BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15358.1
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929330 jgi|Araly1|929330|scaffold_301787.1 797 0.0
Ahg923842 jgi|Araly1|923842|scaffold_105123.1 460 5e-129
> Ahg929330 jgi|Araly1|929330|scaffold_301787.1
Length=477
Score = 797 bits (431), Expect = 0.0
Identities = 462/476 (97%), Gaps = 5/476 (1%)
Strand=Plus/Plus
Query 75 ATTGGAATCAACAAAGGTCCGATGAATTCATATCTCTTCCGCGTAATCTGTATACTCCAT 134
|||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||
Sbjct 1 ATTGGAATCAAC-AAGGTCCGATGAATTCACATCTCTTCCGTGTAATCTGTATGCTCCAT 59
Query 135 TCGATTATCGCACTCACAAGTGGAACTCTGATGATGTTCTACACAGAGAAAGCTTCGATC 194
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 60 TCGATTATCGCACTTACAAGTGGAACCCTGATGATGTTCTACACAGAGAAAGCTTCGATC 119
Query 195 TTTGGACATGGTAGTGATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGCAG 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTTGGACATGGTAGTGATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGCAG 179
Query 255 CTTATTCAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTGCTT 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 CTTATTCAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTACTT 239
Query 315 TTCATGGTGTCGTTTGTGAAAGACAGAGAGTTTCATAGCTTCTTTGCAGCTGGTTCTGTG 374
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 240 TTCATGGTGTCGTTTGTGAAAGACAGAGAGTTTCATAGCTTCTTTGCCGCTGGTTCTGTG 299
Query 375 ATTCTCTATATGGTTATGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTT 434
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATTCTCTATATGCTTATGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTT 359
Query 435 GCTTTTGAATGTCCCAAGCAAGCCCTTGGAGATATTGCTTTAGCTGTCTCATGGGTTTTC 494
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GCTTTTGAATGTCCCAAGCAAGCCCTTGGAGACATTGCTTTAGCTGTCTCATGGGTTTTC 419
Query 495 TTCCTCGTTTATACATGGAGAGAGAAGTATGATTGAT-G-t-tttt-ttttttttt 546
||||||||||||||||||||||||||||||||||||| | | |||| |||||||||
Sbjct 420 TTCCTCGTTTATACATGGAGAGAGAAGTATGATTGATTGATGTTTTGTTTTTTTTT 475
> Ahg923842 jgi|Araly1|923842|scaffold_105123.1
Length=494
Score = 460 bits (249), Expect = 5e-129
Identities = 386/452 (85%), Gaps = 10/452 (2%)
Strand=Plus/Plus
Query 94 CGATGAATTCATATCTC-TTCCGCGTAATCTGTATACTCCATTCGATTATCGCACTCACA 152
|||||||| ||| | || || || ||||||||||||||||||||||| ||||| || ||
Sbjct 38 CGATGAATCCATCT-TCGTTTCGAGTAATCTGTATACTCCATTCGATAATCGCGCTTACT 96
Query 153 AGTGGAACTCTGATGATGTTCTACACAGAGAAAGCTTCGATCTTTGGA-CATGGTAGTGA 211
|||||||| || |||||||||||||||||||||||||| ||||||||| || || |||||
Sbjct 97 AGTGGAACCCTAATGATGTTCTACACAGAGAAAGCTTCAATCTTTGGACCA-GGAAGTGA 155
Query 212 TATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGC-AGCTTATTCAGATTTCTC 270
|| |||| ||| || ||||||||||| || || || || | | || || ||||||||||
Sbjct 156 GATTGCAAGCAAACTAAAAGGATCAACGCCACATGATGAACTA-CTCATACAGATTTCTC 214
Query 271 AGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTGCTTTTCATGGTGTCGTTTG 330
|||||||||||||||||||||||||||| || || ||||| || ||||||||||| ||||
Sbjct 215 AGTCATTCTCTGGTTTGCTTCTCTTTGCAATTGGTTTGGTACTGTTCATGGTGTCCTTTG 274
Query 331 TGAAAGACAGAGAGTTTCATAGCTTCTTTGC-AGCTGGTTCTGTGATTCTCTATATGGTT 389
|||||||||||||||||||||||||||| || | ||||||| |||||||| ||| || ||
Sbjct 275 TGAAAGACAGAGAGTTTCATAGCTTCTTCGCTA-CTGGTTCGGTGATTCTTTATGTG-TT 332
Query 390 A-TGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTTGCTTTTGAATGTCC 448
| ||||| | ||||| ||| |||| |||||||| |||||||||||||||| |||||| ||
Sbjct 333 AATGGCTATGTGGAGGGTTTTGTTCGAGTGGAAAATTGAAGATCTTGCTTATGAATGGCC 392
Query 449 CAAGCAAGCCCTTGGAGATATTGCTTTAGCTGTCTCATGGGTTTTCTTCCTCGTTTATAC 508
|| ||||| |||||||| |||||||| ||| | || ||||||||||| || |||||| |
Sbjct 393 TAAACAAGCTCTTGGAGACATTGCTTTGGCTATTTCTTGGGTTTTCTTTCTTGTTTATTC 452
Query 509 ATGGAGAGAGAAGTATGATTGATGtttttttt 540
||||||||||||||||||||||| | |||||
Sbjct 453 TTGGAGAGAGAAGTATGATTGATGATGTTTTT 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26838533568
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5