BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G15395.1

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg497332 jgi|Araly1|497332|fgenesh2_kg.230__4__AT3G15395.3          459    9e-129
  Ahg478978 jgi|Araly1|478978|fgenesh2_kg.3__1679__AT3G15395.4         427    2e-119


> Ahg497332 jgi|Araly1|497332|fgenesh2_kg.230__4__AT3G15395.3
Length=574

 Score =  459 bits (248),  Expect = 9e-129
 Identities = 307/334 (92%), Gaps = 9/334 (3%)
 Strand=Plus/Plus

Query  53   AAAGCTAGCTTTGAAAGAGTTATTGCAGAGaaaaaaaaTGGGATCGAGAGGGATTATCAA  112
            ||| |||||||||||||| ||||||||||||||||  |||||||||||||| ||||||||
Sbjct  153  AAA-CTAGCTTTGAAAGATTTATTGCAGAGAAAAAGTATGGGATCGAGAGGAATTATCAA  211

Query  113  CGATAAGTGGTCAATGAGGATTCTATGGGGTTGTGCTATCGGAAGTGCTATTGGTTTATA  172
            |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct  212  CGATAAGTGGTCAATGAGGATTTTATGGGGTTGTGCTATCGGAAGTGCAATTGGTTTATA  271

Query  173  CATGGTTGCTGTAGAGAGACAAACTCAGAACAGGGCTCGTGCTATGGCTGAGAGTTTGAG  232
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct  272  CATGGTTGCTGTAGAAAGACAAACTCAGAACAGGGCTCGTGCTATGGCTGAGAGTTTGAG  331

Query  233  AGCTGCTGAATCACAAGGTGATGGTGATAATGTCTAA-T--AT--CTACCAAGTAGTGCT  287
            ||||||||| ||||||||||||||||||| ||||||| |  ||  ||||| |||||||||
Sbjct  332  AGCTGCTGAGTCACAAGGTGATGGTGATAGTGTCTAAATCTATATCTACCTAGTAGTGCT  391

Query  288  CAGTTGAATACTCTCAGTTGAGtttttttttttG-GTGTTTGTTTTTGTTATAATGACTT  346
            |||  ||| | ||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct  392  CAGAAGAAGAATCTCAGTTGAGTTTTTTTTTTTTTGTGTTTGTTTTTGTTATAATGACTT  451

Query  347  CTTCTGCCAAGA--TGGTGTTGATGTAGTTTCTT  378
            ||||| ||||||  |  |||||||||||||||||
Sbjct  452  CTTCTTCCAAGAGATTTTGTTGATGTAGTTTCTT  485


> Ahg478978 jgi|Araly1|478978|fgenesh2_kg.3__1679__AT3G15395.4
Length=444

 Score =  427 bits (231),  Expect = 2e-119
 Identities = 290/317 (91%), Gaps = 9/317 (3%)
 Strand=Plus/Plus

Query  69   GAGTTATTGCAGAGaaaaaaaaTGGGATCGAGAGGGATTATCAACGATAAGTGGTCAATG  128
            |||| ||| | |||||| |  |||||||||||||| ||||||||||||||||||||||||
Sbjct  104  GAGTAATT-CTGAGAAACAGTATGGGATCGAGAGGAATTATCAACGATAAGTGGTCAATG  162

Query  129  AGGATTCTATGGGGTTGTGCTATCGGAAGTGCTATTGGTTTATACATGGTTGCTGTAGAG  188
            |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| 
Sbjct  163  AGGATTTTATGGGGTTGTGCTATCGGAAGTGCAATTGGTTTATACATGGTTGCTGTAGAA  222

Query  189  AGACAAACTCAGAACAGGGCTCGTGCTATGGCTGAGAGTTTGAGAGCTGCTGAATCACAA  248
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  223  AGACAAACTCAGAACAGGGCTCGTGCTATGGCTGAGAGTTTGAGAGCTGCTGAGTCACAA  282

Query  249  GGTGATGGTGATAATGTCTAA-T--AT--CTACCAAGTAGTGCTCAGTTGAATACTCTCA  303
            ||||||||||||| ||||||| |  ||  ||||| ||||||||||||  ||| | |||||
Sbjct  283  GGTGATGGTGATAGTGTCTAAATCTATATCTACCTAGTAGTGCTCAGAAGAAGAATCTCA  342

Query  304  GTTGAGtttttttttttGGTGTTTGTTTTTGTTATAATGACTTCTTCTGCCAAGA--TGG  361
            |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||  | |
Sbjct  343  GTTGAGTTTTTTTTTTTG-TGTTTGTTTTTGTTATAATGACTTCTTCTTCCAAGAGATTG  401

Query  362  TGTTGATGTAGTTTCTT  378
            |||||||||||||||||
Sbjct  402  TGTTGATGTAGTTTCTT  418



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13583389684


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5