BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15351.1
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478970 jgi|Araly1|478970|fgenesh2_kg.3__1671__AT3G15351.1 887 0.0
Ahg323081 jgi|Araly1|323081|fgenesh1_pm.C_scaffold_5000625 776 0.0
Ahg952423 jgi|Araly1|952423|scaffold_7000005.1 438 2e-122
> Ahg478970 jgi|Araly1|478970|fgenesh2_kg.3__1671__AT3G15351.1
Length=591
Score = 887 bits (480), Expect = 0.0
Identities = 557/594 (94%), Gaps = 6/594 (1%)
Strand=Plus/Plus
Query 1 ATTGCGTCACCGAGATTCTCACCGGACCTCTGCTTATTAAATCTTCGTCTGTAAATCCAT 60
||||||||||||||||||||||||| ||||||||| || |||||| |||| |||||||||
Sbjct 1 ATTGCGTCACCGAGATTCTCACCGGTCCTCTGCTTTTTGAATCTTTGTCTTTAAATCCAT 60
Query 61 TTAAA-G--ACTAGAGATGGATTTGGATCCAAAGAAGTTTGCTGCACTATTGGACAAAAT 117
| ||| | | |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 61 TCAAAGGTTATTAGAGATGGAGTTGGATCCAAAGAAGTTTGCGGCACTATTGGACAAAAT 120
Query 118 TGAAGCTGAAGCTGATGAGTTTCTATTAGCTCGAAATCAGATGGTGGAGAATGACAAGGA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAAGCTGAAGCTGATGAGTTTCTATTAGCTCGAAATCAGATGGTGGAGAATGACAAGGA 180
Query 178 GAGGAATGCAAACCGAGAGGCTCTTACAGCACTAAGGAAGAGAGCTCGGACAACAAAGAC 237
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 181 GAGGAATGCAAACCGAGAGGCTCTTACAGCACTTAGGAAGAGAGCTCGGACAACAAAGAC 240
Query 238 TAGTGTTATGTCTCCATTTGATTCTATGATGAAGGATATCCATGGGAGCTCAACGAAACC 297
||||||| |||||||||| |||||||||||||| ||||| |||| |||||||||||||||
Sbjct 241 TAGTGTTCTGTCTCCATTCGATTCTATGATGAAAGATATACATGTGAGCTCAACGAAACC 300
Query 298 TTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGACTCTAGTGAACCCACCTGGAT 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 301 TTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGATTCTAGTGAACCCAATTGGAT 360
Query 358 GATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCT 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCT 420
Query 418 AGAGAAAGATGAAGAGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGA 477
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||
Sbjct 421 AGAGAAAGATGAAGAGAAAATGGAGTTTGAATCGAAGAAATTGCAGAGCCTAGTGAAGGA 480
Query 478 AAAAGCTCTGTTTATATCGGAACTAGGGGCTCTTGCTGATGGTATTTCTCCTGGCGTTAT 537
||||||||||||||||| ||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 481 GAAAGCTCTGTTTATATCAGAACTAGGGGCTCTTGCTGATAGTACTTCTCCAGGCGTTAT 540
Query 538 CAGATCGTTGGTGGCTTTAGAGGACAAACCTTAAGTTAAGTAGAAGAAGTAGAA 591
||||||||||||||||||| |||| || | | || | || ||||||||||||||
Sbjct 541 CAGATCGTTGGTGGCTTTAAAGGATAA-C-TAAACTAAA-TAGAAGAAGTAGAA 591
> Ahg323081 jgi|Araly1|323081|fgenesh1_pm.C_scaffold_5000625
Length=507
Score = 776 bits (420), Expect = 0.0
Identities = 480/509 (94%), Gaps = 4/509 (1%)
Strand=Plus/Plus
Query 74 ATGGATTTGGATCCAAAGAAGTTTGCTGCACTATTGGACAAAATTGAAGCTGAAGCTGAT 133
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTTGGATCCAAAGAAGTTTGTTGCACTATTGGACAAAATTGAAGCTGAAGCTGAT 60
