BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15352.1

Length=544
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478971 jgi|Araly1|478971|fgenesh2_kg.3__1672__AT3G15352.1         708    0.0  
  Ahg923841 jgi|Araly1|923841|scaffold_105122.1                        159    1e-38


> Ahg478971 jgi|Araly1|478971|fgenesh2_kg.3__1672__AT3G15352.1
Length=507

 Score =  708 bits (383),  Expect = 0.0
 Identities = 439/465 (94%), Gaps = 7/465 (2%)
 Strand=Plus/Plus

Query  83   GTCGCCGACATTTTCACCGGTTCTCTGCTCTTTGATTCTTCCTCTGCAAATTCATTCAAA  142
            |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct  45   GTCGCCGACATTTTCACCGGTTCTCTGCTCTTTGATTCTTCCTCTGTAAAATCATTCAAA  104

Query  143  GGATGACTGATCAGCCAGCACAAAATGGATTGATTCCTCCACCCACTTCAGAGCCAAGCA  202
            |||||| | |||| ||||||||||| || ||||||||| |||||||||||||||||||||
Sbjct  105  GGATGAGTAATCAACCAGCACAAAACGGCTTGATTCCTTCACCCACTTCAGAGCCAAGCA  164

Query  203  AGGCTGCTGCCTCAGCAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATA  262
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  165  AGGCTGCTGCCTCGGCAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATA  224

Query  263  CCAAGAAGCTGAGAGATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGA  322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  225  CCAAGAAGCTGAGAGATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGA  284

Query  323  TCGAGGCTCATAAAATTTGTCTCCGAGCAGAAGGTTTCAACGTCTGATACttttttttct  382
            |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct  285  TCGAGGCTCATAAAATGTGTCTCCGAGCAGAAGGTTTCAACGTCTGATACTTTTTTTTTT  344

Query  383  t-t-ttCT-AATACGTAATTTGATGGATC-ATCAAAAGGAATGAGCAACAGAAGATTGTT  438
            | | |||| ||||||||||||||||| |  |||||||||||||||||||| | |||||||
Sbjct  345  TCTCTTCTTAATACGTAATTTGATGG-TGGATCAAAAGGAATGAGCAACATA-GATTGTT  402

Query  439  CATCACCCGGTATGGGTTTAGGGTATAAAAGCAAGAGATAATGTATGCATTTG-ATACAA  497
            |||||||||| ||||||||||||||||||| |||||||| ||||||||||||| ||||||
Sbjct  403  CATCACCCGGGATGGGTTTAGGGTATAAAAACAAGAGATTATGTATGCATTTGGATACAA  462

Query  498  AATCCCATTTTGATGCGATTGATAATAAAAAGAAACCATCTTTTC  542
            |||||||||||| || |||||| ||||||||||||||||||||||
Sbjct  463  AATCCCATTTTGTTGTGATTGAAAATAAAAAGAAACCATCTTTTC  507


> Ahg923841 jgi|Araly1|923841|scaffold_105122.1
Length=262

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 106/116 (91%), Gaps = 0/116 (0%)
 Strand=Plus/Plus

Query  218  CAGAGACGAAACCAAAGAAGAGGATATGTTGTGCTTGCCCTGATACCAAGAAGCTGAGAG  277
            |||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||
Sbjct  91   CAGAGACGAAACCAAAGAAGAGGATATGCTGTGCTTGTCCTGATACAAAGAAGCTAAGAG  150

Query  278  ATGAGTGCATTGTCGAGCATGGTGAATCGGCTTGCACTAAATGGATCGAGGCTCAT  333
            ||||||||||||| || || |||||||| |||||||| ||||||||||| ||||||
Sbjct  151  ATGAGTGCATTGTAGAACACGGTGAATCCGCTTGCACCAAATGGATCGAAGCTCAT  206



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19840906280


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5