BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15355.1
Length=2209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478973 jgi|Araly1|478973|fgenesh2_kg.3__1674__AT3G15355.1 2828 0.0
> Ahg478973 jgi|Araly1|478973|fgenesh2_kg.3__1674__AT3G15355.1
Length=2177
Score = 2828 bits (1531), Expect = 0.0
Identities = 2009/2223 (90%), Gaps = 99/2223 (4%)
Strand=Plus/Plus
Query 39 TTTCTTTGATCGATTTCTTCTTCTTCTTCTGGAAAATTATCTCGTTTTCCGTTTTTAGTT 98
||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 1 TTTCTTTGATCGATTTCTTCTTCTTCTTCAGGAAAATTCTCTCGTTTTCCGTTTTCAGTT 60
Query 99 CTTTGAGTTTGGGATCGTTCAATGGAGCCCAACGTAGTGGAGATCGCTACTCCTCCTGCC 158
||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| | |
Sbjct 61 CTTTGCGTTTGGGATCGTTCAATGGAGTCCAACGTAGTGGAGATCG---CTCCTCCGGTC 117
Query 159 GCTTCTTGCTCGAGAATTCGAACGCCAACAAAGGCTGAAACTCCAGAAGTGATTGATGTG 218
||||||||||| | | | | | ||||||||||||||||||||||||||||||||
Sbjct 118 GCTTCTTGCTC--G-A---G-A-G----CAAAGGCTGAAACTCCAGAAGTGATTGATGTG 165
Query 219 GAGGAATATGATTTGCAAAACGGTGGTGTTCCTAATGGCAACAATGTTGATTATAAGAAC 278
||||||||||| |||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 166 GAGGAATATGAAATGCAAAACGGTGGTGTTCTTAATGGCAACAATGTTGATAACAAGAAT 225
Query 279 AAAGGGAAGGCTATAGACTTTGATTCCATGTCTTACGGTGACTATGGTGAAGAAGATGAG 338
|||||||||||||| || ||||||||| | ||||||| || | | |||| ||||||
Sbjct 226 AAAGGGAAGGCTATTGATTTTGATTCCGTTTCTTACGATG---A--G-CAAGATGATGAG 279
Query 339 TATGCTGTGGGATCTCCTGGTGATGATTATGGTTATCCTGAATCATCTCCACTATCAAAT 398
| | ||| | | | ||||||||||||| ||| |||| |||||||||| ||||||||
Sbjct 280 T-T--TGT----T-T-CGGGTGATGATTATGATTACCCTGGATCATCTCCAATATCAAAT 330
Query 399 AGTTTGTTAGACCCAGAGT-CTTTGATCTATGAAGACGACGAAAACTATTCCGAACAATA 457
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 331 AGTTTGTTAGACCCAGA-TACTTTGATCTATGAAGACGACGAAAACTATTCCGAACAATA 389
Query 458 TGACTTTGAAATGGAGGCGGAGCCTGATAATTACTCCATGTATCAAGACCTTTTCGATGG 517
||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 390 TGACTTTGAAATGGAGGAGGAAACTGACAATTACTCCATGTATCAAGACCTTTTCGATGG 449
Query 518 TAAGGATATCCCAACTGGTGTGGAGGTTTCAATGGATTGGTTTCCAAATTCAGCTGACAA 577
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TAATGATATCCCAACTGGTGTGGAGGTTTCAATGGATTGGTTTCCAAATTCAGCTGACAA 509
Query 578 GGAATCAGCGAGT---AGTAGCAAATCGTCTCAT--GCT-A-A--TAACGGGAATAACAG 628
||||||||||||| || |||||||||||| || | | | | | || || ||||||
Sbjct 510 GGAATCAGCGAGTGGAAGCAGCAAATCGTCTAATAAG-TCAGATGTTACCGG--TAACAG 566
Query 629 TTCCAAGAAAGCAACAAAAGCAAGTGGAATCCATTCTCAATTTTC-TT--CAGATATGGA 685
|||||||||||||||||||| |||||||||||| ||||| ||||| || |||||||||
Sbjct 567 TTCCAAGAAAGCAACAAAAGGAAGTGGAATCCAATCTCAGTTTTCTTTCCCAGATATGGC 626
Query 686 AACCCCTGTAGCTCAACCATGGAATGCTTTACCGCACAAAGCTGAAGGAGTCATACCAAA 745
