BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15357.1

Length=595
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478974 jgi|Araly1|478974|fgenesh2_kg.3__1675__AT3G15357.1         619    6e-177


> Ahg478974 jgi|Araly1|478974|fgenesh2_kg.3__1675__AT3G15357.1
Length=519

 Score =  619 bits (335),  Expect = 6e-177
 Identities = 460/516 (89%), Gaps = 26/516 (5%)
 Strand=Plus/Plus

Query  36   ACTGCGATCAAAAATGGCTTCAGCTTCATCATCGGCGGCGAGATCACTCATCCGCGACGG  95
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  15   ACT-CGATCAAAAATGGCTTCAGCTTCATCATCGGCGGCGAGATCACTCATCCGTGACGG  73

Query  96   AAAATC-GTTGACGAATCTATTCCTCCGTGGACGTAAGATCAATCTCACCGAGACAGTAC  154
            |||||| || | |||||||| ||||||||||||||| || |||||| || ||||| || |
Sbjct  74   AAAATCAGTGG-CGAATCTAATCCTCCGTGGACGTACGACCAATCTTACTGAGACTGTGC  132

Query  155  AGAACAATGGACCGGCCATTCGATCTCTGCTTTGTTTTAACCAGATG-C-C-GGCGGCTA  211
            |||||||| ||||||||||||||||||||||||| |||||||||| | | | ||||||||
Sbjct  133  AGAACAATAGACCGGCCATTCGATCTCTGCTTTGGTTTAACCAGACGGCGCCGGCGGCTA  192

Query  212  GCCAATACCCTGTTTACTCTGAAACTTTTCCGGTTATGAAATCCGGTTTACGTGTCGGCT  271
             |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct  193  TCCAATACCCTGTTTTCTCTGAAACTTTTCCGGTTATGCAATCCGGTTTACGTGTCGGCT  252

Query  272  TCGTTCAGAAGGAGGCCGTTTC--GGAGAGAGTAGGGAAAATGGAGGCGGCTCATGGAAA  329
            |||||||||||||||  |||||  |||||| |||||||||||||||||||||||||||||
Sbjct  253  TCGTTCAGAAGGAGG--GTTTCTCGGAGAGGGTAGGGAAAATGGAGGCGGCTCATGGAAA  310

Query  330  GCGAGTGGTGGACAACAAAGATGCTGATTCAGAGGAGGACACGGATTttgatgaagacga  389
            |||||||||||||||| | || ||||||||||||||||| || ||||||||||| || ||
Sbjct  311  GCGAGTGGTGGACAACGACGAAGCTGATTCAGAGGAGGAGACAGATTTTGATGAGGAAGA  370

Query  390  gattgatgacgttgacttt-gaagacgatgaagattctgacga-a--ga---tgatgaGG  442
            |||||||||||| || | | || ||||||||||||| ||| || |  ||   ||||||||
Sbjct  371  GATTGATGACGTGGA-TATCGACGACGATGAAGATTTTGATGATATTGACGATGATGAGG  429

Query  443  AAGAGGAGGATGACAAGTACACAAGGAAGAAGAAGTAACTCTTC-A-TTCTTCACAAAAT  500
            |||||||||||||||||||| ||||||||||||||||||||||  | |||||||||||||
Sbjct  430  AAGAGGAGGATGACAAGTACTCAAGGAAGAAGAAGTAACTCTTTTAATTCTTCACAAAAT  489

Query  501  GCTTTCTGTTTTTTGTTTGCTTGAGATTAATGGCTT  536
            |||| |||||||| |    |||||||||||||||||
Sbjct  490  GCTT-CTGTTTTT-G----CTTGAGATTAATGGCTT  519



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21786841319


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5