BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15390.1
Length=1739
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478977 jgi|Araly1|478977|fgenesh2_kg.3__1678__AT3G15390.1 1131 0.0
Ahg497335 jgi|Araly1|497335|fgenesh2_kg.230__7__AT3G15390.1 1120 0.0
> Ahg478977 jgi|Araly1|478977|fgenesh2_kg.3__1678__AT3G15390.1
Length=1407
Score = 1131 bits (612), Expect = 0.0
Identities = 692/731 (95%), Gaps = 4/731 (1%)
Strand=Plus/Plus
Query 929 GGTTCACAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 988
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGTTCAGAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 738
Query 989 TTCTCAGGTGCGGAAAGATATGT-GGACAAACCAAAAGTAACTCGACATTTTGGAGAAAG 1047
||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 739 TTCTCAGGTACGGAAAGATATGTGGGA-GAACCAAAAGTAACTCGACATTTTGGAGAAAG 797
Query 1048 GAGACCTGGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAAGACCCTTTTCAAGAGAG 1107
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 798 GAGACCAAGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAGGACCCTTTTCAAGAGAG 857
Query 1108 AGTAGTTGCTGTGAAACAATCGTCCAATACATCTAAAGAAGATGACGATGAAAATGAATT 1167
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 858 AGTAGTTGCTGTAAAAAAATCGTCCAATACATCTAAAGAAGATGAAGATGAAAATGAGTT 917
Query 1168 TAAGGCACATCGTAAAGCAGTACGCGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 1227
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 918 TAAGGCACATCGTAAAGCAGTACGTGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 977
Query 1228 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1037
Query 1288 ACACTTTTTTGGACAAAAAGCTCGAGAAGCAGATGACAAATCTGTAGCAAAGATGATTGA 1347
||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 1038 ACACTTTTTTGGACAAAAAGCCCGAGAAGCGGATGACAAATCTATAGCAAAGATGATTGA 1097
Query 1348 CGTCAATCAAGAAGATGATTCAACTTACGAGGAAGACGAGGTAGTGACAGTAAATATGAA 1407
||||| |||| |||||||| ||||||||||| ||||||||||||||||| ||| ||||
Sbjct 1098 TGTCAAGAAAGACGATGATTCGACTTACGAGGAGGACGAGGTAGTGACAGTGAATGTGAA 1157
Query 1408 TGAACACGAAGCAAAAGAAGCTCTTCGTCTTCTCAAGCGCCAACTTATTTACTTCTCTGG 1467
|||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1158 TGAACACGAAACAAAGGAAGCTCTTCGTCTTCTCAAGCGCCAACTAAATTACTTCTCTGG 1217
Query 1468 CATTTCATCTTTCAAGTACCTCAGAGTC-CAATTGGGTGAGAAGAAGGAAGATTTCAAGA 1526
|||||||||||| ||||||||||||||| || |||||||| || ||||||||||||||||
Sbjct 1218 CATTTCATCTTTTAAGTACCTCAGAGTCGCA-TTGGGTGACAAAAAGGAAGATTTCAAGA 1276
Query 1527 GCAAACGAAAGCATATCGTAAAGCTGCTGGAGGGAGAATCCATTCCTTGGACTGAAGAAG 1586
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 1277 GCAAACGAAAGCATATCGTTAAGCTGCTGGAGGGAGAATCCATTGCTTGGACTGAAGAAG 1336
Query 1587 ATGGCGGCCTCGTGATAATGATTCGGGTTGATGAGATTGACCCCAAGAAATTGAGTTTTG 1646
|| ||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1337 ATAGCGGCCTCGTGATGATGATTCGTGTTGATAAGATTGACCCCAAGAAATTGAGTTTTG 1396
Query 1647 CCAAGAAATAA 1657
|||||||||||
Sbjct 1397 CCAAGAAATAA 1407
Score = 1014 bits (549), Expect = 0.0
Identities = 618/652 (95%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 185 ATGTCAAAGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 244
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTATGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 60
Query 245 CTCGATACTTTTGGTTCTCGTTTTTCTCTTGATGACATTGCCGCTGCTTACTGCCAAGCT 304
|||||| | ||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 61 CTCGATGCCTTTGGTTCTCGTTTTTCGCTTGATGACATTGCTGCTGCTTATTGCCAAGCA 120
