BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15358.1 Length=729 Score E Sequences producing significant alignments: (Bits) Value Ahg929330 jgi|Araly1|929330|scaffold_301787.1 797 0.0 Ahg923842 jgi|Araly1|923842|scaffold_105123.1 460 5e-129 > Ahg929330 jgi|Araly1|929330|scaffold_301787.1 Length=477 Score = 797 bits (431), Expect = 0.0 Identities = 462/476 (97%), Gaps = 5/476 (1%) Strand=Plus/Plus Query 75 ATTGGAATCAACAAAGGTCCGATGAATTCATATCTCTTCCGCGTAATCTGTATACTCCAT 134 |||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |||||| Sbjct 1 ATTGGAATCAAC-AAGGTCCGATGAATTCACATCTCTTCCGTGTAATCTGTATGCTCCAT 59 Query 135 TCGATTATCGCACTCACAAGTGGAACTCTGATGATGTTCTACACAGAGAAAGCTTCGATC 194 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 60 TCGATTATCGCACTTACAAGTGGAACCCTGATGATGTTCTACACAGAGAAAGCTTCGATC 119 Query 195 TTTGGACATGGTAGTGATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGCAG 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTTGGACATGGTAGTGATATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGCAG 179 Query 255 CTTATTCAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTGCTT 314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 180 CTTATTCAGATTTCTCAGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTACTT 239 Query 315 TTCATGGTGTCGTTTGTGAAAGACAGAGAGTTTCATAGCTTCTTTGCAGCTGGTTCTGTG 374 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 240 TTCATGGTGTCGTTTGTGAAAGACAGAGAGTTTCATAGCTTCTTTGCCGCTGGTTCTGTG 299 Query 375 ATTCTCTATATGGTTATGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTT 434 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 ATTCTCTATATGCTTATGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTT 359 Query 435 GCTTTTGAATGTCCCAAGCAAGCCCTTGGAGATATTGCTTTAGCTGTCTCATGGGTTTTC 494 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 360 GCTTTTGAATGTCCCAAGCAAGCCCTTGGAGACATTGCTTTAGCTGTCTCATGGGTTTTC 419 Query 495 TTCCTCGTTTATACATGGAGAGAGAAGTATGATTGAT-G-t-tttt-ttttttttt 546 ||||||||||||||||||||||||||||||||||||| | | |||| ||||||||| Sbjct 420 TTCCTCGTTTATACATGGAGAGAGAAGTATGATTGATTGATGTTTTGTTTTTTTTT 475 > Ahg923842 jgi|Araly1|923842|scaffold_105123.1 Length=494 Score = 460 bits (249), Expect = 5e-129 Identities = 386/452 (85%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 94 CGATGAATTCATATCTC-TTCCGCGTAATCTGTATACTCCATTCGATTATCGCACTCACA 152 |||||||| ||| | || || || ||||||||||||||||||||||| ||||| || || Sbjct 38 CGATGAATCCATCT-TCGTTTCGAGTAATCTGTATACTCCATTCGATAATCGCGCTTACT 96 Query 153 AGTGGAACTCTGATGATGTTCTACACAGAGAAAGCTTCGATCTTTGGA-CATGGTAGTGA 211 |||||||| || |||||||||||||||||||||||||| ||||||||| || || ||||| Sbjct 97 AGTGGAACCCTAATGATGTTCTACACAGAGAAAGCTTCAATCTTTGGACCA-GGAAGTGA 155 Query 212 TATAGCAAACAAGCTCAAAGGATCAACACCTCACGACGAGC-AGCTTATTCAGATTTCTC 270 || |||| ||| || ||||||||||| || || || || | | || || |||||||||| Sbjct 156 GATTGCAAGCAAACTAAAAGGATCAACGCCACATGATGAACTA-CTCATACAGATTTCTC 214 Query 271 AGTCATTCTCTGGTTTGCTTCTCTTTGCTATCGGATTGGTGCTTTTCATGGTGTCGTTTG 330 |||||||||||||||||||||||||||| || || ||||| || ||||||||||| |||| Sbjct 215 AGTCATTCTCTGGTTTGCTTCTCTTTGCAATTGGTTTGGTACTGTTCATGGTGTCCTTTG 274 Query 331 TGAAAGACAGAGAGTTTCATAGCTTCTTTGC-AGCTGGTTCTGTGATTCTCTATATGGTT 389 |||||||||||||||||||||||||||| || | ||||||| |||||||| ||| || || Sbjct 275 TGAAAGACAGAGAGTTTCATAGCTTCTTCGCTA-CTGGTTCGGTGATTCTTTATGTG-TT 332 Query 390 A-TGGCTTTATGGAGAGTTATGTTTGAGTGGAAGATTGAAGATCTTGCTTTTGAATGTCC 448 | ||||| | ||||| ||| |||| |||||||| |||||||||||||||| |||||| || Sbjct 333 AATGGCTATGTGGAGGGTTTTGTTCGAGTGGAAAATTGAAGATCTTGCTTATGAATGGCC 392 Query 449 CAAGCAAGCCCTTGGAGATATTGCTTTAGCTGTCTCATGGGTTTTCTTCCTCGTTTATAC 508 || ||||| |||||||| |||||||| ||| | || ||||||||||| || |||||| | Sbjct 393 TAAACAAGCTCTTGGAGACATTGCTTTGGCTATTTCTTGGGTTTTCTTTCTTGTTTATTC 452 Query 509 ATGGAGAGAGAAGTATGATTGATGtttttttt 540 ||||||||||||||||||||||| | ||||| Sbjct 453 TTGGAGAGAGAAGTATGATTGATGATGTTTTT 484 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26838533568 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5