BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15380.1
Length=2350
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478976 jgi|Araly1|478976|fgenesh2_kg.3__1677__AT3G15380.1 3805 0.0
Ahg887835 jgi|Araly1|887835|Al_scaffold_0230_4 669 0.0
> Ahg478976 jgi|Araly1|478976|fgenesh2_kg.3__1677__AT3G15380.1
Length=2330
Score = 3805 bits (2060), Expect = 0.0
Identities = 2250/2340 (96%), Gaps = 20/2340 (1%)
Strand=Plus/Plus
Query 20 TGTTCTCTCCGAAATTCCtttttttGGTCTCGAGGGTTTTTCAGACTGT---GAAGAGAC 76
|||||||||| |||||||| |||||| ||||||||||||||||||||| ||||||||
Sbjct 1 TGTTCTCTCCAAAATTCCTATTTTTGACCTCGAGGGTTTTTCAGACTGTGAAGAAGAGAC 60
Query 77 ATAGCTGTGGCAAAGATGAGAGGACCTTTAGGAGCAGTGATTGGAAGATATACTTCAAGT 136
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 ATAGCTGTGGCAAAGATGAGAGGACCTTTGGGAGCTGTGATTGGAAGATATACTTCAAGT 120
Query 137 GATGGGAGTGCTCCAAATGATGGGATCATCAAGCACAATAGAAAGTGCAGAGATATTACG 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATGGGAGTGCTCCAAATGATGGGATCATCAAGCACAATAGAAAGTGCAGAGATATTACG 180
Query 197 TTTCTCATCATCTTCATTGCCTTTTGGGTTTCAATGATTGTCAATTCCAGCTTTGGTTTC 256
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTTCTTGTCATCTTCATTGCCTTTTGGGTTTCAATGATTGTCAATTCCAGCTTTGGTTTC 240
Query 257 AACCAAGGCAACCCATTAAGACTCACATATGGATTGGACTATGAAGGGAATGTGTGTGGT 316
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 AACCAAGGCAACCCCTTAAGACTCACTTATGGATTGGACTATGAAGGGAATGTGTGTGGT 300
Query 317 AGCAAGCATCGTCACCGTGACCTTACTCAACTTGAGCTTAGATATTGGTTAAACCCTAAC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGCAAGCATCGTCACCGTGACCTTACTCAACTTGAGCTTAGATATTGGTTAAACCCTAAC 360
Query 377 CAAGTTTATGAAAGTGGTTTGAAAGATGGGGAACTTAAATTGGCTAATGCTAGAACTATT 436
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 CAAGTTTATGAAAGTGGTTTGAAAGATGGGGAACTCAAATTGGCTAATGCTAGAACTATT 420
Query 437 TGTCTCTTGGATTGCCCTGCACCTTCTGATGATACTCTCAACTGGGTATGTGACTATCCT 496
|||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 421 TGTCTCTTGGATTGTCCTGCACCAACTGATGATACTCTCAACTGGGTCTGTGACTATCCT 480
Query 497 GACGGCGAGATTCGTCTCAAGATGAATGATTGGATCGATAGGAACTATGATTATTTTGAG 556
|| ||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct 481 GATGGCGAGATTCGTCTCAAGATGAATGATTGGATCGATAGGAATTACGATTACTTTGAG 540
Query 557 TTTCTTACTCCAGAAATGAGGAATTCCTCTCTTCAGCTTCAGGGTCCTTGTTACCCTGTA 616
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 541 TTTCTTACTCCAGAAATGAGGAATTCTTCTCTTCAGCTTCAGGGTCCTTGTTACCCTGAA 600
Query 617 ATATTCCCTAGTGTGAATGTTTATTGGAGCTGCCAATATATTGCTCGTGCTTCAAATTCA 676
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 ATATTCCCTAGTGTGAATGTTTATTGGAGCTGCCAATATATTGCTCGTGCTTCGAATTCA 660
Query 677 TCCTTACGCCACTGGCAGCAGATGGGTGGTGTTAATATTCAAGAGGACATGATCATAGAC 736
