCCATCATCCCTTCCCGTCTTGTCAAGAACCAAACGAGACTTGATTTTG 564 Query 602 CAGAGTCTAAAGTTGCTAGACAAACCCGTGTTTTGCCTCATGAAGACAAGCTTCCCCGTT 661 ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 565 CAGAGTCTAAAGTAGCTAGACAAACCCGTGTTTCGCCTCATGAAGACAAGCTTCCCCGTT 624 Query 662 TTGCATACCTTGTTTCCGGGTCTAAAGGGGATGTAGAAAAGCTTTGGAGAACACTTAGAG 721 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 625 TTGCATACCTTGTTTCCGGGTCTAAAGGGGATGTAGAAAAGCTTTGGAGAACACTTAGAG 684 Query 722 CAGTGTACCATCCAAGAAACCAGTATGTTGTTCACTTGGATCTTGAATCACCTGTGAATG 781 ||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 685 CAGTGTACCATCCCAGGAACCAGTATGTTGTTCACTTGGATCTTGAATCACCGGTGGATG 744 Query 782 AGAGATTAGAGCTGGCCTCTCGGATTAATAACGATCCTATGTACTCTAAAACCGGGAATG 841 ||||||||||||| || |||||||||||||| ||||||||||| ||| |||||||||||| Sbjct 745 AGAGATTAGAGCTAGCTTCTCGGATTAATAATGATCCTATGTATTCTGAAACCGGGAATG 804 Query 842 TATATATGATAACCAAGGCTAACCTTGTGACATATAAAGGACCAACGATGGTGGCAAATA 901 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 805 TATATATGATAACCAAGGCTAACCTTGTGACATATAAAGGACCAACGATGGTGGCAAATA 864 Query 902 CTCTTCACGCTTGTGCTG-TTCTTCTCAAGAGAAATGCGAACTGGGATTGGTTTATTAAC 960 |||||||||||||||| | ||||||| ||||||| |||||||||||||||||||||||| Sbjct 865 CTCTTCACGCTTGTGC-GATTCTTCTTAAGAGAAGCGCGAACTGGGATTGGTTTATTAAC 923 Query 961 CTTAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATCTGCTTCATACGTTTTCAACA 1020 || |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 924 CTCAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATCTGCTTCAAACGTTTTCGACA 983 Query 1021 TTGGACCGGAACCTCAACTTTATCGAACACACAAGTCAACTGGGATGGAAAGAGGAGAAG 1080 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 984 TTGGATCGGAACCTCAACTTTATCGAACACACAAGTCAACTGGGTTGGAAAGAGGAGAAG 1043 Query 1081 CGAGCACAGCCATTAATGATTGATCCTGGACTCTACTTGTTGAACAAATCTGATATTTAC 1140 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1044 CGAGCACAGCCATTAATGATTGATCCTGGACTCTACTTGTTGAACAAATCAGATATTTAC 1103 Query 1141 TGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTTAAGTTATTCACTGGATCAGCTTGG 1200 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1104 TGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTCAAGTTATTCACTGGATCAGCTTGG 1163 Query 1201 ATGGCTCTATCACGCCCGTTTGTAGAGTATTGCATATGGGGATGGGACAATTTACCACGA 1260 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1164 ATGGCTCTATCACGCCCATTTGTAGAGTATTGCATATGGGGATGGGACAATTTACCACGA 1223 Query 1261 