BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G15390.1 Length=1739 Score E Sequences producing significant alignments: (Bits) Value Ahg478977 jgi|Araly1|478977|fgenesh2_kg.3__1678__AT3G15390.1 1131 0.0 Ahg497335 jgi|Araly1|497335|fgenesh2_kg.230__7__AT3G15390.1 1120 0.0 > Ahg478977 jgi|Araly1|478977|fgenesh2_kg.3__1678__AT3G15390.1 Length=1407 Score = 1131 bits (612), Expect = 0.0 Identities = 692/731 (95%), Gaps = 4/731 (1%) Strand=Plus/Plus Query 929 GGTTCACAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 988 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 679 GGTTCAGAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 738 Query 989 TTCTCAGGTGCGGAAAGATATGT-GGACAAACCAAAAGTAACTCGACATTTTGGAGAAAG 1047 ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 739 TTCTCAGGTACGGAAAGATATGTGGGA-GAACCAAAAGTAACTCGACATTTTGGAGAAAG 797 Query 1048 GAGACCTGGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAAGACCCTTTTCAAGAGAG 1107 |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 798 GAGACCAAGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAGGACCCTTTTCAAGAGAG 857 Query 1108 AGTAGTTGCTGTGAAACAATCGTCCAATACATCTAAAGAAGATGACGATGAAAATGAATT 1167 |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| || Sbjct 858 AGTAGTTGCTGTAAAAAAATCGTCCAATACATCTAAAGAAGATGAAGATGAAAATGAGTT 917 Query 1168 TAAGGCACATCGTAAAGCAGTACGCGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 1227 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 918 TAAGGCACATCGTAAAGCAGTACGTGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 977 Query 1228 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1037 Query 1288 ACACTTTTTTGGACAAAAAGCTCGAGAAGCAGATGACAAATCTGTAGCAAAGATGATTGA 1347 ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| Sbjct 1038 ACACTTTTTTGGACAAAAAGCCCGAGAAGCGGATGACAAATCTATAGCAAAGATGATTGA 1097 Query 1348 CGTCAATCAAGAAGATGATTCAACTTACGAGGAAGACGAGGTAGTGACAGTAAATATGAA 1407 ||||| |||| |||||||| ||||||||||| ||||||||||||||||| ||| |||| Sbjct 1098 TGTCAAGAAAGACGATGATTCGACTTACGAGGAGGACGAGGTAGTGACAGTGAATGTGAA 1157 Query 1408 TGAACACGAAGCAAAAGAAGCTCTTCGTCTTCTCAAGCGCCAACTTATTTACTTCTCTGG 1467 |||||||||| |||| ||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1158 TGAACACGAAACAAAGGAAGCTCTTCGTCTTCTCAAGCGCCAACTAAATTACTTCTCTGG 1217 Query 1468 CATTTCATCTTTCAAGTACCTCAGAGTC-CAATTGGGTGAGAAGAAGGAAGATTTCAAGA 1526 |||||||||||| ||||||||||||||| || |||||||| || |||||||||||||||| Sbjct 1218 CATTTCATCTTTTAAGTACCTCAGAGTCGCA-TTGGGTGACAAAAAGGAAGATTTCAAGA 1276 Query 1527 GCAAACGAAAGCATATCGTAAAGCTGCTGGAGGGAGAATCCATTCCTTGGACTGAAGAAG 1586 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 1277 GCAAACGAAAGCATATCGTTAAGCTGCTGGAGGGAGAATCCATTGCTTGGACTGAAGAAG 1336 Query 1587 ATGGCGGCCTCGTGATAATGATTCGGGTTGATGAGATTGACCCCAAGAAATTGAGTTTTG 1646 || ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||| Sbjct 1337 ATAGCGGCCTCGTGATGATGATTCGTGTTGATAAGATTGACCCCAAGAAATTGAGTTTTG 1396 Query 1647 CCAAGAAATAA 1657 ||||||||||| Sbjct 1397 CCAAGAAATAA 1407 Score = 1014 bits (549), Expect = 0.0 Identities = 618/652 (95%), Gaps = 2/652 (0%) Strand=Plus/Plus Query 185 ATGTCAAAGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 244 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTATGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 60 Query 245 CTCGATACTTTTGGTTCTCGTTTTTCTCTTGATGACATTGCCGCTGCTTACTGCCAAGCT 304 |||||| | ||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct 61 CTCGATGCCTTTGGTTCTCGTTTTTCGCTTGATGACATTGCTGCTGCTTATTGCCAAGCA 