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 661 TCCTTGCGCCACTGGCAGCAGATGGGTGGTGTGAATATTCAAGAGGACATGATCATAGAC 720
Query 737 AAATCAATTAGAAGGTCAATGAACTCTCGTGCCTCAGTTCTAAAGCGTTATGTGGCTGAT 796
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 721 AAATCAATTAGAAGGTCAATGAATTCTCGTGCCTCAGTTCTAAAGCGTTATGTGGCTGAT 780
Query 797 ATTGGGAAGTCATGGCCAGTATTGATCGTTTGTGGAGGCCTTGTTCCACTGTTTCTATCC 856
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 781 ATTGGGAAGTCATGGCCAGTATTGATCGTTTGTGGAGGCCTTGTCCCACTGTTTCTATCC 840
Query 857 ATTATTTGGCTGCTTCTTATTCGACATTTTGTTGCCGCCATGCCCTGGATAACTGTTGTC 916
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATTATCTGGCTGCTTCTTATTCGACATTTTGTTGCCGCCATGCCCTGGATAACTGTTGTC 900
Query 917 CTTTTCAACATGCTCTTAATATCAGTCACAGTGTTCTATTACCTGAAAGCTGGATGGATT 976
|||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||||||
Sbjct 901 CTTTTCAACATGCTCTTAATATCAGTGACAATGTTCTATTACTTAAAAGCTGGATGGATT 960
Query 977 GGGAATGATGCTGTAACACCTATTATTGGTGAGCATGACCCATACTTTCATGTGTATGGT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGGAATGATGCTGTAACACCTATTATTGGTGAGCATGACCCATACTTTCATGTGTATGGT 1020
Query 1037 CGAGAACTGACTCATGTTCGTGGAGTTGCCATTCTGATGACTTTTATCTCTGTTGTTGCT 1096
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1021 CGAGAGCTGACTCATGTTCGTGGAGTCGCCATTCTGATGACTTTTATCTCAGTTGTTGCT 1080
Query 1097 ATTCTCACTTCAATTGCCATTATCCGCCGAATTCTCATGGCAACATCAGTCCTCAAGGTA 1156
|||||||||||||| |||||||||||||||||||||||||| | | || || | |||
Sbjct 1081 ATTCTCACTTCAATCGCCATTATCCGCCGAATTCTCATGGC-A-A-CA----TC-A-GTA 1131
Query 1157 GCTGCTAAAGTAATTGGAGAAGTTCAAGCGCTTATTATATTCCCGGCTATACCGTTCGCG 1216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 GCTGCTAAAGTAATTGGAGAAGTTCAAGCGCTTATTATATTCCCGGCTATACCGTTCGCG 1191
Query 1217 ATGCTAGCAATATTCTATATGTTCTGGATATCAGCGGCTCTCCATCTCTTCAGTTCTGGT 1276
||||| || |||||||||||||||||| | ||||||||||||||||| ||||| ||||||
Sbjct 1192 ATGCTCGCGATATTCTATATGTTCTGGTTGTCAGCGGCTCTCCATCTATTCAGCTCTGGT 1251
Query 1277 CAAGTTGTTCAGAACAACTGCAACAACACTAACTGCTGTGCGTATGATCTCGTGTTAAAG 1336
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1252 CAAGTTGTTCAGAACAACTGCAACAACACTAACTGCTGCGCATATGATCTCGTGTTAAAG 1311
Query 1337 AAAGTTAATTGTGACCGTTGTTGCGGTTATAGCATACATTACACCCCTCACATCACCATT 1396
||||| ||||||||||||||||||||||| ||||||| |||||| |||||||||||||||
Sbjct 1312 AAAGTGAATTGTGACCGTTGTTGCGGTTACAGCATACGTTACACTCCTCACATCACCATT 1371
Query 1397 GCTATATTCTTCCACCTGTTTGGTTGCTATTGGGCTACACAGTTCTTCATTGCATCTTCT 1456
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GCTATATTCTTCCACCTGTTTGGTTGCTATTGGGCTACACAGTTCTTCATTGCATCTTCC 1431
Query 1457 GCGACAGTGATTGCTGGCTCTGTTGCCTCCTATTATTGGGCTCAAGGGGAAGCATCGCCA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GCGACAGTGATTGCTGGCTCTGTTGCCTCCTATTATTGGGCTCAAGGGGAAGCATCGCCA 1491