Query 305 AGCCAGAATGTCGATGTAGCTGGTGAGATTCTCTCTGCAATGGCTGAAAAGACGCCTCAA 364
|| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 121 AGTCAGAATGTCGATGTAGCTGGTGAGATTCTCTTTGCAATGACTGAAAAGACGCCTCAA 180
Query 365 TGTGACCAAGTTGAAATGAAG-ACAGCAACCTCAAAACCAACTCAGGTCTATGTTCCTAA 423
|||||||| |||||||||||| || | |||||||||||||| ||||||||||||||| ||
Sbjct 181 TGTGACCACGTTGAAATGAAGAAC-GAAACCTCAAAACCAAGTCAGGTCTATGTTCCCAA 239
Query 424 GGAAGTTCCACGACAAGAGGATAGCAAAGCGAAAGTATGGAGGCCGAAGAGAAATTCTAT 483
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 GGAAGTTCGACGACAAGAGGATAGCAAAGCCAAAGTATGGAGGCCGAAGAGAAATTCTAT 299
Query 484 ATCAAATGGTACTGTTTCAAGTGTTATTGGTAAGGAGTATGCTAGAACCAGGCCTATATC 543
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 ATCAGTTGGTACTGTTTCAAGTGTTATCGGTAAGGAGTATGCTAGAACCAGGCCTATATC 359
Query 544 AAATGCTCCCAAAGAAGCAACTAAACCATTGAAGATAAACTCAAGGGATATTCCAGAAAC 603
||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 360 AAATGCTCCCAGAGAAGCAACTAAGCCAATGAAGATAGACTCAAGGGATATTCCAGAAAC 419
Query 604 TGAGATATGGAGTGAAGAAATGCGAAAAAGTAACGAGGGAAAGATAAGCAGGGCTCCAAC 663
||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 420 TGAGATATGGAGTGAAGAAATGCCAAAGAGTAACGAGGCAAAGATAAGCAGGGCTCCAAC 479
Query 664 TGATGTTGAGGAATTTATTGTTAAGATGCTTGGAGAAGGTTTTCAAGCTAGCCAAGAAGT 723
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 480 TGATGTGGAGGAATTTATCGTTAAGATGCTTGGAGAAGGCTTTCAAGCTAGCCAAGATGT 539
Query 724 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 599
Query 784 TGACTTTTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 835
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGACTTGTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 651
> Ahg497335 jgi|Araly1|497335|fgenesh2_kg.230__7__AT3G15390.1
Length=1407
Score = 1120 bits (606), Expect = 0.0
Identities = 691/732 (94%), Gaps = 6/732 (1%)
Strand=Plus/Plus
Query 929 GGTTCACAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 988
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGTTCAGAGGAAGGGCGTAATGCTAAGAATGGTCTTGAAAAGGAAGTTTTAGAAGCTTTG 738
Query 989 TTCTCAGGTGCGGAAAGATATGT-GGACAAACCAAAAGTAACTCGACATTTTGGAGAAAG 1047
||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 739 TTCTCAGGTACGGAAAGATATGTGGGA-GAACCAAAAGTAACTCGACATTTTGGAGAAAG 797
Query 1048 GAGACCTGGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAAGACCCTTTTCAAGAGAG 1107
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 798 GAGACCAAGAGTTGCTGGTCGTCCTGTTTTTAAACCTCTGGAGGACCCTTTTCAAGAGAG 857
Query 1108 AGTAGTTGCTGTGAAACAATCGTCCAATACATCTAAAGAAGATGACGATGAAAATGAATT 1167
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 858 AGTAGTTGCTGTAAAAAAATCGTCCAATACATCTAAAGAAGATGAAGATGAAAATGAGTT 917
Query 1168 TAAGGCACATCGTAAAGCAGTACGCGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 1227
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 918 TAAGGCACATCGTAAAGCAGTACGTGAGCATTTGAATCAGATGAAAGAATATTATGGAGC 977
Query 1228 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 TGCTGCAGAAGCATTCTCCAAAGGAGAAACCGAGCGAGCACACAGACTCGTGGAGAAGGG 1037
Query 1288 ACACTTTTTTGGACAAAAAGCTCGAGAAGCAGATGACAAATCTGTAGCAAAGATGATTGA 1347
||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||
Sbjct 1038 ACACTTTTTTGGACAAAAAGCCCGAGAAGCGGATGACAAATCTATAGCAAAGATGATTGA 1097
Query 1348 CGTCAATCAAGAAGATGATTCAACTTACGAGGAAGACGAGGTAGTGACAGTAAATATGAA 1407
||||| |||| |||||||| ||||||||||| ||||||||||||||||| ||| ||||
