BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15356.1
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478968 jgi|Araly1|478968|fgenesh2_kg.3__1669__AT3G15356.1 1581 0.0
Ahg479116 jgi|Araly1|479116|fgenesh2_kg.3__1817__AT3G16530.1 1057 0.0
Ahg474427 jgi|Araly1|474427|fgenesh2_kg.1__4381__AT1G53080.1 91.6 1e-17
> Ahg478968 jgi|Araly1|478968|fgenesh2_kg.3__1669__AT3G15356.1
Length=1064
Score = 1581 bits (856), Expect = 0.0
Identities = 1003/1071 (94%), Gaps = 22/1071 (2%)
Strand=Plus/Plus
Query 1 ATCATCAATCTTCTCCACACTTGAATCACAAACAACAACAAAAGAAACACAATGCAGATT 60
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATCACCAATCTTCTCCACACTTCAATAACAAACAACAACAAAAGAAACACAATGCAGATT 60
Query 61 CACAAACTCTGTTTTCTTGCTCTGTTCTTAGCTAATGCAGCTTTTGCCGTCAAATTCAAC 120
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 61 CACAAACTCTGTTTTCTTGCTCTGTTCTTAGCTAACGCAGTTTTTGCCGTCAAATTTAAC 120
Query 121 TTCGATTCCTTCGATGGCAGCAACTTGTTATTCCTTGGAGACGCTGAGCTTGGTCCTTCC 180
||| |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 TTCAATTCTTTCGATGGCAACAACTTGTTATTCCTAGGAGACGCTGAGCTTGGTCCTTCC 180
Query 181 TCTGATGGCGTAAG-CCGATCCGGAGCTCTT-TCCATGACCCGAGACGAAACCCCATTCT 238
||||||||||| || |||||||||||| || |||||||||||||||| |||||||||||
Sbjct 181 TCTGATGGCGT-AGAACGATCCGGAGCT-TTATCCATGACCCGAGACGGAACCCCATTCT 238
Query 239 CTCATGGTCAGGGTCTTTACATCAATCCAATCCAATTCAAATCTTCAAACACTTCTTCTC 298
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 239 CTCACGGTCAAGGTCTTTACATCAATCCAATCCAATTCAAATCTTCAAACACTTCTACTC 298
Query 299 CTTTTGATTTTAAAACTTCTTTCACTTTCTCCATCACTCCTCGCACCAAACCTAATTCTG 358
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CTTTTTCGTTTAAAACTTCTTTCACTTTCTCCATCACTCCTCGCACCAAACCTAATTCTG 358
Query 359 GTCAAGGCCTTGCCTTCGTCATTGTCCCAGCCGCTGATAACTCCGGCGCTTCCGGCGGAG 418
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 359 GTCAAGGCCTTGCCTTCATCATTGTCCCAGCCGCTGATAACTCCGGCGCTTCAGGCGGCG 418
Query 419 GATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGTCAGAAAACAACCTCATATTTA 478
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 419 GATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGCCAGAAAACAACCTCATATTTA 478
Query 479 TCGAATTCGACACGTTT-AAGAACAATGAGTCTAATGACATTAGTGGTAACCATGTCGGA 537
||||||| ||||| ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct 479 TCGAATTGGACACTTTTCAA-AACAAAGAGTCTAATGACATTAGTGGTAACCATGTCGGA 537
Query 538 ATCAACATCAACTCGATGACTTCTCTTGTCGCTGAGAAAGCTGGTTATTGGGTTCAGACA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 ATCAACATCAACTCGATGACTTCTCTTGTCGCTGAGAAAGCTGGTTATTGGGTTCAGACA 597
Query 598 TTAGTCGGAAAAAGAAAAGTTTGGTCGTTTAAAGATGTGAATCTTAGCAGTGGAGAGAGG 657
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTAGTCGGGAAAAGGAAAGTTTGGTCGTTTAAAGATGTGAATCTTAGCAGTGGAGAGAGG 657
Query 658 TTCAAGGCTTGGATCGAGTTCAGAAGCAAAGACTCTAGGAATACCATTACCATCGCCCCT 717
||||||| ||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 658 TTCAAGGTTTGGATCGAGTTCAGAAGCAAAGACTCTAGGAATACCATAACGATCGCGCCT 717