Query 1517 GAGATACCGTTTCTTCCTGTTTTCGCATCAATGAAGCGGCTTGCACGCTACAACCTAGGA 1576
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1492 GAGATACCGTTTCTTCCTGTTTTTGCCTCAATGAAGCGGCTTGCACGCTACAACCTAGGA 1551
Query 1577 TCCGTGGCTCTTGGTTCACTCATTGTCTCTTTTGTTGAGTCTGTTCGGTTCATTCTCGAA 1636
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 TCTGTGGCTCTTGGTTCACTCATTGTCTCTTTTGTTGAGTCTGTTCGGTTCATTCTCGAA 1611
Query 1637 GCAATTCGTCGTAAAACAAAAGTAAGCGGGACCATACCTGATCACTGGTTTTGGAGAATG 1696
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1612 GCAATTCGTCGTAGAACAAAAGTAAGCGGGACCACACCTGATCACTGGTTTTGGAGAATG 1671
Query 1697 GCTCATTACACTTCACGTGGTTGTCTCAAAAGTGTGGAGTGGACCATCAAATCGGTTAAC 1756
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1672 GCTCATTACACTTCACGTGGTTGTCTCAAAAGCGTGGAGTGGACCATCAAATCGGTTAAC 1731
Query 1757 CGTAATGCCTACATAATGATTGCTATAACAGGGAAAAGCTTCTGCAAATCGTCTGCAATC 1816
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1732 CGTAATGCCTACATAATGATTGCTATAACAGGGAAAAGCTTCTGCAAATCGTCTGCAATA 1791
Query 1817 GCGACAGAGCTGATCATAAGCAACATTCTGAGGATAGGGAAAGTTAATGTGATAGGAGAT 1876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1792 GCGACAGAGCTGATCATAAGCAACATTCTGAGGATAGGGAAAGTTAATGTGATAGGAGAT 1851
Query 1877 GTTATATTGTTTCTAGGAAAGCTTTGTGTGAGTCTCTTCAGTGCTCTCTTTGGCTTCTTG 1936
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 GTTATACTGTTTCTAGGAAAGCTTTGTGTGAGTCTCTTCAGTGCTCTCTTTGGCTTCTTG 1911
Query 1937 ATGTTGGATTCGCACCGATATCGTGCTTCTCACAACAAAGTCTCATCCCCGCTATTACCT 1996
|||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1912 ATGTTGGATTCGCATAGATATCGGGATTCTCACAACAAAGTCTCATCCCCGCTATTACCT 1971
Query 1997 GTTTTGGCATGTTGGGCATTGGGGTATATTGTGGCAACACTTTTCTTTGCGGTGGTTGAG 2056
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1972 GTTTTGGCATGTTGGGCATTGGGGTATATTGTTGCAACACTTTTCTTTGCGGTGGTTGAG 2031
Query 2057 ATGTCGATAGACACCATCATTCTCTCCTTCTGTCAAGACTCAGAGGAGAATCAAGGGAAT 2116
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 ATGTCGATAGACACAATCATTCTCTCCTTCTGTCAAGACTCAGAGGAGAATCAAGGGAAT 2091
Query 2117 GCTCAGCACGCACCACCTCTTCTGCTTGAAACTTTAGATAGCAATCAGGAGGAAGAGGTT 2176
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2092 GCTCAGCACGCGCCACCTCTTCTGCTTGAAACTTTAGATAGCAATCAGGAGGAAGAGGTT 2151
Query 2177 CAGAGTCTTACTCACTGATAGATCCATA--C-T---GTATAAGTTTTGTTTCTTCTTTGG 2230
||||| ||||| |||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 2152 CAGAGACTTACCCACTGATAGATCCATATACGTACTGTATAAGTTTTGTTTCTTCTTTGG 2211
Query 2231 TTGGCCGGTTTATATGGTTTTTTAAAA-TAGAATCTTTTATCTCTACAACATTCTAAGCA 2289
||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||