||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 627 AACCCCTGTTGCTCAACCATGGAATGCTTTACCGCACAAAGCTGGAGGAGTCATACCAAA 686
Query 746 CTCTGCTTATGCCTTGCCACAGAACAGCAAGGCTTTTCAACCACCTTACGCTGTCCACTA 805
||||||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 687 CTCTGCTTATGCCTTGCCACAGAACAGCAAGGCTTTTCAACCACCTTTTACTCTCGGTTC 746
Query 806 TTCAGCCCT-TAAAACTG-CTTTTTCCAATTATCTTCAGCCTCAGACTCCTGATACCGTA 863
|||| ||| ||||| | |||||||||| || ||||||||||||||||||||||||||
Sbjct 747 TTCA-ACCTCCAAAAC-GTATTTTTCCAATCATTTTCAGCCTCAGACTCCTGATACCGTA 804
Query 864 TTGGGGGAGGCTCCAGCTCCTGCTGCAGGTTCTTCTGGTTTA----TT---G--CCACCA 914
|||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 805 TTGGGGGAGGCTCCAGCTCCTGCTGCAGGTTCTTCTGGTTTATTGCTTCCGGTACCACCA 864
Query 915 AACACACCCGGTTTTAAAAGTAATGCTGCTCGGTTTAAAGAGG-AGCCGCCTATATTACC 973
|||||||| ||||||||| || ||| |||||||| || || || || | ||||||||||
Sbjct 865 AACACACCTGGTTTTAAAGGTTATGGTGCTCGGTATAGAGTGGAAG-AGGCTATATTACC 923
Query 974 TCCGGATGATTCCAGAGTTAAGAGAAATATGGAGGATTATCTTGGGCTTTATTTGTTTTT 1033
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 924 TCCGGATGCTTCCAGAGTTAAGAGAAATATGGAGGATTTTCTTGGGCTTTATTTGTTTTT 983
Query 1034 CAAAAGATTTGACATCGTCGAAGATTTTTCAGATCACCACTATGCTTCTAAGGGAACA-A 1092
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 984 CAAAAGATTTGACATCGTCGAAGATTTTTCAGATCACCACTATGCTTCTAAGGGAA-ATT 1042
Query 1093 CTTCAAAGCAGCATTCAAAGGATTGGGCGAAAAGGATCCAAGACGAGTGGAGAATTCTTG 1152
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1043 CTTCAAAGCAGCATTCAAAGGATTGGGCGAAAAGGATTCAAGACGAGTGGAAAATTCTTG 1102
Query 1153 AGAAAGATTTACCAGAGATGATATTTGTCAGAGCTTATGAATCTAGGATGGATCTTTTAA 1212
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1103 AGAAAGATTTACCAGATATGATATTTGTCAGAGCTTATGAATCTAGGATGGATCTCTTAA 1162
Query 1213 GGGCTGTAATTATCGGAGCCCAAGGAACTCCCTACCATGATGGTCTCTTCTTTTTTGATA 1272
||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 1163 GGGCTGTAATTATCGGAGCGCAAGGAACTCCATACCATGATGGTCTGTTCTTTTTTGATA 1222
Query 1273 TCTTCTTCCCGGATACATACCCTTCTACGCCACCGATTGTTCATTACCATTCTGGTGGGC 1332
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1223 TCTTCTTCCCGGATACATACCCTTCTGTGCCACCGACTGTTCATTACCATTCTGGTGGGC 1282
Query 1333 TAAGAATCAACCCAAATCTGTACAATTGTGGGAAAGTGTGTCTGAGTCTTCTCGGCACTT 1392
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1283 TGAGAATCAACCCGAATCTGTACAATTGTGGGAAAGTCTGTCTGAGTCTTCTCGGCACTT 1342
Query 1393 GGAGTGGTAACCAGAGGGAGAAATGGATCCCCAACACTTCGACGATGCTACAAGTTCTTG 1452
||||||||| |||||||||||||||||||||||||||||| || ||| | || |||||||
Sbjct 1343 GGAGTGGTAGCCAGAGGGAGAAATGGATCCCCAACACTTCCACAATGTTGCAGGTTCTTG 1402
Query 1453 TCTCGATCCAAGGTCTAATCTTAAATCAAAAACCTTACTTCAACGAGCCCGGCTACGAGA 1512
|||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1403 TCTCGATCCAAGGTCTCATCTTAAACCAAAAACCTTACTTCAACGAGCCTGGCTACGAGA 1462
