BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15357.1 Length=595 Score E Sequences producing significant alignments: (Bits) Value Ahg478974 jgi|Araly1|478974|fgenesh2_kg.3__1675__AT3G15357.1 619 6e-177 > Ahg478974 jgi|Araly1|478974|fgenesh2_kg.3__1675__AT3G15357.1 Length=519 Score = 619 bits (335), Expect = 6e-177 Identities = 460/516 (89%), Gaps = 26/516 (5%) Strand=Plus/Plus Query 36 ACTGCGATCAAAAATGGCTTCAGCTTCATCATCGGCGGCGAGATCACTCATCCGCGACGG 95 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 15 ACT-CGATCAAAAATGGCTTCAGCTTCATCATCGGCGGCGAGATCACTCATCCGTGACGG 73 Query 96 AAAATC-GTTGACGAATCTATTCCTCCGTGGACGTAAGATCAATCTCACCGAGACAGTAC 154 |||||| || | |||||||| ||||||||||||||| || |||||| || ||||| || | Sbjct 74 AAAATCAGTGG-CGAATCTAATCCTCCGTGGACGTACGACCAATCTTACTGAGACTGTGC 132 Query 155 AGAACAATGGACCGGCCATTCGATCTCTGCTTTGTTTTAACCAGATG-C-C-GGCGGCTA 211 |||||||| ||||||||||||||||||||||||| |||||||||| | | | |||||||| Sbjct 133 AGAACAATAGACCGGCCATTCGATCTCTGCTTTGGTTTAACCAGACGGCGCCGGCGGCTA 192 Query 212 GCCAATACCCTGTTTACTCTGAAACTTTTCCGGTTATGAAATCCGGTTTACGTGTCGGCT 271 |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 193 TCCAATACCCTGTTTTCTCTGAAACTTTTCCGGTTATGCAATCCGGTTTACGTGTCGGCT 252 Query 272 TCGTTCAGAAGGAGGCCGTTTC--GGAGAGAGTAGGGAAAATGGAGGCGGCTCATGGAAA 329 ||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||| Sbjct 253 TCGTTCAGAAGGAGG--GTTTCTCGGAGAGGGTAGGGAAAATGGAGGCGGCTCATGGAAA 310 Query 330 GCGAGTGGTGGACAACAAAGATGCTGATTCAGAGGAGGACACGGATTttgatgaagacga 389 |||||||||||||||| | || ||||||||||||||||| || ||||||||||| || || Sbjct 311 GCGAGTGGTGGACAACGACGAAGCTGATTCAGAGGAGGAGACAGATTTTGATGAGGAAGA 370 Query 390 gattgatgacgttgacttt-gaagacgatgaagattctgacga-a--ga---tgatgaGG 442 |||||||||||| || | | || ||||||||||||| ||| || | || |||||||| Sbjct 371 GATTGATGACGTGGA-TATCGACGACGATGAAGATTTTGATGATATTGACGATGATGAGG 429 Query 443 AAGAGGAGGATGACAAGTACACAAGGAAGAAGAAGTAACTCTTC-A-TTCTTCACAAAAT 500 |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||| Sbjct 430 AAGAGGAGGATGACAAGTACTCAAGGAAGAAGAAGTAACTCTTTTAATTCTTCACAAAAT 489 Query 501 GCTTTCTGTTTTTTGTTTGCTTGAGATTAATGGCTT 536 |||| |||||||| | ||||||||||||||||| Sbjct 490 GCTT-CTGTTTTT-G----CTTGAGATTAATGGCTT 519 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21786841319 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5