BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G15400.1
Length=1554
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497329 jgi|Araly1|497329|fgenesh2_kg.230__1__AT3G15400.1 953 0.0
Ahg478982 jgi|Araly1|478982|fgenesh2_kg.3__1683__AT3G15400.1 907 0.0
> Ahg497329 jgi|Araly1|497329|fgenesh2_kg.230__1__AT3G15400.1
Length=1310
Score = 953 bits (516), Expect = 0.0
Identities = 688/768 (90%), Gaps = 23/768 (3%)
Strand=Plus/Plus
Query 194 CCAGATCATGAGGTCCAACCTGAGCACACGGTCAAGCCTGGCCATACACTCCAGTCCATG 253
|||||||||||||| || |||||||||| ||||||||||| ||||| ||| |||||||||
Sbjct 4 CCAGATCATGAGGTACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATG 63
Query 254 TCCGGTGTATCAGAACATCCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATG 313
| |||| || ||||||||| ||||||||||| |||||| ||||| ||||||||| |||
Sbjct 64 TTGGGTGCATTAGAACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATG 123
Query 314 TCCGGTGCATTAGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATG 373
| |||| || |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 124 TTGGGTGAATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATG 183
Query 374 TTGGGAGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGT-TGG- 431
||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 184 TTGGGAGAACATCTTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGT 243
Query 432 G----AGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG- 485
| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 244 GTATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGTTAGGT 303
Query 486 G----AGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGT 541
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 304 GAATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTGCAGTCCATGTCTGGT 363
Query 542 GAATCAAAACATCCTGAGCACAAAGTCAAGCCTGATCAGATAATGCAGACCATGGCGAGT 601
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 364 GAATCAAAACATCCTGCGCACAAAATCAAGCCTGATCAGATAATGCAGACCATGGCGAGT 423
Query 602 GAACTGGAAGAGGAAGATCCTGACCACACAAGTAAGCCTATGGGGTATGGTGTAGGTAGG 661
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 424 GAACTGGAAGAGGAAGATCCAGACCACACAACTAAGCCTATGGGATATGGTGTAGGTAGG 483
Query 662 GGCTATGGAAGTGGTGGGTCTGGTGTTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGC 721
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 484 GGCTACGGAAGTGGTGGGTCTGGTGTTGGCTATGGCGTTG-AATTGGCTCTAGTGGAGGG 542
Query 722 AGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGC 781
||||||||||| ||||| | ||||||||||||||||| |||||||||||||| ||||||
Sbjct 543 AGTGGCTTTGGGGAAGGAACTGGCTCTAGTGGAGGCATTGGCTTTGGAGAAGGTATTGGC 602
Query 782 TCTAGTGGAGGCAGCGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGT 841
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 603 TCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGA 662
Query 842 GAAGGAATTGGTTCTGGTGGTGGTA-CAGG-TAT--TG--GCA-TTGGAGAAGGAATAGG 894
||||||||||| ||| ||||||| | | || | | || | | ||||| | ||||||||
Sbjct 663 GAAGGAATTGGGTCTAGTGGTGGCAGC-GGCTTTGGTGAAGGAATTGGA-A-GGAATAGG 719
Query 895 ATCCGGGTCTGCCCAACCCAATTGCGGCCCTGTCACGGGAGCTCCAGG 942
||||||||||| ||||||||||||||| || |||||||||||||||||
Sbjct 720 ATCCGGGTCTGGCCAACCCAATTGCGGTCCAGTCACGGGAGCTCCAGG 767
Score = 562 bits (304), Expect = 3e-159
Identities = 502/588 (85%), Gaps = 52/588 (9%)
Strand=Plus/Plus
Query 979 TCCAGGGGAAGGGATTGGTATCGGTATAGG--A-----C-AG-GGTGGACCTAGTGTAGT 1029
|||||| ||||||||||||||||| ||||| | | || |||||||| |||||||
Sbjct 762 TCCAGGCGAAGGGATTGGTATCGGAATAGGACAGGGCTCTAGTGGTGGACCCGGTGTAGT 821
Query 1030 AGTCCCAGGCACAAGAATCCCTCCGATAGTGGTTCCAGGCGCACAGATTCCCGGTTTTGT 1089
||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 822 TGTCCCAGGCGCAACAATCCCTCCCATAGTAGTTCCAGGCGCACAGATTCCCGGTTTTAC 881
Query 1090 GATTCCAGGTATCACAGTTCCTGGCTACGGTACTGGATGCCAAACAGGTGGCTGCAATCC 1149