Sbjct 1098 TGTCAAGAAAGACGATGATTCGACTTACGAGGAGGACGAGGTAGTGACAGTGAATGTGAA 1157
Query 1408 TGAACACGAAGCAAAAGAAGCTCTTCGTCTTCTCAAGCGCCAACTTA-TTTACTTCTCTG 1466
|||||||||| |||| ||||| ||||||||||||||||||||||| | ||| ||||||||
Sbjct 1158 TGAACACGAAACAAAGGAAGCACTTCGTCTTCTCAAGCGCCAACTAAATTT-CTTCTCTG 1216
Query 1467 GCATTTCATCTTTCAAGTACCTCAGAGTC-CAATTGGGTGAGAAGAAGGAAGATTTCAAG 1525
|||||||| |||||||||||||||||||| || |||||||| || |||||||||||||||
Sbjct 1217 GCATTTCAACTTTCAAGTACCTCAGAGTCGCA-TTGGGTGACAAAAAGGAAGATTTCAAG 1275
Query 1526 AGCAAACGAAAGCATATCGTAAAGCTGCTGGAGGGAGAATCCATTCCTTGGACTGAAGAA 1585
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1276 AGCAAACGAAAGCATATCGTTAAGCTGCTGGAGGGAGAATCCATTGCTTGGACTGAAGAA 1335
Query 1586 GATGGCGGCCTCGTGATAATGATTCGGGTTGATGAGATTGACCCCAAGAAATTGAGTTTT 1645
||| ||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1336 GATAGCGGCCTCGTGATGATGATTCGTGTTGATAAGATTGACCCCAAGAAATTGAGTTTT 1395
Query 1646 GCCAAGAAATAA 1657
||||||||||||
Sbjct 1396 GCCAAGAAATAA 1407
Score = 992 bits (537), Expect = 0.0
Identities = 614/652 (94%), Gaps = 2/652 (0%)
Strand=Plus/Plus
Query 185 ATGTCAAAGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 244
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTATGATTGCAAGCTCTTCGAATAGTGATCCTGATTCAAGAAGCTTACAAGTGCTT 60
Query 245 CTCGATACTTTTGGTTCTCGTTTTTCTCTTGATGACATTGCCGCTGCTTACTGCCAAGCT 304
|||||| | ||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 61 CTCGATGCCTTTGGTTCTCGTTTTTCGCTTGATGACATTGCTGCTGCTTATTGCCAAGCA 120
Query 305 AGCCAGAATGTCGATGTAGCTGGTGAGATTCTCTCTGCAATGGCTGAAAAGACGCCTCAA 364
|| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 121 AGTCAGAATGTCGATGTAGCTGGTGAGATTCTCTTTGCAATGACTGAAAAGACGCCTCAA 180
Query 365 TGTGACCAAGTTGAAATGAAG-ACAGCAACCTCAAAACCAACTCAGGTCTATGTTCCTAA 423
|||||||| |||||||||||| || | |||||||||||||| ||||||||||||||| ||
Sbjct 181 TGTGACCACGTTGAAATGAAGAAC-GAAACCTCAAAACCAAGTCAGGTCTATGTTCCCAA 239
Query 424 GGAAGTTCCACGACAAGAGGATAGCAAAGCGAAAGTATGGAGGCCGAAGAGAAATTCTAT 483
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 GGAAGTTCGACGACAAGAGGATAGCAAAGCCAAAGTATGGAGGCCGAAGAGAAATTCTAT 299
Query 484 ATCAAATGGTACTGTTTCAAGTGTTATTGGTAAGGAGTATGCTAGAACCAGGCCTATATC 543
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 300 ATCAGTTGGTACTGTTTCAAGTGTTATCGGTAAGGAGTATGCTAGAACCAGGCCTATATC 359
Query 544 AAATGCTCCCAAAGAAGCAACTAAACCATTGAAGATAAACTCAAGGGATATTCCAGAAAC 603
||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||
Sbjct 360 AAATGCTCCCAGAGAAGCAACTAAGCCAATGAAGATAGACTCAAGGGATATTCCAGAAAC 419
Query 604 TGAGATATGGAGTGAAGAAATGCGAAAAAGTAACGAGGGAAAGATAAGCAGGGCTCCAAC 663
|||| |||||||||||||||||| ||| ||||||||| ||||| || ||||||||||||
Sbjct 420 TGAGTTATGGAGTGAAGAAATGCCAAAGAGTAACGAGCCAAAGACAAACAGGGCTCCAAC 479
Query 664 TGATGTTGAGGAATTTATTGTTAAGATGCTTGGAGAAGGTTTTCAAGCTAGCCAAGAAGT 723
|||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||
Sbjct 480 TGATGTGGAGGAATTTATCGTTAAGATGCTTGGAGAAGGCTTTCAAGCTAGCCAAGATGT 539
Query 724 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CATTCACCAGGTTCTTGGCGTATGCGGATATGATGTGAAGAAGAGTACGGAGAAACTGCT 599
Query 784 TGACTTTTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 835
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TGACTTGTCTGATACCAAGAAATATGCTGATGTTGGAATTTCCAATGAAGTT 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65248589685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5