Sbjct 2212 TTGGCCGGTTTATATGGTTTTTTAAAAATAGAATCTTTTCTCTCTAAAACATTCTAAGCA 2271
Query 2290 TATTGTAATGTCAGATGGCTTGATAATTCTTCGATTCCGAAACCAAAAATCATATTTCCG 2349
||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||
Sbjct 2272 GATTGTAATGTCAGATGGCTTGATCAT-CTTCGATTCTGAAACCAAAAATCATATTTCCG 2330
> Ahg887835 jgi|Araly1|887835|Al_scaffold_0230_4
Length=630
Score = 669 bits (362), Expect = 0.0
Identities = 382/392 (97%), Gaps = 0/392 (0%)
Strand=Plus/Plus
Query 1513 GCCAGAGATACCGTTTCTTCCTGTTTTCGCATCAATGAAGCGGCTTGCACGCTACAACCT 1572
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 48 GCCAGAGATACCGTTTCTTCCTGTTTTTGCCTCAATGAAGCGGCTTGCACGCTACAACCT 107
Query 1573 AGGATCCGTGGCTCTTGGTTCACTCATTGTCTCTTTTGTTGAGTCTGTTCGGTTCATTCT 1632
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 AGGATCTGTGGCTCTTGGTTCACTCATTGTCTCTTTTGTTGAGTCTGTTCGGTTCATTCT 167
Query 1633 CGAAGCAATTCGTCGTAAAACAAAAGTAAGCGGGACCATACCTGATCACTGGTTTTGGAG 1692
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 168 CGAAGCAATTCGTCGTAGAACAAAAGTAAGCGGGACCACACCTGATCACTGGTTTTGGAG 227
Query 1693 AATGGCTCATTACACTTCACGTGGTTGTCTCAAAAGTGTGGAGTGGACCATCAAATCGGT 1752
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 228 AATGGCTCATTACACTTCACGTGGTTGTCTCAAAAGCGTGGAGTGGACCATCAAATCGGT 287
Query 1753 TAACCGTAATGCCTACATAATGATTGCTATAACAGGGAAAAGCTTCTGCAAATCGTCTGC 1812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 288 TAACCGTAATGCCTACATAATGATTGCTATAACAGGGAAAAGCTTCTGCAAATCGTCTGC 347
Query 1813 AATCGCGACAGAGCTGATCATAAGCAACATTCTGAGGATAGGGAAAGTTAATGTGATAGG 1872
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 348 AATAGCGACAGAGCTGATCATAAGCAACATTCTGAGGATAGGGAAAGTTAATGTGATAGG 407
Query 1873 AGATGTTATATTGTTTCTAGGAAAGCTTTGTG 1904
|||||| ||| ||||||||||| |||||||||
Sbjct 408 AGATGTAATACTGTTTCTAGGACAGCTTTGTG 439
Score = 318 bits (172), Expect = 1e-85
Identities = 189/197 (96%), Gaps = 1/197 (1%)
Strand=Plus/Plus
Query 1999 TTTG-GCATGTTGGGCATTGGGGTATATTGTGGCAACACTTTTCTTTGCGGTGGTTGAGA 2057
|||| |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 434 TTTGTGCATGTTGGGCATTGGGGTATATTGTGGCAACACTTTTCTTTCCGGTGCTTGAGA 493
Query 2058 TGTCGATAGACACCATCATTCTCTCCTTCTGTCAAGACTCAGAGGAGAATCAAGGGAATG 2117
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TGTCGATAGACACAATCATTCTCTCCTTCTGTCAAGACTCAGAGGAGAATCAAGGGAATG 553
Query 2118 CTCAGCACGCACCACCTCTTCTGCTTGAAACTTTAGATAGCAATCAGGAGGAAGAGGTTC 2177
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 554 CTCAGCACGCGCCACCTCTTCTGCTTGAAACTTTAGATAGCAATCAAGAGGAAGAGGTTC 613
Query 2178 AGAGTCTTACTCACTGA 2194
|||| ||||| ||||||
Sbjct 614 AGAGACTTACCCACTGA 630
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88521729380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5