||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 882 GATTCCAGGTATCACAGTTCCTGGCTACGGTTCTGGGTGCCAAACAGGTGGTTGCAATCC 941
Query 1150 GAACCCACCACACTACTATATCCCACCAAGCTGTCCCCATTGTCCACCTTTCACATCAGG 1209
| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 942 GTACCCACCACACTACTATAACCCACCAAGCTGTCCACATTGTCCACCTTTCACATCAGG 1001
Query 1210 ACAAGACAAACACATGTCAGACAAAGGAGCCATGACCGAAGCTCTTGCACCCACTTCACC 1269
| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 1002 AGAAGACAAGCACATGTCAGACAAAGGAGCAATGACGGAAGCTCTTGCACCCACTACACC 1061
Query 1270 GGAGATACATGTTTAAGCTTTAAGAGTCCATGAAACACCAGTCTAATAAA--TCACTCAT 1327
|||||| |||||||||| | ||||||||||||| ||||||||||| ||||||||
Sbjct 1062 GGAGATGCATGTTTAAG---T----GTCCATGAAACACGAGTCTAATAAATCTCACTCAT 1114
Query 1328 AATGAAATCTATTTTGGTTT-ATAAAAGCTTCACAGAAAGTTGAATAATACAACTTTCTT 1386
|||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 1115 AATGAAATCTATTTTGGTTTGGTAAAAGCTTCACATAAAGTTGAATAAGACAACTTTCTT 1174
Query 1387 GCTCAAGTAAAAAGATATATAAGGGAAATGCATATAAGAATAAGTGAGAAGTACTCAGAG 1446
|| | ||| | | |||| | | | | |||||| || |||| | |
Sbjct 1175 GC-C------CAAG-----T-A--GAAA-G--T-T-A-AATAAGGGA-AAGT--T-ATTT 1209
Query 1447 ACAGAAAAAGATTGATTAAGAATTAGGCAGCTGGTAATTGCATTTCCATGGCTGTGTATC 1506
| |||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 1210 A-AGAATAAG--TGATTGAGAATTAGGCAGCTGGTAATTGCATTTCCATGGC--TGTATC 1264
Query 1507 TGTATGACTGACAAATGAGTTT-AAATAGACCGGTCCACAAATCAAGT 1553
|||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1265 TGTATGACTGACAAATGAGTTTTAAA-A-ACCGGTCCACAAATCAAGT 1310
Score = 379 bits (205), Expect = 3e-104
Identities = 299/342 (87%), Gaps = 16/342 (5%)
Strand=Plus/Plus
Query 268 ACATCCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGCATTAGA 327
|||||| ||||||| ||| ||||||| ||||| ||| |||||||||| |||||||||||
Sbjct 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
Query 328 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 381
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
Query 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGGAGAACATCC 441
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGTTGGGAGAACATCT 197
Query 442 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGG---A---GAACATCC 495
|||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||
Sbjct 198 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACATCC 257
Query 496 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCT-GGTGAATCAAAACATC 554
||||||||||| ||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 258 TGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGT-TAGGTGAATCAGAACATC 316
Query 555 CTGAGCACAAAGTCAAGCCTGATCAGATAA-TGCAGACCATG 595
|||||||||| ||||||||||| || | || ||||| |||||
Sbjct 317 CTGAGCACAAGGTCAAGCCTGACCATA-AACTGCAGTCCATG 357
Score = 311 bits (168), Expect = 1e-83
Identities = 232/261 (89%), Gaps = 12/261 (5%)
Strand=Plus/Plus
Query 328 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 381
|||||||||||||| || ||||||||||||||||| ||||| ||||| || | |||
Sbjct 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
Query 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 435
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
Query 436 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGGAGAACATCC 495
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGTTGGGAGAACATCT 197
Query 496 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGTGAATCAAAACATCC 555
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 198 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACATCC 257
Query 556 TGAGCACAAAGTCAAGCCTGA 576
||||||||| |||||||||||
Sbjct 258 TGAGCACAAGGTCAAGCCTGA 278
Score = 283 bits (153), Expect = 2e-75
Identities = 286/345 (83%), Gaps = 30/345 (9%)
Strand=Plus/Plus
Query 212 CCTGAGCACACGGTCAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGTATCAGAACAT 271
