BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15370.1
Length=931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478975 jgi|Araly1|478975|fgenesh2_kg.3__1676__AT3G15370.1 1354 0.0
> Ahg478975 jgi|Araly1|478975|fgenesh2_kg.3__1676__AT3G15370.1
Length=859
Score = 1354 bits (733), Expect = 0.0
Identities = 817/859 (95%), Gaps = 0/859 (0%)
Strand=Plus/Plus
Query 73 tatatatggatatGAAGGGAACATACTTAGTAACGGTTATTCTCTTGGTTAGTACGTTAA 132
||| |||||||||||| |||| ||| || ||||||||||||||||||||| |||||||||
Sbjct 1 TATCTATGGATATGAAAGGAAAATATTTGGTAACGGTTATTCTCTTGGTTGGTACGTTAA 60
Query 133 GTGTGGGGATGTGTTCTAACGGTTGGATAAGAGCTCATGCAACGTATTATGGTGTCAATG 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 GTGTGGGGATGTGTTCTAACGGTTGGATAAGAGCTCATGCAACGTATTATGGTGTTAATG 120
Query 193 ATAGCCCTGCTTCACTTGGAGGAGCTTGTGGGTATGACAATCCGTACCACGCCGGATTCG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATAGCCCTGCTTCACTTGGAGGAGCTTGTGGGTATGACAATCCGTACCACGCCGGATTCG 180
Query 253 GAGCACACACGGCGGCGCTAAGCGGTGAGCTATTCAGAAGCGGTGAGTCATGCGGTGGGT 312
|||| |||||||||||||||||||||| | ||||||||||||| ||||| ||||||||||
Sbjct 181 GAGCCCACACGGCGGCGCTAAGCGGTGCGTTATTCAGAAGCGGCGAGTCTTGCGGTGGGT 240
Query 313 GCTACCAGGTGAGGTGCGACTTTCCGGCGGATCCTAAGTGGTGTCTCCGAGGAGCCGCCG 372
||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||
Sbjct 241 GCTACCAGGTGAGGTGCGACTATCCGGCGGATCCTAAGTGGTGTCTCCGTGGAGCCACCG 300
Query 373 TGACGGTGACGGCTACAAACTTTTGCCCAACGAATAACAATAATGGTTGGTGCAATCTCC 432
||| ||||||||||||||||||||| || |||| |||||||||||||||||||||||||
Sbjct 301 TGAGGGTGACGGCTACAAACTTTTGTCCGTCGAACAACAATAATGGTTGGTGCAATCTCC 360
Query 433 CTCGCCATCACTTTGACATGTCCTCCCCCGCTTTCTTCCGCATTGCCCGTCGCGGCAATG 492
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 361 CTCGCCATCACTTTGACATGTCCTCCCCAGCTTTCTTCCGAATCGCCCGTCGCGGCAATG 420
Query 493 AAGGCATCGTCCCCGTCTTCTATCGCCGGGTGGGATGCAAAAGAAGAGGAGGCGTGAGGT 552
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGCATCGTCCCTGTCTTCTATCGCCGGGTGGGATGCAAAAGAAGAGGAGGCGTGAGGT 480
Query 553 TCACGATGAGAGGGCAAGGTAACTTCAATATGGTAATGATCTCAAACGTTGGTGGTGGCG 612
| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 481 TTACGTTGAGAGGGCAAGGTAACTTCAATATGGTAATGATCTCAAACGTTGGCGGTGGCG 540
Query 613 GCTCGGTGAGATCAGTAGCGGTGAGAGGCTCAAAGGGAAAGACTTGGCTTCAGATGACCC 672
||||||||||| | |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 GCTCGGTGAGAGCGGTAGCGGTAAGAGGCTCAAAGGGAAAGACTTGGCTTCAGATGACCC 600
Query 673 GTAATTGGGGTGCCAACTGGCAGAGCTCCGGTGATCTCCGGGGACAGAGACTCTCCTTCA 732
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 601 GTAATTGGGGTGCCAACTGGCAGAGCTCCGGCGATCTCCGGGGACAGAGACTCTCCTTCA 660
Query 733 AAGTTACTCTGACGGACAGCAAAACGCAGACATTTTTGAACGTTGTCCCTTCTTCTTGGT 792
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 661 AAGTTACTCTGACTGACAGCAAAACGCAGACGTTTTTGAACGTTGTTCCTTCTTCTTGGT 720
Query 793 GGTTTGGCCAAACCTTCTCTTCTCGAGGAAGACAATTCGTTTAACTACAAAACTAAGTCG 852
||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||
Sbjct 721 GGTTTGGCCAAACCTTCTCTTCTCGAGGACGCCAGTTCGTTTAACTACAAAACTAAGTCG 780
Query 853 TGCTCTGGTCAAAACGCAATTCTTTGCTTATTTCTGAACTTGCCCTTGTTTTAATTGGGC 912
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 781 TGCTCTGGTCAAAACGCAATTCTTTGCTTGTTTATGAACTTGCCCTTGTTTTAATTGGGC 840
Query 913 AGTGTTCCTTTGTTTCTCT 931
| |||||||| |||| |||
Sbjct 841 AATGTTCCTTCGTTTTTCT 859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34539362802
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5