Query 718 GAAAACGTTAAGAAACCGAAGAGGCCTTTGATCCAAGGTTCGAGAGTACTCAATGATGTT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GAAAACGTTAAGAAACCGAAGAGGCCTTTGATCCAAGGTTCGAGAGTACTCAATGATGTT 777
Query 778 CTTCTTCAAAACATGTACGCTGGTTTTGCTGGTTCCATGGGACGTGCCGGTGAGCGTCAC 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTTCTTCAAAACATGTACGCTGGTTTTGCTGGTTCCATGGGACGTGCCGGTGAGCGTCAC 837
Query 838 GATGTTTGGAGCTGGTCGTTTGAAAACTAA-GTAAACCGGTTCGGTTCGGTTCAGTTTGG 896
|| |||||||||||||||| ||||||||| | ||||||||| ||||||||| || ||
Sbjct 838 GACATTTGGAGCTGGTCGTTCGAAAACTAACG-AAACCGGTTTGGTTCGGTT---TT-GG 892
Query 897 CTAGGTATCGTTTGCTTTGTTTTTGTAATT--GT--TG-TAGAGTGAATAATTAAGGTAT 951
|||||||||||||||||||||||||||||| || | |||||||||||||||| || |
Sbjct 893 CTAGGTATCGTTTGCTTTGTTTTTGTAATTTTGTACTACTAGAGTGAATAATTAACGTTT 952
Query 952 GAA-TAAAATAAGCCGACC-TGTG-G-CTTACTCTGCATTGTATTTTCATATTTGTGTAA 1007
|| |||||||||| | | |||| | |||||||||||||| |||||||||||||||||
Sbjct 953 TAAATAAAATAAGCTAAACATGTGTGGCTTACTCTGCATTGCATTTTCATATTTGTGTAT 1012
Query 1008 TCAGTCTGAATAATTCAGAGGTTTT-CAATAAAATAAACTTCCTTTCCAAA 1057
|||||||||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 1013 TCAGTCTGAATAATTCAGAGATTTTTCAATAAAATAAACTTTCTTTCCAAA 1063
> Ahg479116 jgi|Araly1|479116|fgenesh2_kg.3__1817__AT3G16530.1
Length=1007
Score = 1057 bits (572), Expect = 0.0
Identities = 744/826 (90%), Gaps = 16/826 (2%)
Strand=Plus/Plus
Query 47 ACACAATGCAGATTCACAAACTCTGTTTTCTTGCTCTGTTCTTAGCTAATGCAGCTTTTG 106
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 57 ACACAATGCAGATTCACAAACTCTGTTTTCTTGTTCTGTTCTTAGCTAACGCAGCTTTTG 116
Query 107 CCGTCAAATTCAACTTC-GATTCCTTCGATGGCAGCAACTTGTTATTCCTTGGAGACGCT 165
||||||||||||||||| || ||||||||||||| ||||||| ||||||| ||||||||
Sbjct 117 CCGTCAAATTCAACTTCAGA-TCCTTCGATGGCAACAACTTGCTATTCCTAGGAGACGCA 175
Query 166 GAGCTTGGTCCTTCCTCTGATGGCGTAAGCCGATCCGGAGCTCTT-TCCATGACCCGAGA 224
||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||
Sbjct 176 GAGCTTGGTCCTTCCTCTGATGGTGTAAGCCGATCCGGAGCT-TTATCCATGACCCGAGA 234
Query 225 CGA-AACCCCATTCTCTCATGGTCAGGGTCTTTACATCAATCCAATCCAATTCAAATCTT 283
||| || |||||||||||| ||||| |||||||||||||||| ||||| ||||||| |||
Sbjct 235 CGAGAA-CCCATTCTCTCACGGTCAAGGTCTTTACATCAATCAAATCCCATTCAAACCTT 293
Query 284 CAAACACTTCTTCTCC-TTTTGATTTTAAAACTTCTTTCACTTTCTCCATCACTCCTCGC 342
|||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 294 CAAACACTTCTTCTCCTTTTTCA-TTTGAAACTTCTTTCACTTTCTCCATCACTCCTCGC 352
Query 343 ACCAAACCTAATTCTGGTCAAGGCCTTGCCTTCGTCATTGTCCCAGCCGCTGATAACTCC 402
||||||||||| || |||||||| || |||||| |||| ||| | | ||||||||||||
Sbjct 353 ACCAAACCTAACTCCGGTCAAGGTCTCGCCTTCATCATAGTCGCGGAAGCTGATAACTCC 412
Query 403 GGCGCTTCCGGCGGAGGATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGTCAGAA 462
|| ||||| || || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 413 GGTGCTTCGGGTGGCGGATATCTCGGAATCCTCAACAAAACCAACGATGGAAAGCCAGAG 472