||||||||||||||||||||| ||||| ||||||||| |||| |||| ||||||||||
Sbjct 82 CCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGAACAT 141
Query 272 CCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGCATTAGAACAT 331
|| ||||||| ||| ||||||| ||||| |||||||||||||| || | |||||||
Sbjct 142 CCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGT-TGG-G----AGAACAT 195
Query 332 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGG---A---GAACAT 385
| |||||||||||||||||||||||||||||||||||| |||| ||| | ||||||
Sbjct 196 CTTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACAT 255
Query 386 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-GA----GAACAT 439
||||||||||||| |||||||||||||||||||||||| |||| || || ||||||
Sbjct 256 CCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGTTAGGTGAATCAGAACAT 315
Query 440 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGT-TGG-GAG--AA--CAT 493
||||||||||||| ||||||||||||||||| ||||| |||| ||| || || |||
Sbjct 316 CCTGAGCACAAGGTCAAGCCTGACCATAAACTGCAGTCCATGTCTGGTGAATCAAAACAT 375
Query 494 CCTGAGCACAAGGAA--AAGCCTGACCATA-AACTCCAGTCCATG 535
|||| |||||| || |||||||| || | || | ||| |||||
Sbjct 376 CCTGCGCACAA--AATCAAGCCTGATCAGATAA-TGCAGACCATG 417
Score = 239 bits (129), Expect = 5e-62
Identities = 153/165 (93%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 688 TGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTC 747
||||| ||| | |||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 545 TGGCTTTGGGGAAGGAACTGGCTCTAGTGGAGGCATTGGCTTTGGAGAAGGTATTGGCTC 604
Query 748 TAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGAGA 807
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 605 TAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGA 664
Query 808 AGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGTGAAGGAATTGG 852
||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 665 AGGAATTGGGTCTAGTGGTGGCAGCGGCTTTGGTGAAGGAATTGG 709
Score = 185 bits (100), Expect = 7e-46
Identities = 120/130 (92%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 687 TTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCT 746
|||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCT 639
Query 747 CTAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGAG 806
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 640 CTAGTGGAGGCAGTGGCTTTGGAGAAGGAATTGGGTCTAGTGGTGGCAGCGGCTTTGGTG 699
Query 807 AAGGAATTGG 816
||||||||||
Sbjct 700 AAGGAATTGG 709
Score = 182 bits (98), Expect = 9e-45
Identities = 192/234 (82%), Gaps = 20/234 (9%)
Strand=Plus/Plus
Query 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 435
|||||||||||||| || ||||||||||||||||| ||||| ||||| || | |||
Sbjct 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
Query 436 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 489
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
Query 490 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGTGAATCAAA 549
||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGT-TGG-GAG--AA- 192
Query 550 ACATCCTGAGCACAAAGTCAAGCCTGATCAGATAA-TGCAGACCATGGCGAGTG 602
|||| ||||||||| | |||||||| || | || | ||| ||||| || |||
Sbjct 193 -CATCTTGAGCACAAGGAAAAGCCTGACCATA-AACTCCAGTCCATGTCGGGTG 244
Score = 117 bits (63), Expect = 3e-25
Identities = 83/93 (89%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 688 TGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTC 747
||||| ||| | || ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 617 TGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGAATTGGGTC 676
Query 748 TAGTGGAGGCAACGGCTTTGGAGAAGGAATTGG 780
|||||| |||| ||||||||| |||||||||||
Sbjct 677 TAGTGGTGGCAGCGGCTTTGGTGAAGGAATTGG 709
> Ahg478982 jgi|Araly1|478982|fgenesh2_kg.3__1683__AT3G15400.1
Length=1343
Score = 907 bits (491), Expect = 0.0
Identities = 621/683 (91%), Gaps = 12/683 (2%)