ACTCTCCTAATGTATTACACCAACTTCGTTTCATCGCCCGAAGGTTACTTCCAGACCGTG 1320 || |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1224 ACCCTCCTAATGTATTACACCAACTTCGTTTCATCACCCGAAGGTTACTTCCAGACAGTG 1283 Query 1321 ATTTGCAACGTGCCTGAGTTTGCAAAAACTGCAGTAAACCATGACCTACACTACATTTCC 1380 |||||||| || || |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1284 ATTTGCAATGTACCCGAGTTTGCAAAAACTGCAGTAAACCATGACCTCCACTACATTTCC 1343 Query 1381 TGGGACAATCCGCCGCAGCAGCACCCACACGTGTTGTCACTCAACGACACAATGCCGATG 1440 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1344 TGGGACAATCCGCCGCAGCAGCACCCACACGTGTTGTCACTCAACGACACAATGCAGATG 1403 Query 1441 ATATGGAGCGGTGCTGCGTTTGCTAGGAAATTCAGAAGAGATGAT-GAAGTACTTAATAA 1499 |||| ||| |||||||||||||||||||||||||||||||| || || |||||| || Sbjct 1404 ATATCGAGTGGTGCTGCGTTTGCTAGGAAATTCAGAAGAGACGACAGA-GTACTTGATCT 1462 Query 1500 GATCGATAAGGAATTACTTAAACGGAGGAATGATAAAGATAGTTTTACTCCTGGTGGATG 1559 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1463 TATCGATAAGGAATTACTTAGACGGAGGAATGGTAAAGATAGTTTTACTCCTGGTGGATG 1522 Query 1560 GTGCAGTGGGAAACCAAAATGCTCCAGGGTCGGTAATGTGGCTAAGATTGTTCCTAGCTT 1619 |||||||||||||||||||||||||| ||||||| | |||||||||||| ||||||| | Sbjct 1523 GTGCAGTGGGAAACCAAAATGCTCCAAGGTCGGTGACATGGCTAAGATTGATCCTAGCGT 1582 Query 1620 TGGAGCTCAGAGGCTTCAAGGACTTGTGACCAGGTTAGTCAACGAAGCTAATACAGGAGT 1679 ||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||| Sbjct 1583 TGGAGCTCAGAGGCTCCAGGGACTTGTGAACAGGTTAGTCAACGAAGCTATTACAGGAGT 1642 Query 1680 TAGTCAGTGTAAATAGAAAGAATTCGAAGaaaaaaaG-AACCATTATCGAAG-TAATGGA 1737 ||||||||||||||||| |||||||||||||||||| || |||| | | | | || | Sbjct 1643 TAGTCAGTGTAAATAGATCGAATTCGAAGAAAAAAAGGAATCATTTTGGG-GCTT-TG-A 1699 Query 1738 GAGCGACTGTCATGAT-ATATATATT--TATACAACATATAGAGAATCTTGCAGTTGCAG 1794 | ||| | ||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1700 -ATCGAAT-TCATGATGATATATATAAATATACAACATATAGAGAATCTTGCAGTTGCAG 1757 Query 1795 GCTTTAGATAAGACTATTAGACATTGTTTGCATTGAGTAGAGATGCCTTGTAATGCCACG 1854 |||||||| || |||||||| |||||||| |||||||||||||||||||||| ||||||| Sbjct 1758 GCTTTAGAAAA-ACTATTAGCCATTGTTTTCATTGAGTAGAGATGCCTTGTA-TGCCACG 1815 Query 1855 ACCTACTGGGATTCA-TTTTTGTTTGTTTGAAGTCATCTCCTTCAAAAT-C----CAA-T 1907 ||||||||||||| | ||||| || |||||||||||||||||||||| | | ||| | Sbjct 1816 ACCTACTGGGATTAAATTTTTCTT-GTTTGAAGTCATCTCCTTCAAATTTCAAATCAAAT 1874 Query 1908 AAAA-TTATAACC-tttttttATT-GAGATGTTTTCAGTTATAACAGAATATAC 1958 |||| |||||||| ||||||| || |||||||||||| |||||||||||||||| Sbjct 