Query 134 GAGTTTCTAT-TAGCTCGAAATCAGATGGTGGAGAATGACAAGGAGAGGAATGCAAACCG 192
|||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGTTTCT-TCTAGCTCGAAACCAGATGGTGGAGAATGACAAGGAGAGGAATGCAAACCG 119
Query 193 AGAGGCTCTTACAGCACTAAGGAAGAGAGCTCGGACAACAAAGACTAGTGTTATGT-CTC 251
|||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |||
Sbjct 120 AGAGGCTCTTACAGCACTTAGGAAGAGAGCTCGGACAACAAAGACTAGTGTTCT-TACTC 178
Query 252 CATTTGATTCTATGATGAAGGATATCCATGGGAGCTCAACGAAACCTTTGGTCCAAGAAG 311
|||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||||||
Sbjct 179 CATTCGATTCTATGATGAAAGATATACATGTGAGCTCAACGAAACCTTTGGTCCAAGAAG 238
Query 312 TTTGCTCCACATGTGGATCCCATGACTCTAGTGAACCCACCTGGATGATGCTCCCAGGAG 371
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 239 TTTGCTCCACATGTGGATCCCATGACTCTAGTGAACCCACTTGGATGATGCTCCCAGGAG 298
Query 372 CTGATCTTTTTGCTGCAATTCCGTTTCATGCTGTGCATACAATGCTAGAGAAAGATGAAG 431
|||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 299 CTGATCTTTTTGCTGCGATTCCGTTTCATGCTTTGCATACAATGCTTGAGAAAGATGAAG 358
Query 432 AGAAAATGGAGTTTGAATCGAAGAAGTTACAGAGCTTAGTGAAGGAAAAAGCTCTGTTTA 491
||||||||||||||||||||||||| || |||||| |||||||||| |||||||||||||
Sbjct 359 AGAAAATGGAGTTTGAATCGAAGAAATTGCAGAGCCTAGTGAAGGAGAAAGCTCTGTTTA 418
Query 492 TATCGGAACTAGGGGCTCTTGCTGATGGTATTTCTCCTGGCGTTATCAGATCGTTGGTGG 551
|||||||||| |||| |||||||||| ||||||||| ||| ||||||||||||||||||
Sbjct 419 TATCGGAACTTGGGGATCTTGCTGATAATATTTCTCCAGGCCTTATCAGATCGTTGGTGG 478
Query 552 CTTTAGAGGACAAACCTTAAGTTAAGTAG 580
||||| |||||||||||| ||||||||||
Sbjct 479 CTTTAAAGGACAAACCTTTAGTTAAGTAG 507
> Ahg952423 jgi|Araly1|952423|scaffold_7000005.1
Length=343
Score = 438 bits (237), Expect = 2e-122
Identities = 271/288 (94%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 157 GATGGTGGAGAATGACAAGGAGAGGAATGCAAACCGAGAGGCTCTTACAGCACTAAGGAA 216
||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||
Sbjct 26 GATGGTGGAGAATGACAAGGAGAGGAATGTGAACCGAGAAGCTCTTACAGCACTTAGGAA 85
Query 217 GAGAGCTCGGACAACAAAGACTAGTGTTATGTCTCCATTTGATTCTATGATGAAGGATAT 276
||||||||||||||||||||||||| || | |||||||| ||||||||||| ||||||||
Sbjct 86 GAGAGCTCGGACAACAAAGACTAGTATTCTTTCTCCATTCGATTCTATGATAAAGGATAT 145
Query 277 CCATGGGAGCTCAACGAAACCTTTGGTCCAAGAAGTTTGCTCCACATGTGGATCCCATGA 336
||||||||||||||| |||||||||||||| |||||||| || || ||||||||||||||
Sbjct 146 CCATGGGAGCTCAACCAAACCTTTGGTCCAGGAAGTTTGTTCGACTTGTGGATCCCATGA 205
Query 337 CTCTAGTGAACCCACCTGGATGATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTT 396
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CTCTAGTGAACCGACGTGGATGATGCTCCCAGGAGCTGATCTTTTTGCTGCAATTCCGTT 265
Query 397 TCATGCTGTGCATACAATGCTAGAGAAAGATGAAGAGAAAATGGAGTT 444
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 266 TCATGCTGTGCATACAATGCTAGAGAAAAATGAAGAGAAAATGGAGTT 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25275493971
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5