Strand=Plus/Plus
Query 194 CCAGATCATGAGGTCCAACCTGAGCACACGGTCAAGCCTGGCCATACACTCCAGTCCATG 253
|||||||||||||| || |||||||||| ||||||||||| ||||| ||| |||||||||
Sbjct 4 CCAGATCATGAGGTACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATG 63
Query 254 TCCGGTGTATCAGAACATCCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATG 313
| |||| || ||||||||| ||||||||||| |||||| ||||| ||||||||| |||
Sbjct 64 TTGGGTGCATTAGAACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATG 123
Query 314 TCCGGTGCATTAGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATG 373
| |||| || |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 124 TTGGGTGAATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATG 183
Query 374 TTGGGAGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGT-TGG- 431
||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 184 TTGGGAGAACATCTTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGT 243
Query 432 G----AGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG- 485
| |||||||||||||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 244 GTATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGTTAGGT 303
Query 486 G----AGAACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGT 541
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 304 GAATCAGAACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTGCAGTCCATGTCTGGT 363
Query 542 GAATCAAAACATCCTGAGCACAAAGTCAAGCCTGATCAGATAATGCAGACCATGGCGAGT 601
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 364 GAATCAAAACATCCTGCGCACAAAATCAAGCCTGATCAGATAATGCAGACCATGGCGAGT 423
Query 602 GAACTGGAAGAGGAAGATCCTGACCACACAAGTAAGCCTATGGGGTATGGTGTAGGTAGG 661
|||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||
Sbjct 424 GAACTGGAAGAGGAAGATCCAGACCACACAACTAAGCCTATGGGATATGGTGTAGGTAGG 483
Query 662 GGCTATGGAAGTGGTGGGTCTGGTGTTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGC 721
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 484 GGCTACGGAAGTGGTGGGTCTGGTGTTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGG 543
Query 722 AGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGC 781
||||||||||| ||||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 544 AGTGGCTTTGGGGAAGGAATTGGCTCTAGTGGAGGCATTGGCTTTGGAGAAGGTATTGGC 603
Query 782 TCTAGTGGAGGCAGCGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGT 841
|||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 604 TCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGA 663
Query 842 GAAGGAATTGGTTCTGGTGGTGG 864
||||||||||| ||| |||||||
Sbjct 664 GAAGGAATTGGGTCTAGTGGTGG 686
Score = 556 bits (301), Expect = 1e-157
Identities = 501/588 (85%), Gaps = 52/588 (9%)
Strand=Plus/Plus
Query 979 TCCAGGGGAAGGGATTGGTATCGGTATAGG--A-----C-AG-GGTGGACCTAGTGTAGT 1029
|||||| ||||||||||||||||| ||||| | | || |||||||| |||||||
Sbjct 795 TCCAGGCGAAGGGATTGGTATCGGAATAGGACAGGGCTCTAGTGGTGGACCCGGTGTAGT 854
Query 1030 AGTCCCAGGCACAAGAATCCCTCCGATAGTGGTTCCAGGCGCACAGATTCCCGGTTTTGT 1089
||||||||| ||| ||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 855 TGTCCCAGGCGCAACAATCCCTCCCATAGTAGTTCCAGGCGCACAGATTCCCGGTTTTAC 914
Query 1090 GATTCCAGGTATCACAGTTCCTGGCTACGGTACTGGATGCCAAACAGGTGGCTGCAATCC 1149
||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 915 GATTCCAGGTATCACAGTTCCTGGCTACGGTTCTGGGTGCCAAACAGGTGGTTGCAATCC 974
Query 1150 GAACCCACCACACTACTATATCCCACCAAGCTGTCCCCATTGTCCACCTTTCACATCAGG 1209
| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 975 GTACCCACCACACTACTATAACCCACCAAGCTGTCCACATTGTCCACCTTTCACATCAGG 1034
Query 1210 ACAAGACAAACACATGTCAGACAAAGGAGCCATGACCGAAGCTCTTGCACCCACTTCACC 1269
| ||||||| |||||||||||||||||||| ||||| |||||||||||||||||| ||||
Sbjct 1035 AGAAGACAAGCACATGTCAGACAAAGGAGCAATGACGGAAGCTCTTGCACCCACTACACC 1094
Query 1270 GGAGATACATGTTTAAGCTTTAAGAGTCCATGAAACACCAGTCTAATAAA--TCACTCAT 1327