1875 AAAAATTATAACCCTTTTTTTTTTTGAGATGTTTTCAATTATAACAGAATATAC 1928 Score = 148 bits (80), Expect = 1e-34 Identities = 142/168 (85%), Gaps = 20/168 (12%) Strand=Plus/Plus Query 1 ATAGATTCCAGAAATAAAGGAACAGAGAGACACACACAAGATaaaaaaaaaaGTAACGAA 60 |||||||||||||||||||||||||||||||| | |||||| |||||||| Sbjct 1 ATAGATTCCAGAAATAAAGGAACAGAGAGACA-A-------TAAAAA-----GTAACGAA 47 Query 61 ATTGAGAGCTGAATGAAACCAAAGATTTGGAATTTTTCTTTGTA-TAGT-T--TTT--CC 114 ||| |||| |||| ||| ||||||||||||||||||||||||| |||| | ||| || Sbjct 48 ATTTAGAGGTGAAAGAA-CCAAAGATTTGGAATTTTTCTTTGTTGTAGTATAATTTTTCC 106 Query 115 ACGAATCGGAGTATCACACACGGAGTGTCCCGTGTTCTTGAGCACAAA 162 ||||||||||||||| |||||| ||||||||||||||||||||||||| Sbjct 107 ACGAATCGGAGTATCTCACACGAAGTGTCCCGTGTTCTTGAGCACAAA 154 > Ahg474430 jgi|Araly1|474430|fgenesh2_kg.1__4384__AT1G53100.1 Length=1386 Score = 745 bits (403), Expect = 0.0 Identities = 851/1060 (80%), Gaps = 59/1060 (6%) Strand=Plus/Plus Query 646 GACAAGCTTCCC-CGTTTTGCATACCTTGTTTCCGGG-TCTAAAGGGGATGTAGAAAAG- 702 ||||||| |||| ||||| || |||||||||| |||| |||||||| ||| | | |||| Sbjct 297 GACAAGC-TCCCACGTTTCGCTTACCTTGTTT-CGGGATCTAAAGGAGATCTTG-AAAGC 353 Query 703 CTTTGGAGAACACTTAGAGCAGTGTACCATCCAAGAAACCAGTATGTTGTTCACTTGGAT 762 ||||||||||| ||||||||| ||||||||||||||||||| || |||||||||||||| Sbjct 354 CTTTGGAGAACTCTTAGAGCATTGTACCATCCAAGAAACCAATACATTGTTCACTTGGAT 413 Query 763 CTTGAATCACCTG-TGAATGAGAGATTAGAGCTGGCCTCTCGGATTAATAACGATCCTAT 821 ||||||||||| | || ||||||| | |||| |||| ||||| ||||| ||||||||||| Sbjct 414 CTTGAATCACCCGTTG-ATGAGAGGTCAGAGTTGGCTTCTCGCATTAAAAACGATCCTAT 472 Query 822 GTACTCTAAAACCGGGAATGTATATATGATAACCAAGGCTAACCTTGTGACATATAAAGG 881 ||| || |||| |||||||| ||||||||| |||| ||||| |||||||| |||| || Sbjct 473 GTATTCAAAAATAGGGAATGTCTATATGATAGCCAAAGCTAATCTTGTGACTTATACCGG 532 Query 882 ACCAACGATGGTGGCAAATACTCTTCACGCTTGTGCTG-TTCTTCTCAAGAGAAATGCGA 940 |||||| |||||||| ||||| |||||||| || || | |||| || || |||| || Sbjct 533 ACCAACAATGGTGGCGAATACCCTTCACGCATGCGC-GATTCTACTTAAAAGAACCCCGG 591 Query 941 ACTGGGATTGGTTTATTAACCTTAGTGCTTCAGATTATCCTCTGGTGACCCAAGATGATC 1000 | |||||||||||||| || ||||||||||| |||||||| || ||||| ||||| |||| Sbjct 592 ATTGGGATTGGTTTATCAATCTTAGTGCTTCGGATTATCCCCTCGTGACTCAAGACGATC 651 Query 1001 TGCTTCATACGTTTTCAACATTGGACCGGAACCTCAACTTTATCGAACACACAAGTCAAC 1060 || |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 652 TGATTCATACGTTTTCAACATTGGACCGGAACCTCAACTTTATCGAACACACAAGTCG-C 