120 Query 305 AGCCAGAATGTCGATGTAGCTGGTGAGATTCTCTCTGCAATGGCTGAAAAGACGCCTCAA 364 || ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 121 AGTCAGAATGTCGATGTAGCTGGTGAGATTCTCTTTGCAATGACTGAAAAGACGCCTCAA 180 Query 365 TGTGACCAAGTTGAAATGAAG-ACAGCAACCTCAAAACCAACTCAGGTCTATGTTCCTAA 423 |||||||| |||||||||||| || | |||||||||||||| ||||||||||||||| || Sbjct 181 TGTGACCACGTTGAAATGAAGAAC-GAAACCTCAAAACCAAGTCAGGTCTATGTTCCCAA 239 Query 424 GGAAGTTCCACGACAAGAGGATAGCAAAGCGAAAGTATGGAGGCCGAAGAGAAATTCTAT 483 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 240 GGAAGTTCGACGACAAGAGGATAGCAAAGCCAAAGTATGGAGGCCGAAGAGAAATTCTAT 299 Query 484 ATCAAATGGTACTGTTTCAAGTGTTATTGGTAAGGAGTATGCTAGAACCAGGCCTATATC 543 |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 ATCAGTTGGTACTGTTTCAAGTGTTATCGGTAAGGAGTATGCTAGAACCAGGCCTATATC 359 Query 544 AAATGCTCCCAAAGAAGCAACTAAACCATTGAAGATAAACTCAAGGGATATTCCAGAAAC 603 ||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||||||| Sbjct 360 AAATGCTCCCAGAGAAGCAACTAAGCCAATGAAGATAGACTCAAGGGATATTCCAGAAAC 419 Query 604 TGAGATATGGAGTGAAGAAATGCGAAAAAGTAACGAGGGAAAGATAAGCAGGGCTCCAAC 663 ||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| Sbjct 420 TGAGATATGGAGTGAAGAAATGCCAAAGAGTAACGAGGCAAAGATAAGCAGGGCTCCAAC 479 Query 664 TGATGTTGAGGAATTTATTGTTAAGATGCTTGGAGAAGGTTTTCAAGCTAGCCAAGAAGT 723 |||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 480 TGATGTGGAGGAATTTATCGTTAAGATGCTTGGAGAAGGCTTTCAAGCTAGCCAAGATGT 539 Query 724 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 599 Query 784 TGACTTTTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 835 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGACTTGTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 651 > Ahg497335 jgi|Araly1|497335|fgenesh2_kg.230__7__AT3G15390.1 Length=1407 Score = 1120 bits (606), Expect = 0.0 Identities = 691/732 (94%), Gaps = 6/732 (1%) Strand=Plus/Plus Query 929 GGTTCACAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 988 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 679 GGTTCAGAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 738 Query 989 TTCTCAGGTGCGGAAAGATATGT-GGACAAACCAAAAGTAACTCGACATTTTGGAGAAAG 1047 ||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 739 TTCTCAGGTACGGAAAGATATGTGGGA-GAACCAAAAGTAACTCGACATTTTGGAGAAAG 797 Query 1048 GAGACCTGGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAAGACCCTTTTCAAGAGAG 1107 |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 798 GAGACCAAGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAGGACCCTTTTCAAGAGAG 857 Query 1108 AGTAGTTGCTGTGAAACAATCGTCCAATACATCTAAAGAAGATGACGATGAAAATGAATT 1167 |||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| || Sbjct 858 AGTAGTTGCTGTAAAAAAATCGTCCAATACATCTAAAGAAGATGAAGATGAAAATGAGTT 917 Query 1168 TAAGGCACATCGTAAAGCAGTACGCGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 1227 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 918 TAAGGCACATCGTAAAGCAGTACGTGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 977 Query 1228 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 978 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1037 Query 1288 ACACTTTTTTGGACAAAAAGCTCGAGAAGCAGATGACAAATCTGTAGCAAAGATGATTGA 1347 ||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||| Sbjct 1038 ACACTTTTTTGGACAAAAAGCCCGAGAAGCGGATGACAAATCTATAGCAAAGATGATTGA 1097 Query 1348 CGTCAATCAAGAAGATGATTCAACTTACGAGGAAGACGAGGTAGTGACAGTAAATATGAA 1407 ||||| |||| |||||||| ||||||||||| ||||||||||||||||| ||| |||| Sbjct 1098 TGTCAAGAAAGACGATGATTCGACTTACGAGGAGGACGAGGTAGTGACAGTGAATGTGAA 1157 Query 1408 TGAACACGAAGCAAAAGAAGCTCTTCGTCTTCTCAAGCGCCAACTTA-TTTACTTCTCTG 1466 |||||||||| |||| ||||| ||||||||||||||||||||||| | ||| |||||||| Sbjct 1158 TGAACACGAAACAAAGGAAGCACTTCGTCTTCTCAAGCGCCAACTAAATTT-CTTCTCTG 1216 Query 1467 GCATTTCATCTTTCAAGTACCTCAGAGTC-CAATTGGGTGAGAAGAAGGAAGATTTCAAG 1525 |||||||| |||||||||||||||||||| || |||||||| || ||||||||||||||| Sbjct 1217 GCATTTCAACTTTCAAGTACCTCAGAGTCGCA-TTGGGTGACAAAAAGGAAGATTTCAAG 1275 Query 1526 AGCAAACGAAAGCATATCGTAAAGCTGCTGGAGGGAGAATCCATTCCTTGGACTGAAGAA 1585 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1276 AGCAAACGAAAGCATATCGTTAAGCTGCTGGAGGGAGAATCCATTGCTTGGACTGAAGAA 1335 Query 1586 GATGGCGGCCTCGTGATAATGATTCGGGTTGATGAGATTGACCCCAAGAAATTGAGTTTT 1645 ||| ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| Sbjct 1336 GATAGCGGCCTCGTGATGATGATTCGTGTTGATAAGATTGACCCCAAGAAATTGAGTTTT 1395 Query 1646 GCCAAGAAATAA 1657 |||||||||||| Sbjct 1396 GCCAAGAAATAA 1407 Score = 992 bits (537), Expect = 0.0 Identities = 614/652 (94%), Gaps = 2/652 (0%) Strand=Plus/Plus Query 185 ATGTCAAAGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 244 ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTATGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 60 Query 245 CTCGATACTTTTGGTTCTCGTTTTTCTCTTGATGACATTGCCGCTGCTTACTGCCAAGCT 304 |||||| | ||||||||||||||||| |||||||||||||| |||||||| |||||||| Sbjct 61 CTCGATGCCTTTGGTTCTCGTTTTTCGCTTGATGACATTGCTGCTGCTTATTGCCAAGCA 120 Query 305 AGCCAGAATGTCGATGTAGCTGGTGAGATTCTCTCTGCAATGGCTGAAAAGACGCCTCAA 364 || ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 121 AGTCAGAATGTCGATGTAGCTGGTGAGATTCTCTTTGCAATGACTGAAAAGACGCCTCAA 180 Query 365 TGTGACCAAGTTGAAATGAAG-ACAGCAACCTCAAAACCAACTCAGGTCTATGTTCCTAA 423 |||||||| |||||||||||| || | |||||||||||||| ||||||||||||||| || Sbjct 181 TGTGACCACGTTGAAATGAAGAAC-GAAACCTCAAAACCAAGTCAGGTCTATGTTCCCAA 239 Query 424 GGAAGTTCCACGACAAGAGGATAGCAAAGCGAAAGTATGGAGGCCGAAGAGAAATTCTAT 483 |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 240 GGAAGTTCGACGACAAGAGGATAGCAAAGCCAAAGTATGGAGGCCGAAGAGAAATTCTAT 299 Query 484 ATCAAATGGTACTGTTTCAAGTGTTATTGGTAAGGAGTATGCTAGAACCAGGCCTATATC 543 |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 300 ATCAGTTGGTACTGTTTCAAGTGTTATCGGTAAGGAGTATGCTAGAACCAGGCCTATATC 359 Query 544 AAATGCTCCCAAAGAAGCAACTAAACCATTGAAGATAAACTCAAGGGATATTCCAGAAAC 603 ||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||||||| Sbjct 360 AAATGCTCCCAGAGAAGCAACTAAGCCAATGAAGATAGACTCAAGGGATATTCCAGAAAC 419 Query 604 TGAGATATGGAGTGAAGAAATGCGAAAAAGTAACGAGGGAAAGATAAGCAGGGCTCCAAC 663 |||| |||||||||||||||||| ||| ||||||||| ||||| || |||||||||||| Sbjct 420 TGAGTTATGGAGTGAAGAAATGCCAAAGAGTAACGAGCCAAAGACAAACAGGGCTCCAAC 479 Query 664 TGATGTTGAGGAATTTATTGTTAAGATGCTTGGAGAAGGTTTTCAAGCTAGCCAAGAAGT 723 |||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| || Sbjct 480 TGATGTGGAGGAATTTATCGTTAAGATGCTTGGAGAAGGCTTTCAAGCTAGCCAAGATGT 539 Query 724 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 783 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 599 Query 784 TGACTTTTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 835 |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 TGACTTGTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 651 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65248589685 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5