Query 1513 GGTCAGCAGGTTCTGCACATGGTGAGAGTACCTCTAAAGCTTACAGCGAAAACACATTCA 1572
| ||||| |||||||||||||||||||||| |||||| |||||||||||||||||| ||
Sbjct 1463 GTTCAGCGGGTTCTGCACATGGTGAGAGTAGCTCTAAGGCTTACAGCGAAAACACACTCC 1522
Query 1573 TACTGTCTTTAAAGACTATGGTTTACACCATGAGGAGACCACCCAAGTATTTTGAAGACT 1632
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1523 TACTGTCTTTAAAGACTATGGTTTACACCATGAGGAGACCACCTAAGTATTTTGAAGACT 1582
Query 1633 TTGCGTATGGACATTTCTTCAGCTGTGCTCACGACGTGTTGAAGGCGTGTAATGCTTACA 1692
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1583 TTGCATATGGACATTTCTTCAGCTGTGCTCACGACGTGTTGAAGGCGTGTAATGCTTATA 1642
Query 1693 GAAACGGAGCTACACCGGGA-TATCTGGTGAAGGGGGCTCCAGATGTGGAAGAGAATAGC 1751
||||||||| || ||||||| | ||||||||||||||||| |||||||||||||||||||
Sbjct 1643 GAAACGGAGGTATACCGGGACT-TCTGGTGAAGGGGGCTCAAGATGTGGAAGAGAATAGC 1701
Query 1752 GCGGGCATG-AGCTCTCTGAAGTTTAGGACAGATGTGGCTACCTTTGTGGAGACAGTGCT 1810
||| || | |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 GCGAACA-GTAGCTCTAAGAAGTTTAGGACAGATGTGGCTACCTTTGTGGAGACAGTGCT 1760
Query 1811 GTTGAAAGAGTTTATTCTTCTAGGTGTCCTTGGTCTCGAACCGGAAGAAGAAGAAAAAAC 1870
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 1761 GTTGAAAGAGTTTATTCTTCTAGGTGTCCTTGGTCTCGAACCGGAAGGAGAAGACAAAGC 1820
Query 1871 ACCTGAGACTAT-AATCGTTGCAGAGAGTAGC-A-AATGTACCAGATCAAG-GTCCAAGA 1926
||||||||||| || |||||||||||||||| | ||| ||||||||||| | ||||||
Sbjct 1821 ACCTGAGACTAACAA-CGTTGCAGAGAGTAGCCACAAT--ACCAGATCAAGCG-CCAAGA 1876
Query 1927 GAGACAGAGTTTCTTCTAGTTGATCTCCATTGCTCCCttttttttGTCC-TTAATTTTTC 1985
|||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||||||
Sbjct 1877 GAGACAGAGTTTCTTCTAGTTGATCTCCATGGCTCC-TTTTTTTT-TCCCTTAATTTTTC 1934
Query 1986 TTAATTTCTGAAGAAACC----GGTGACTTAATTAGTTTCTCCCTT-CTTACAATCATGG 2040
|||||||||||||||||| ||||||||||||||||||||| || |||||||||||||
Sbjct 1935 TTAATTTCTGAAGAAACCAACCGGTGACTTAATTAGTTTCTCCTTTTCTTACAATCATGG 1994
Query 2041 ATCCTCtttttttCTCTTAACTATGACATAAATCTTAAAAGACTATTGAGAACTGAGAAG 2100
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 ATCCTCTTTTTTCCTCTTAACTATGACATAAATCTTAAAAGACTATTGAGAACTGAGAAG 2054
Query 2101 TCACTCTCATATGTACAGTTCCCTTTATCAGTCAGATTTATTAT-A-----GCCTCAATT 2154
|||||||||| ||||||||| |||||| |||||||||||||||| | |||||||||
Sbjct 2055 TCACTCTCATTTGTACAGTTGCCTTTACCAGTCAGATTTATTATTATTATAGCCTCAATT 2114
Query 2155 TTCTGAGCTACC------A--GAGAA-GTGAGTAAAAGTCAACGATACAAGGTTTGGATT 2205
|||||||||||| | ||||| ||||||| |||||||||||||||||||| ||||
Sbjct 2115 TTCTGAGCTACCTTTTTCACAGAGAAAGTGAGTATAAGTCAACGATACAAGGTTTAGATT 2174
Query 2206 TTG 2208
|||
Sbjct 2175 TTG 2177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83151004835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5