710 Query 1061 TG-GGATGGAAAGAGGAGAAGCGAGCACA-GCCATTAATGATTGATCCTGGACTCTACT- 1117 | || |||||| | ||||||| ||| | ||||||| |||||||||| |||||||| | Sbjct 711 TTAGGCTGGAAAAACAAGAAGCGGGCA-ATGCCATTAGTGATTGATCCCGGACTCTA-TA 768 Query 1118 TGTTGAACAAATCTGATATTT-ACTGGGTCACACCTCGCCGAAGTTTGCCAACTGCCTTT 1176 |||| |||||||| | ||| | ||||||| ||| |||||||| ||| |||| ||| Sbjct 769 TGTTAAACAAATCAAACGTTTTA-TGGGTCAGGCCTAATCGAAGTTTACCAGCTGC-TTT 826 Query 1177 -AAGTTATTCACTGGATCAGCTTGGATGGCTCTATCACGCCCGTTTGTAGAGTAT-TGCA 1234 |||||||| || ||||||||||||||||||||||| | | | || || |||||| | || Sbjct 827 CAAGTTATTTACCGGATCAGCTTGGATGGCTCTATCGCACTCATTCGTGGAGTATAT-CA 885 Query 1235 TATGGGGATGGGACAATTTACCACGAACTCTCCTAATGTATTACACCAACTTCGTTTCAT 1294 ||||||| ||||||||||||||| ||||| | || ||||| |||||||| |||||||| | Sbjct 886 TATGGGGTTGGGACAATTTACCAAGAACTTTACTCATGTACTACACCAATTTCGTTTCTT 945 Query 1295 CGCCCGAAGGTTACTTCCAGACCGTGATTTGCAACGTGCCTGAGTT-TGCAAAAACTGCA 1353 | || |||||||||||||| || || || || |||||||||||||| | ||||| | || Sbjct 946 CTCCTGAAGGTTACTTCCATACAGTCATATGTAACGTGCCTGAGTTCTCCAAAACC-GCG 1004 Query 1354 GTAAACCATGACCTACACTACATTTCCTGGGACAATCCGCCGCAG-CAGCACCCACACGT 1412 || |||||||| || ||||||||| | ||||| || |||||| || ||||| || | | | Sbjct 1005 GTGAACCATGATCTTCACTACATTGCATGGGATAAGCCGCCG-AGGCAGCATCCTCGCAT 1063 Query 1413 GTTGTCACTCAACGACACAATGCCGAT-GAT-A-TG-GAGCGG-TGCTGCGTTTGCTAGG 1467 |||||| || || || ||| || || ||| | || |||||| | |||| |||| | || Sbjct 1064 GTTGTCCCT-AA-GAGACA-TGG-GAAAGATGACTGCGAGCGGAT-CTGCATTTGGTCGG 1118 Query 1468 AAATTCAGAAGAGATGATGA-AGTACTTA-ATAAGATCGATAAGGAATTACTTAAACGGA 1525 |||||||||||| |||| | ||| || |||||||||||||| | | ||| |||| Sbjct 1119 AAATTCAGAAGAAATGAC-ACAGTT-TTGGATAAGATCGATAAGTTACTGCTTCTTCGGA 1176 Query 1526 GGAATGATAAAGATAGTTTTACTCCTGGTGGATGGTGCAGTGGGAAACCAAAATGCTCCA 1585 ||| || | || |||||||||| || || |||||| ||||||||||| | ||||| Sbjct 1177 TGAAGGA-A--GACGGTTTTACTCCCGGCGGTTGGTGCGGTGGGAAACCAGAGTGCTC-- 1231 Query 1586 GG--GTCGGTA-ATGTGGCTAAGATT-GTTCCTAGCTTTGGAGCTCAGAGGCTTCAAGGA 1641 || |||| | | ||||||| ||| | ||||||| || ||| |||||| ||||| Sbjct 1232 GGTTGTCGA-AGACGTGGCTAGGATCAGG-CCTAGCTCAGGGGCTGTGAGGCT-CAAGGG 1288 Query 1642 -CTTGT-GACCAGGTTAGTCAACGAAG-CTAA-TACAGGA 1677 ||||| || | |||||| | || || |||| | ||||| Sbjct 1289 GCTTGTAGAT-ATGTTAGTTA-CGGAGGCTAAAT-CAGGA 1325 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73818894810 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5