Query 463 AACAACCTCATATTTATCGAATTCGACACGTTT-AAGAACAATGAG--TCTAATGACATT 519
||| || || | |||||||||||| || ||| ||||||| ||| ||| | ||||||
Sbjct 473 AACCACATCTTGGCTATCGAATTCGATAC-TTTCCAGAACAAAGAGTTTCT-A-GACATT 529
Query 520 AGTGGTAACCATGTCGGAATCAACATCAACTCGATGACTTCTCTTGTCGCTGAGAAAGCT 579
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 530 AGTGGTAACCATGTCGGAGTTAACATCAACTCGATGACTTCTCTTGTCGCTGAGAAAGCT 589
Query 580 GGTTATTGGGTTCAGACATTAGTCGGAAAAAGAAAAGTTTGGTCGTTTAAAGATGTGAAT 639
||||| |||||||||||| |||||| ||||| |||||||||||||||||||||||||||
Sbjct 590 GGTTACTGGGTTCAGACAAGAGTCGGTAAAAGGAAAGTTTGGTCGTTTAAAGATGTGAAT 649
Query 640 CTTAGCAGTGGAGAGAGGTTCAAGGCTTGGATCGAGTTCAGAAGCAAAGACTCTAGGAAT 699
|||||||||||||||||||||||||||||| | |||||||||||||||||||| | || |
Sbjct 650 CTTAGCAGTGGAGAGAGGTTCAAGGCTTGGGTTGAGTTCAGAAGCAAAGACTCAACGATT 709
Query 700 ACCATTAC-CATCGCCCCTGAAAACGTTAAGAAACCGAAGAGGCCTTTGATCCAAGGTTC 758
|| |||| | |||| |||||||||||||||||||| |||||| |||||||| ||| | |
Sbjct 710 ACGGTTACGC-TCGCGCCTGAAAACGTTAAGAAACCTAAGAGGGCTTTGATCGAAGCTCC 768
Query 759 GAGAGTACTCAATGATGTTCTTCTTCAAAACATGTACGCTGGTTTTGCTGGTTCCATGGG 818
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 CAGAGTGCTCAATGAAGTTCTTCTTCAAAACATGTACGCTGGTTTTGCTGGTTCCATGGG 828
Query 819 ACGTGCCGGTGAGCGTCACGATGTTTGGAGCTGGTCGTTTGAAAAC 864
|||||| | |||||||||||| |||||||||||||||||||||||
Sbjct 829 ACGTGCAGTTGAGCGTCACGACATTTGGAGCTGGTCGTTTGAAAAC 874
> Ahg474427 jgi|Araly1|474427|fgenesh2_kg.1__4381__AT1G53080.1
Length=834
Score = 91.6 bits (49), Expect = 1e-17
Identities = 255/351 (73%), Gaps = 28/351 (8%)
Strand=Plus/Plus
Query 513 TGACATTAGTGGTAACCATGTCGGAATCAACATCAACTC-GATGACTTCTCTTGTCGCTG 571
||| |||| || ||| ||||| || ||||| || ||||| | | || || || |||
Sbjct 483 TGATATTAATGATAATCATGTTGGTATCAATATTAACTCTG-TTACCTCAAAAGTTTCTG 541
Query 572 AGAAAGCTGGTTATTGGGTTCAGACATTAG-TCGGAA-AAAGAA--AAGTTTGGTCGTTT 627
|||||||||||||||||||||||||| | | ||| ||| || || | ||| ||||
Sbjct 542 AGAAAGCTGGTTATTGGGTTCAGACAAGAACT-GGAGGAAACAATCAA-T--GGTTGTTT 597
Query 628 AAAGATGTGAATCTTAGCAGTGGAGAGAGGTTCAAGGCTTGGATCGAGTTCA-GAAGCAA 686
|| || ||||| ||||| || ||||| | | ||| ||||||||||||| || ||| ||
Sbjct 598 AAGGAAGTGAAGCTTAGTAGCGGAGATAACTACAAAGCTTGGATCGAGTACAAGAA-CA- 655
Query 687 AGACTCTAGGAATACCATTACCATCGCCCCTGAAAACGTTAA-GAAACCGAAGAGGCCTT 745
| | || || || | |||| |||| | |||| ||||||||||||||| |
Sbjct 656 -G--TAAAGTCATTGT-TTGGC-TCGCACCTGCCCAT-TTAAAGAAACCGAAGAGGCCAT 709
Query 746 TGATCCAAGGTTCGAGA-G-TACTCAATGATGTTCTTCTTCAAAACA-TGTACGCTGGTT 802
||||| || | || | | ||| ||| || ||||| ||| || |||| ||||||
Sbjct 710 TGATCGAAACA-CAAGTTGAT-CTCTCTGAGGTGGTTCTTGAAA-CAATGTATACTGGTT 766
Query 803 TTGCTGGTTCCATGGGACGTGCCGGT-GAGCGTCACGATGTTTGGAGCTGG 852
|||||||||| ||||| |||| | | ||||||||||| |||||||||||
Sbjct 767 TTGCTGGTTCGATGGGTCGTGGCA-TCGAGCGTCACGACATTTGGAGCTGG 816
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5