|||||| |||||||||| | ||||||||||||| ||||||||||| ||||||||
Sbjct 1095 GGAGATGCATGTTTAAG---T----GTCCATGAAACACGAGTCTAATAAATCTCACTCAT 1147
Query 1328 AATGAAATCTATTTTGGTTT-ATAAAAGCTTCACAGAAAGTTGAATAATACAACTTTCTT 1386
|||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||
Sbjct 1148 AATGAAATCTATTTTGGTTTGGTAAAAGCTTCACATAAAGTTGAATAAGACAACTTTCTT 1207
Query 1387 GCTCAAGTAAAAAGATATATAAGGGAAATGCATATAAGAATAAGTGAGAAGTACTCAGAG 1446
|| | ||| | | |||| | | | | |||||| || |||| | |
Sbjct 1208 GC-C------CAAG-----T-A--GAAA-G--T-T-A-AATAAGGGA-AAGT--T-ATTT 1242
Query 1447 ACAGAAAAAGATTGATTAAGAATTAGGCAGCTGGTAATTGCATTTCCATGGCTGTGTATC 1506
| |||| ||| ||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 1243 A-AGAATAAG--TGATTGAGGATTAGGCAGCTGGTAATTGCATTTCCATGGC--TGTATC 1297
Query 1507 TGTATGACTGACAAATGAGTTT-AAATAGACCGGTCCACAAATCAAGT 1553
|||||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct 1298 TGTATGACTGACAAATGAGTTTTAAA-A-ACCGGTCCACAAATCAAGT 1343
Score = 388 bits (210), Expect = 5e-107
Identities = 240/255 (94%), Gaps = 0/255 (0%)
Strand=Plus/Plus
Query 688 TGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTC 747
||||| ||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 546 TGGCTTTGGGGAAGGAATTGGCTCTAGTGGAGGCATTGGCTTTGGAGAAGGTATTGGCTC 605
Query 748 TAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGAGA 807
||||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 606 TAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGA 665
Query 808 AGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGTGAAGGAATTGGTTCTGGTGGTGGTAC 867
||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 666 AGGAATTGGGTCTAGTGGTGGCAGCGGCTTTGGTGAAGGAATTGGGTCTGGTGGTGGTAC 725
Query 868 AGGTATTGGCATTGGAGAAGGAATAGGATCCGGGTCTGCCCAACCCAATTGCGGCCCTGT 927
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 726 AGGTATTGGCATTGGAGAAGGAATAGGATCCGGGTCTGGCCAACCCAATTGCGGTCCAGT 785
Query 928 CACGGGAGCTCCAGG 942
|||||||||||||||
Sbjct 786 CACGGGAGCTCCAGG 800
Score = 379 bits (205), Expect = 3e-104
Identities = 299/342 (87%), Gaps = 16/342 (5%)
Strand=Plus/Plus
Query 268 ACATCCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGCATTAGA 327
|||||| ||||||| ||| ||||||| ||||| ||| |||||||||| |||||||||||
Sbjct 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
Query 328 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 381
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
Query 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGGAGAACATCC 441
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGTTGGGAGAACATCT 197
Query 442 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGG---A---GAACATCC 495
|||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||
Sbjct 198 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACATCC 257
Query 496 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCT-GGTGAATCAAAACATC 554
||||||||||| ||||||||||||||||||||||| ||| | ||||||||| ||||||
Sbjct 258 TGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGT-TAGGTGAATCAGAACATC 316
Query 555 CTGAGCACAAAGTCAAGCCTGATCAGATAA-TGCAGACCATG 595
|||||||||| ||||||||||| || | || ||||| |||||
Sbjct 317 CTGAGCACAAGGTCAAGCCTGACCATA-AACTGCAGTCCATG 357
Score = 311 bits (168), Expect = 1e-83
Identities = 232/261 (89%), Gaps = 12/261 (5%)
Strand=Plus/Plus
Query 328 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 381
|||||||||||||| || ||||||||||||||||| ||||| ||||| || | |||
Sbjct 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
Query 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 435
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
Query 436 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGGAGAACATCC 495
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGTTGGGAGAACATCT 197
Query 496 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGTGAATCAAAACATCC 555
|||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||
Sbjct 198 TGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACATCC 257
Query 556 TGAGCACAAAGTCAAGCCTGA 576
||||||||| |||||||||||
Sbjct 258 TGAGCACAAGGTCAAGCCTGA 278
Score = 283 bits (153), Expect = 2e-75
Identities = 286/345 (83%), Gaps = 30/345 (9%)
Strand=Plus/Plus
Query 212 CCTGAGCACACGGTCAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGTATCAGAACAT 271
||||||||||||||||||||| ||||| ||||||||| |||| |||| ||||||||||
Sbjct 82 CCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGAACAT 141
Query 272 CCAGAGCACACGGTTAAGCCTGGCCATACACTCCAGTCCATGTCCGGTGCATTAGAACAT 331
|| ||||||| ||| ||||||| ||||| |||||||||||||| || | |||||||
Sbjct 142 CCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGT-TGG-G----AGAACAT 195
Query 332 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTTGGG---A---GAACAT 385
| |||||||||||||||||||||||||||||||||||| |||| ||| | ||||||
Sbjct 196 CTTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCGGGTGTATCAGAACAT 255
Query 386 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-GA----GAACAT 439
||||||||||||| |||||||||||||||||||||||| |||| || || ||||||
Sbjct 256 CCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCTTTGTTAGGTGAATCAGAACAT 315
Query 440 CCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGT-TGG-GAG--AA--CAT 493
||||||||||||| ||||||||||||||||| ||||| |||| ||| || || |||
Sbjct 316 CCTGAGCACAAGGTCAAGCCTGACCATAAACTGCAGTCCATGTCTGGTGAATCAAAACAT 375
Query 494 CCTGAGCACAAGGAA--AAGCCTGACCATA-AACTCCAGTCCATG 535
|||| |||||| || |||||||| || | || | ||| |||||
Sbjct 376 CCTGCGCACAA--AATCAAGCCTGATCAGATAA-TGCAGACCATG 417
Score = 191 bits (103), Expect = 1e-47
Identities = 127/139 (91%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 687 TTGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCT 746
|||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TTGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCT 640
Query 747 CTAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGGAGGCAGCGGCTTTGGAG 806
|||||||||||| |||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 641 CTAGTGGAGGCAGTGGCTTTGGAGAAGGAATTGGGTCTAGTGGTGGCAGCGGCTTTGGTG 700
Query 807 AAGGAATTGGCTCTAGTGG 825
|||||||||| ||| ||||
Sbjct 701 AAGGAATTGGGTCTGGTGG 719
Score = 182 bits (98), Expect = 9e-45
Identities = 192/234 (82%), Gaps = 20/234 (9%)
Strand=Plus/Plus
Query 382 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 435
|||||||||||||| || ||||||||||||||||| ||||| ||||| || | |||
Sbjct 18 ACATCCTGAGCACATGGTCAAGCCTGACCATAAACTGCAGTCCATGTTGGGTGCATTAGA 77
Query 436 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCTATGTT-GG-G----AGA 489
|||||||||||||| || |||||| |||||||||||||||||||||| || | |||
Sbjct 78 ACATCCTGAGCACACGGTCAAGCCTAACCATAAACTCCAGTCTATGTTGGGTGAATCAGA 137
Query 490 ACATCCTGAGCACAAGGAAAAGCCTGACCATAAACTCCAGTCCATGTCTGGTGAATCAAA 549
||||||||||||||||| |||||||||||||||||||||||||||| ||| || ||
Sbjct 138 ACATCCTGAGCACAAGGTCAAGCCTGACCATAAACTCCAGTCCATGT-TGG-GAG--AA- 192
Query 550 ACATCCTGAGCACAAAGTCAAGCCTGATCAGATAA-TGCAGACCATGGCGAGTG 602
|||| ||||||||| | |||||||| || | || | ||| ||||| || |||
Sbjct 193 -CATCTTGAGCACAAGGAAAAGCCTGACCATA-AACTCCAGTCCATGTCGGGTG 244
Score = 122 bits (66), Expect = 5e-27
Identities = 90/102 (88%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 688 TGGCTATGGCGTTGGAATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGTATTGGCTC 747
||||| ||| | || ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 618 TGGCTTTGGAGAAGGTATTGGCTCTAGTGGAGGCAGTGGCTTTGGAGAAGGAATTGGGTC 677
Query 748 TAGTGGAGGCAACGGCTTTGGAGAAGGAATTGGCTCTAGTGG 789
|||||| |||| ||||||||| ||||||||||| ||| ||||
Sbjct 678 TAGTGGTGGCAGCGGCTTTGGTGAAGGAATTGGGTCTGGTGG 719
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58201894360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5